Wall clock time and date at job start Tue Mar 31 2020 05:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48507 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47173 * 300.00161 * 3 2 1 6 6 H 1.48493 * 109.47309 * 60.00266 * 3 2 1 7 7 C 1.38816 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99862 * 169.16812 * 7 2 1 9 9 N 1.36944 * 119.99997 * 349.16274 * 7 2 1 10 10 C 1.47149 * 120.97839 * 328.77437 * 9 7 2 11 11 C 1.53297 * 108.38060 * 230.55262 * 10 9 7 12 12 O 1.42964 * 109.22573 * 307.69949 * 11 10 9 13 13 C 1.42958 * 114.16379 * 62.58240 * 12 11 10 14 14 C 1.47149 * 120.98169 * 148.79302 * 9 7 2 15 15 H 1.09002 * 109.68283 * 249.16958 * 14 9 7 16 16 C 1.52998 * 109.67969 * 9.72210 * 14 9 7 17 17 N 1.46496 * 109.47440 * 299.41101 * 16 14 9 18 18 C 1.34776 * 120.00067 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00229 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99743 * 179.97438 * 18 17 16 21 21 C 1.54263 * 110.03441 * 297.90676 * 20 18 17 22 22 C 1.54963 * 104.15898 * 217.14064 * 21 20 18 23 23 C 1.54889 * 102.77993 * 37.88617 * 22 21 20 24 24 C 1.53873 * 110.03129 * 180.68642 * 20 18 17 25 25 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.68620 * 350.27777 * 10 9 7 27 27 H 1.09001 * 109.67865 * 110.83640 * 10 9 7 28 28 H 1.09005 * 109.51156 * 67.62624 * 11 10 9 29 29 H 1.09003 * 109.51023 * 187.77621 * 11 10 9 30 30 H 1.09000 * 109.51344 * 177.49635 * 13 12 11 31 31 H 1.08998 * 109.55607 * 57.36939 * 13 12 11 32 32 H 1.08998 * 109.47211 * 59.41571 * 16 14 9 33 33 H 1.09009 * 109.46781 * 179.41001 * 16 14 9 34 34 H 0.97000 * 120.00081 * 359.97438 * 17 16 14 35 35 H 1.09003 * 110.01436 * 59.30031 * 20 18 17 36 36 H 1.09008 * 110.48342 * 335.78091 * 21 20 18 37 37 H 1.08998 * 110.48781 * 98.42795 * 21 20 18 38 38 H 1.09000 * 110.71843 * 279.56826 * 22 21 20 39 39 H 1.09000 * 110.92380 * 156.29739 * 22 21 20 40 40 H 1.08996 * 110.48560 * 203.40916 * 23 22 21 41 41 H 1.08992 * 110.48561 * 80.76339 * 23 22 21 42 42 H 1.08996 * 110.03754 * 238.57490 * 24 20 18 43 43 H 1.09004 * 110.03297 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0758 -1.2104 -0.1763 9 7 1.3439 -2.3777 0.2219 10 6 0.1558 -2.4224 1.0890 11 6 0.3452 -3.5495 2.1107 12 8 0.6748 -4.7584 1.4223 13 6 1.9045 -4.7014 0.6955 14 6 1.7950 -3.6333 -0.3987 15 1 1.0730 -3.9511 -1.1510 16 6 3.1623 -3.4229 -1.0522 17 7 3.0549 -2.3934 -2.0889 18 6 4.1420 -2.0400 -2.8028 19 8 5.2094 -2.5739 -2.5867 20 6 4.0314 -0.9813 -3.8696 21 6 3.0563 -1.4422 -4.9725 22 6 3.6884 -0.9108 -6.2837 23 6 5.2045 -1.1134 -6.0399 24 6 5.3966 -0.7717 -4.5479 25 1 -0.4850 0.8400 0.0004 26 1 0.0445 -1.4707 1.6087 27 1 -0.7311 -2.6184 0.4865 28 1 1.1525 -3.2886 2.7951 29 1 -0.5782 -3.6906 2.6725 30 1 2.1030 -5.6711 0.2391 31 1 2.7179 -4.4452 1.3742 32 1 3.8808 -3.1045 -0.2969 33 1 3.4978 -4.3576 -1.5017 34 1 2.2012 -1.9666 -2.2620 35 1 3.6845 -0.0453 -3.4318 36 1 2.9915 -2.5302 -4.9941 37 1 2.0706 -1.0034 -4.8180 38 1 3.4572 0.1453 -6.4229 39 1 3.3537 -1.4941 -7.1415 40 1 5.7853 -0.4347 -6.6645 41 1 5.4871 -2.1480 -6.2339 42 1 5.7119 0.2660 -4.4400 43 1 6.1391 -1.4361 -4.1057 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050795518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:58 Heat of formation + Delta-G solvation = -70.452517 kcal Electronic energy + Delta-G solvation = -23779.479953 eV Core-core repulsion = 20438.757693 eV Total energy + Delta-G solvation = -3340.722260 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.72320 -38.49743 -36.82779 -35.26788 -33.57273 -31.62435 -30.50709 -29.05598 -28.49001 -27.19701 -25.31561 -23.47385 -22.04919 -21.12926 -20.53362 -19.73045 -18.96858 -17.20085 -16.48416 -15.89812 -15.82115 -15.37919 -14.85345 -14.64388 -14.46621 -14.23473 -13.83956 -13.64044 -13.28117 -13.11322 -12.84857 -12.67685 -11.91257 -11.60905 -11.42925 -11.14684 -11.08587 -11.01848 -10.94668 -10.91191 -10.73448 -10.62651 -10.42262 -10.35013 -10.25814 -10.07101 -9.67735 -9.29296 -8.94548 -8.69396 -8.24425 -6.75117 -5.93199 -3.42920 3.21770 3.24992 3.34725 3.37447 3.83712 4.31956 4.52084 4.65292 4.75326 4.96111 5.13344 5.24408 5.43645 5.56010 5.56702 5.60017 5.66654 5.72455 5.75658 5.80580 5.86340 5.96446 6.01018 6.03314 6.07794 6.14381 6.18726 6.25218 6.31740 6.33350 6.39142 6.51243 6.53826 6.75380 7.05418 7.16042 7.46670 7.68773 7.85136 8.24675 8.28849 8.87605 9.03430 9.63607 10.22917 11.13240 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.006428 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.526530 B = 4354.719746 C = 5457.556073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.009 3.991 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.254 4.254 8 H 0.074 0.926 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.035 3.965 12 O -0.393 6.393 13 C 0.056 3.944 14 C 0.125 3.875 15 H 0.041 0.959 16 C 0.135 3.865 17 N -0.693 5.693 18 C 0.514 3.486 19 O -0.565 6.565 20 C -0.114 4.114 21 C -0.113 4.113 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.118 4.118 25 H 0.255 0.745 26 H 0.092 0.908 27 H 0.029 0.971 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.415 0.585 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 -3.211 -6.852 8.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.191 4.191 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.383 4.383 8 H 0.092 0.908 9 N -0.317 5.317 10 C 0.018 3.982 11 C -0.043 4.043 12 O -0.311 6.311 13 C -0.023 4.023 14 C 0.018 3.982 15 H 0.058 0.942 16 C 0.011 3.989 17 N -0.344 5.344 18 C 0.300 3.700 19 O -0.445 6.445 20 C -0.136 4.136 21 C -0.151 4.151 22 C -0.161 4.161 23 C -0.160 4.160 24 C -0.156 4.156 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.101 0.899 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.115 0.885 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.281 -3.603 -6.674 8.709 hybrid contribution 0.016 1.519 0.107 1.523 sum 4.297 -2.083 -6.566 8.119 Atomic orbital electron populations 1.69987 1.05161 1.25548 1.53634 1.25146 0.95301 0.98187 1.00434 0.86345 0.79623 0.84121 0.77592 1.20083 1.21408 1.21443 1.19292 0.91399 0.83272 1.44360 0.90811 1.44093 1.32130 1.02933 1.52508 1.21415 0.88920 0.96804 0.91023 1.23356 0.99137 0.86551 0.95279 1.87799 1.40432 1.36091 1.66802 1.22864 0.86693 0.98709 0.94041 1.21429 0.93778 0.89281 0.93725 0.94157 1.21144 0.97407 0.90192 0.90164 1.46001 1.12649 1.40214 1.35538 1.20422 0.83893 0.83393 0.82263 1.90588 1.28276 1.56230 1.69439 1.21903 0.97748 0.98693 0.95210 1.22342 0.98242 1.01111 0.93442 1.22510 0.95441 1.01034 0.97123 1.22350 0.96127 1.01289 0.96241 1.22145 0.96686 1.02065 0.94726 0.93505 0.88982 0.95267 0.94126 0.90239 0.89943 0.93522 0.91639 0.92488 0.74673 0.88462 0.91305 0.90686 0.91419 0.91635 0.91903 0.91735 0.91852 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.92 11.14 55.49 0.62 -23.30 16 2 C 0.01 0.22 5.06 -17.43 -0.09 0.14 16 3 Si 0.89 20.50 29.57 -169.99 -5.03 15.47 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.25 -6.22 7.05 -15.05 -0.11 -6.33 16 8 H 0.07 1.86 5.81 -52.49 -0.31 1.55 16 9 N -0.59 -13.48 3.03 -164.30 -0.50 -13.98 16 10 C 0.14 3.25 5.38 -3.53 -0.02 3.23 16 11 C 0.03 0.67 6.98 37.31 0.26 0.93 16 12 O -0.39 -7.64 10.74 -35.23 -0.38 -8.01 16 13 C 0.06 0.99 6.29 37.31 0.23 1.23 16 14 C 0.12 2.44 3.21 -67.42 -0.22 2.22 16 15 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 16 C 0.14 2.52 4.45 -4.05 -0.02 2.50 16 17 N -0.69 -13.02 3.71 -60.29 -0.22 -13.25 16 18 C 0.51 9.56 7.00 -10.98 -0.08 9.48 16 19 O -0.56 -11.96 15.21 5.56 0.08 -11.87 16 20 C -0.11 -1.77 3.29 -90.65 -0.30 -2.06 16 21 C -0.11 -1.49 6.30 -25.03 -0.16 -1.65 16 22 C -0.12 -1.37 6.91 -24.70 -0.17 -1.54 16 23 C -0.12 -1.42 6.83 -25.07 -0.17 -1.59 16 24 C -0.12 -1.66 6.40 -25.61 -0.16 -1.83 16 25 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 26 H 0.09 2.29 6.33 -51.93 -0.33 1.96 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.33 7.57 -51.93 -0.39 0.94 16 33 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.42 8.13 7.30 -40.82 -0.30 7.84 16 35 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.07 0.92 7.85 -51.92 -0.41 0.51 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 1.43 6.39 -51.93 -0.33 1.10 16 LS Contribution 333.41 15.07 5.02 5.02 Total: -1.00 -28.17 333.41 -8.51 -36.67 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -7.12 Total: 8.52 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -0.99 Total: 4.71 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.10 Total: -50.52 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.29 Total: -19.88 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.17 -8.51 -36.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050795518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.778 kcal (2) G-P(sol) polarization free energy of solvation -28.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds