Wall clock time and date at job start Tue Mar 31 2020 05:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48497 * 109.47237 * 90.00486 * 3 2 1 5 5 H 1.48503 * 109.47087 * 210.00254 * 3 2 1 6 6 H 1.48499 * 109.47388 * 330.00256 * 3 2 1 7 7 C 1.38814 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99402 * 191.25463 * 7 2 1 9 9 N 1.36935 * 119.99968 * 11.25353 * 7 2 1 10 10 C 1.47148 * 120.98251 * 31.38275 * 9 7 2 11 11 C 1.53713 * 108.15945 * 129.43786 * 10 9 7 12 12 O 1.42961 * 109.15153 * 52.53119 * 11 10 9 13 13 C 1.42961 * 114.16908 * 297.29423 * 12 11 10 14 14 C 1.47155 * 120.97836 * 211.66909 * 9 7 2 15 15 H 1.08991 * 109.68264 * 110.78769 * 14 9 7 16 16 C 1.52997 * 109.68101 * 350.23000 * 14 9 7 17 17 N 1.46501 * 109.46971 * 60.21067 * 16 14 9 18 18 C 1.34783 * 119.99866 * 179.97438 * 17 16 14 19 19 O 1.21276 * 119.99929 * 359.97438 * 18 17 16 20 20 C 1.50702 * 119.99657 * 180.02562 * 18 17 16 21 21 C 1.54268 * 110.03266 * 297.16624 * 20 18 17 22 22 C 1.54893 * 104.19233 * 217.10873 * 21 20 18 23 23 C 1.54889 * 102.75016 * 37.94063 * 22 21 20 24 24 C 1.53876 * 110.02890 * 179.97438 * 20 18 17 25 25 H 0.97005 * 119.99447 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.68053 * 249.20730 * 10 9 7 27 27 H 1.08994 * 109.68531 * 9.76222 * 10 9 7 28 28 H 1.09008 * 109.65044 * 292.56523 * 11 10 9 29 29 H 1.08999 * 109.44245 * 172.37799 * 11 10 9 30 30 H 1.09003 * 109.50899 * 302.65296 * 13 12 11 31 31 H 1.08997 * 109.51167 * 182.50190 * 13 12 11 32 32 H 1.09003 * 109.46878 * 180.20572 * 16 14 9 33 33 H 1.08997 * 109.47745 * 300.21128 * 16 14 9 34 34 H 0.97000 * 120.00056 * 359.97438 * 17 16 14 35 35 H 1.08996 * 110.01669 * 58.60767 * 20 18 17 36 36 H 1.09000 * 110.48479 * 335.78115 * 21 20 18 37 37 H 1.08993 * 110.48802 * 98.42875 * 21 20 18 38 38 H 1.08994 * 110.75396 * 279.62399 * 22 21 20 39 39 H 1.09006 * 110.91220 * 156.32912 * 22 21 20 40 40 H 1.08999 * 110.48476 * 203.37509 * 23 22 21 41 41 H 1.09008 * 110.59642 * 80.79465 * 23 22 21 42 42 H 1.08997 * 110.03671 * 238.56858 * 24 20 18 43 43 H 1.09000 * 110.03364 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 3.5478 1.4402 -0.7001 6 1 1.4477 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0747 -1.2112 0.1820 9 7 1.3453 -2.3766 -0.2325 10 6 0.1648 -2.4180 -1.1099 11 6 0.3684 -3.5461 -2.1340 12 8 0.6874 -4.7558 -1.4420 13 6 1.9080 -4.7010 -0.6997 14 6 1.7865 -3.6332 0.3934 15 1 1.0547 -3.9500 1.1363 16 6 3.1459 -3.4253 1.0639 17 7 3.0293 -2.3895 2.0934 18 6 4.1084 -2.0370 2.8199 19 8 5.1758 -2.5776 2.6218 20 6 3.9883 -0.9719 3.8792 21 6 3.5974 0.3737 3.2338 22 6 4.3866 1.4289 4.0480 23 6 5.7380 0.7184 4.3091 24 6 5.3491 -0.7531 4.5633 25 1 -0.4849 0.8401 0.0004 26 1 -0.7276 -2.6147 -0.5157 27 1 0.0587 -1.4650 -1.6280 28 1 1.1846 -3.2863 -2.8082 29 1 -0.5481 -3.6854 -2.7074 30 1 2.7297 -4.4455 -1.3687 31 1 2.0991 -5.6712 -0.2412 32 1 3.4710 -4.3589 1.5231 33 1 3.8759 -3.1144 0.3167 34 1 2.1755 -1.9574 2.2521 35 1 3.2418 -1.2631 4.6182 36 1 3.8990 0.3963 2.1866 37 1 2.5249 0.5441 3.3267 38 1 3.8793 1.6509 4.9867 39 1 4.5345 2.3385 3.4659 40 1 6.2276 1.1406 5.1867 41 1 6.3871 0.7965 3.4369 42 1 5.2627 -0.9371 5.6342 43 1 6.0965 -1.4170 4.1288 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050795514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:54 Heat of formation + Delta-G solvation = -85.671063 kcal Electronic energy + Delta-G solvation = -24074.013755 eV Core-core repulsion = 20732.631569 eV Total energy + Delta-G solvation = -3341.382186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16236 -40.03331 -38.04573 -36.89182 -35.27202 -33.31189 -32.18146 -30.25216 -29.56500 -28.92263 -26.83450 -25.22698 -23.58386 -22.51961 -21.55183 -21.40225 -20.36327 -18.77757 -17.99286 -17.55946 -17.27163 -16.73704 -16.28934 -16.23116 -16.07715 -15.62880 -15.35735 -15.17274 -14.84883 -14.52642 -14.35731 -14.07094 -13.53448 -13.12593 -12.89087 -12.73889 -12.62781 -12.48951 -12.21902 -12.13973 -12.03665 -11.99289 -11.89133 -11.84263 -11.63653 -11.40215 -11.29301 -10.82787 -10.55656 -10.51809 -9.82506 -8.60358 -7.85894 -5.36829 1.42296 1.47778 1.51827 1.75144 2.38820 2.48811 3.02939 3.31051 3.44138 3.58354 3.69950 3.84480 4.03802 4.19410 4.27263 4.37310 4.46496 4.47586 4.53899 4.55382 4.60238 4.63575 4.64952 4.69547 4.75815 4.79383 4.99659 5.00503 5.05364 5.10795 5.21790 5.25935 5.29834 5.38638 5.45998 5.59783 5.66258 5.71594 6.29189 6.37977 6.74595 7.12078 7.37582 7.77472 8.34240 9.18484 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017154 B = 0.007139 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.846175 B = 3921.125578 C = 5228.703412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.024 4.024 3 Si 0.929 3.071 4 H -0.252 1.252 5 H -0.291 1.291 6 H -0.304 1.304 7 C -0.241 4.241 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.150 3.850 11 C 0.046 3.954 12 O -0.397 6.397 13 C 0.058 3.942 14 C 0.126 3.874 15 H 0.037 0.963 16 C 0.141 3.859 17 N -0.696 5.696 18 C 0.509 3.491 19 O -0.593 6.593 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.114 4.114 25 H 0.249 0.751 26 H 0.008 0.992 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.412 0.588 35 H 0.115 0.885 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.089 0.911 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 -1.948 6.604 8.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.221 4.221 3 Si 0.758 3.242 4 H -0.177 1.177 5 H -0.217 1.217 6 H -0.231 1.231 7 C -0.371 4.371 8 H 0.082 0.918 9 N -0.330 5.330 10 C 0.024 3.976 11 C -0.032 4.032 12 O -0.316 6.316 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.055 0.945 16 C 0.017 3.983 17 N -0.345 5.345 18 C 0.297 3.703 19 O -0.475 6.475 20 C -0.129 4.129 21 C -0.153 4.153 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.151 4.151 25 H 0.059 0.941 26 H 0.026 0.974 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.122 0.878 30 H 0.066 0.934 31 H 0.135 0.865 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.249 0.751 35 H 0.133 0.867 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.107 0.893 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.369 -2.369 6.454 8.723 hybrid contribution -0.204 1.507 -0.485 1.596 sum 5.165 -0.863 5.970 7.941 Atomic orbital electron populations 1.70101 1.06125 1.25550 1.55303 1.25528 0.95590 1.00011 1.00997 0.85951 0.77490 0.81492 0.79281 1.17673 1.21680 1.23148 1.19197 0.90982 0.84037 1.42843 0.91763 1.44292 1.32743 1.03686 1.52319 1.21314 0.88280 0.96855 0.91126 1.23295 1.00495 0.85269 0.94148 1.87801 1.41994 1.35725 1.66076 1.22984 0.86297 0.99681 0.93114 1.21546 0.93939 0.88397 0.94159 0.94543 1.21087 0.96376 0.90923 0.89928 1.46072 1.13000 1.39715 1.35726 1.21036 0.83180 0.83304 0.82778 1.90571 1.28916 1.57184 1.70856 1.21971 1.01265 0.93504 0.96136 1.22376 1.00743 0.93500 0.98663 1.22520 0.95869 0.97049 1.00322 1.22357 0.96897 0.94552 1.01871 1.22145 0.94678 0.97499 1.00823 0.94118 0.97390 0.91714 0.93905 0.87777 0.93426 0.86487 0.90402 0.93596 0.75133 0.86721 0.93928 0.91204 0.89215 0.91804 0.89120 0.93053 0.89256 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.74 11.18 21.65 0.24 -49.50 16 2 C -0.02 -1.24 5.05 84.86 0.43 -0.81 16 3 Si 0.93 41.73 28.16 68.60 1.93 43.66 16 4 H -0.25 -10.36 6.30 99.48 0.63 -9.74 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 7 C -0.24 -11.77 7.01 84.03 0.59 -11.18 16 8 H 0.06 3.25 5.83 -2.91 -0.02 3.23 16 9 N -0.60 -27.50 3.02 -672.95 -2.03 -29.53 16 10 C 0.15 6.79 5.40 86.50 0.47 7.26 16 11 C 0.05 1.70 7.00 72.22 0.51 2.20 16 12 O -0.40 -14.62 10.74 -148.98 -1.60 -16.22 16 13 C 0.06 1.92 6.29 72.08 0.45 2.38 16 14 C 0.13 4.79 3.21 44.96 0.14 4.93 16 15 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 16 C 0.14 5.16 4.45 86.38 0.38 5.54 16 17 N -0.70 -25.91 3.71 -463.06 -1.72 -27.63 16 18 C 0.51 18.65 6.99 87.66 0.61 19.26 16 19 O -0.59 -24.88 15.21 -3.02 -0.05 -24.93 16 20 C -0.11 -3.17 3.30 -10.81 -0.04 -3.20 16 21 C -0.11 -3.61 5.48 31.67 0.17 -3.44 16 22 C -0.12 -2.99 6.91 31.89 0.22 -2.77 16 23 C -0.12 -2.80 6.83 31.69 0.22 -2.59 16 24 C -0.11 -2.95 6.40 31.34 0.20 -2.74 16 25 H 0.25 13.25 8.31 -92.70 -0.77 12.48 16 26 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.06 3.27 6.36 -2.39 -0.02 3.26 16 28 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.05 1.86 7.59 -2.39 -0.02 1.84 16 34 H 0.41 16.14 7.28 -92.71 -0.67 15.46 16 35 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 36 H 0.04 1.59 6.39 -2.39 -0.02 1.58 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.07 2.05 6.39 -2.39 -0.02 2.04 16 Total: -1.00 -59.71 328.99 1.38 -58.33 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.24 Total: 30.98 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 4.36 Total: 14.84 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -3.51 Total: -106.66 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -1.65 Total: -41.15 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 1.93 Total: 43.66 kcal Total: -59.71 1.38 -58.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050795514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.340 kcal (2) G-P(sol) polarization free energy of solvation -59.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds