Wall clock time and date at job start Tue Mar 31 2020 05:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99970 * 2 1 4 4 H 1.48507 * 109.47096 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47173 * 300.00161 * 3 2 1 6 6 H 1.48493 * 109.47309 * 60.00266 * 3 2 1 7 7 C 1.38816 * 120.00021 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99862 * 169.16812 * 7 2 1 9 9 N 1.36944 * 119.99997 * 349.16274 * 7 2 1 10 10 C 1.47149 * 120.97839 * 328.77437 * 9 7 2 11 11 C 1.53297 * 108.38060 * 230.55262 * 10 9 7 12 12 O 1.42964 * 109.22573 * 307.69949 * 11 10 9 13 13 C 1.42958 * 114.16379 * 62.58240 * 12 11 10 14 14 C 1.47149 * 120.98169 * 148.79302 * 9 7 2 15 15 H 1.09002 * 109.68283 * 249.16958 * 14 9 7 16 16 C 1.52998 * 109.67969 * 9.72210 * 14 9 7 17 17 N 1.46496 * 109.47440 * 299.41101 * 16 14 9 18 18 C 1.34776 * 120.00067 * 180.02562 * 17 16 14 19 19 O 1.21281 * 120.00229 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99743 * 179.97438 * 18 17 16 21 21 C 1.54263 * 110.03441 * 297.90676 * 20 18 17 22 22 C 1.54963 * 104.15898 * 217.14064 * 21 20 18 23 23 C 1.54889 * 102.77993 * 37.88617 * 22 21 20 24 24 C 1.53873 * 110.03129 * 180.68642 * 20 18 17 25 25 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.68620 * 350.27777 * 10 9 7 27 27 H 1.09001 * 109.67865 * 110.83640 * 10 9 7 28 28 H 1.09005 * 109.51156 * 67.62624 * 11 10 9 29 29 H 1.09003 * 109.51023 * 187.77621 * 11 10 9 30 30 H 1.09000 * 109.51344 * 177.49635 * 13 12 11 31 31 H 1.08998 * 109.55607 * 57.36939 * 13 12 11 32 32 H 1.08998 * 109.47211 * 59.41571 * 16 14 9 33 33 H 1.09009 * 109.46781 * 179.41001 * 16 14 9 34 34 H 0.97000 * 120.00081 * 359.97438 * 17 16 14 35 35 H 1.09003 * 110.01436 * 59.30031 * 20 18 17 36 36 H 1.09008 * 110.48342 * 335.78091 * 21 20 18 37 37 H 1.08998 * 110.48781 * 98.42795 * 21 20 18 38 38 H 1.09000 * 110.71843 * 279.56826 * 22 21 20 39 39 H 1.09000 * 110.92380 * 156.29739 * 22 21 20 40 40 H 1.08996 * 110.48560 * 203.40916 * 23 22 21 41 41 H 1.08992 * 110.48561 * 80.76339 * 23 22 21 42 42 H 1.08996 * 110.03754 * 238.57490 * 24 20 18 43 43 H 1.09004 * 110.03297 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0758 -1.2104 -0.1763 9 7 1.3439 -2.3777 0.2219 10 6 0.1558 -2.4224 1.0890 11 6 0.3452 -3.5495 2.1107 12 8 0.6748 -4.7584 1.4223 13 6 1.9045 -4.7014 0.6955 14 6 1.7950 -3.6333 -0.3987 15 1 1.0730 -3.9511 -1.1510 16 6 3.1623 -3.4229 -1.0522 17 7 3.0549 -2.3934 -2.0889 18 6 4.1420 -2.0400 -2.8028 19 8 5.2094 -2.5739 -2.5867 20 6 4.0314 -0.9813 -3.8696 21 6 3.0563 -1.4422 -4.9725 22 6 3.6884 -0.9108 -6.2837 23 6 5.2045 -1.1134 -6.0399 24 6 5.3966 -0.7717 -4.5479 25 1 -0.4850 0.8400 0.0004 26 1 0.0445 -1.4707 1.6087 27 1 -0.7311 -2.6184 0.4865 28 1 1.1525 -3.2886 2.7951 29 1 -0.5782 -3.6906 2.6725 30 1 2.1030 -5.6711 0.2391 31 1 2.7179 -4.4452 1.3742 32 1 3.8808 -3.1045 -0.2969 33 1 3.4978 -4.3576 -1.5017 34 1 2.2012 -1.9666 -2.2620 35 1 3.6845 -0.0453 -3.4318 36 1 2.9915 -2.5302 -4.9941 37 1 2.0706 -1.0034 -4.8180 38 1 3.4572 0.1453 -6.4229 39 1 3.3537 -1.4941 -7.1415 40 1 5.7853 -0.4347 -6.6645 41 1 5.4871 -2.1480 -6.2339 42 1 5.7119 0.2660 -4.4400 43 1 6.1391 -1.4361 -4.1057 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050795518.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:57 Heat of formation + Delta-G solvation = -87.545173 kcal Electronic energy + Delta-G solvation = -23780.221147 eV Core-core repulsion = 20438.757693 eV Total energy + Delta-G solvation = -3341.463453 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.16482 -40.05142 -38.04118 -36.88604 -35.29941 -33.31807 -32.20570 -30.24383 -29.53377 -28.96007 -26.81964 -25.24859 -23.59240 -22.50399 -21.51269 -21.41399 -20.36087 -18.77066 -18.04826 -17.57332 -17.29692 -16.66190 -16.34374 -16.25009 -15.97756 -15.71025 -15.38815 -15.20430 -14.81856 -14.41032 -14.33800 -14.14838 -13.53926 -13.14042 -12.91425 -12.74918 -12.62391 -12.52695 -12.21830 -12.12730 -12.01662 -12.00277 -11.93944 -11.86375 -11.64931 -11.40531 -11.30206 -10.84731 -10.59117 -10.52931 -9.84050 -8.62383 -7.87483 -5.38602 1.38891 1.45857 1.52336 1.74401 2.36920 2.46690 3.02655 3.28414 3.43326 3.57931 3.70607 3.83867 4.03139 4.19181 4.26946 4.36366 4.46762 4.49258 4.54196 4.56913 4.60948 4.62636 4.65202 4.70722 4.75415 4.82364 4.98731 4.99926 5.09376 5.10812 5.23590 5.24608 5.29716 5.38546 5.47438 5.59446 5.65456 5.69924 6.28786 6.36923 6.73034 7.10516 7.36076 7.75841 8.32266 9.16927 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015793 B = 0.006428 C = 0.005129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.526530 B = 4354.719746 C = 5457.556073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.032 4.032 3 Si 0.943 3.057 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.295 1.295 7 C -0.241 4.241 8 H 0.067 0.933 9 N -0.604 5.604 10 C 0.149 3.851 11 C 0.046 3.954 12 O -0.397 6.397 13 C 0.058 3.942 14 C 0.126 3.874 15 H 0.037 0.963 16 C 0.141 3.859 17 N -0.695 5.695 18 C 0.511 3.489 19 O -0.593 6.593 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.117 4.117 24 C -0.119 4.119 25 H 0.250 0.750 26 H 0.066 0.934 27 H 0.007 0.993 28 H 0.043 0.957 29 H 0.105 0.895 30 H 0.117 0.883 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.411 0.589 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 -3.735 -7.860 9.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.228 4.228 3 Si 0.773 3.227 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.222 1.222 7 C -0.371 4.371 8 H 0.084 0.916 9 N -0.330 5.330 10 C 0.023 3.977 11 C -0.032 4.032 12 O -0.316 6.316 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.055 0.945 16 C 0.017 3.983 17 N -0.345 5.345 18 C 0.298 3.702 19 O -0.475 6.475 20 C -0.137 4.137 21 C -0.149 4.149 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.157 4.157 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.025 0.975 28 H 0.061 0.939 29 H 0.123 0.877 30 H 0.135 0.865 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.248 0.752 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.757 -4.145 -7.685 9.944 hybrid contribution -0.101 1.626 0.439 1.687 sum 4.657 -2.519 -7.247 8.975 Atomic orbital electron populations 1.70101 1.06077 1.25577 1.55331 1.25609 0.95773 1.00252 1.01200 0.85574 0.78378 0.81613 0.77158 1.20394 1.21078 1.22174 1.19297 0.91047 0.84035 1.42758 0.91555 1.44285 1.31967 1.03648 1.53136 1.21244 0.88158 0.96953 0.91295 1.23225 1.00515 0.85270 0.94193 1.87804 1.41171 1.35727 1.66873 1.22982 0.86131 0.99670 0.93316 1.21546 0.93822 0.88357 0.94268 0.94504 1.21093 0.96383 0.91004 0.89839 1.46046 1.12574 1.40268 1.35571 1.20982 0.83170 0.83563 0.82442 1.90570 1.29154 1.57453 1.70363 1.21995 0.99481 0.97213 0.95029 1.22348 0.97845 1.00908 0.93822 1.22509 0.94636 1.01878 0.96361 1.22337 0.96892 1.01737 0.94508 1.22155 0.95082 1.02130 0.96332 0.94027 0.91595 0.97453 0.93888 0.87718 0.86478 0.93368 0.93490 0.90449 0.75152 0.89006 0.91732 0.90574 0.90412 0.89795 0.89803 0.91911 0.90871 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -49.97 11.14 21.65 0.24 -49.73 16 2 C -0.03 -1.62 5.06 84.86 0.43 -1.19 16 3 Si 0.94 42.53 29.57 68.60 2.03 44.55 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.24 -11.89 7.05 84.03 0.59 -11.29 16 8 H 0.07 3.36 5.81 -2.91 -0.02 3.35 16 9 N -0.60 -27.55 3.03 -673.72 -2.04 -29.60 16 10 C 0.15 6.76 5.38 86.36 0.46 7.22 16 11 C 0.05 1.69 6.98 72.08 0.50 2.20 16 12 O -0.40 -14.58 10.74 -148.98 -1.60 -16.18 16 13 C 0.06 1.91 6.29 72.08 0.45 2.36 16 14 C 0.13 4.80 3.21 44.97 0.14 4.95 16 15 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 16 C 0.14 5.16 4.45 86.38 0.38 5.55 16 17 N -0.70 -26.01 3.71 -463.06 -1.72 -27.73 16 18 C 0.51 18.94 7.00 87.66 0.61 19.55 16 19 O -0.59 -25.16 15.21 -3.03 -0.05 -25.21 16 20 C -0.12 -3.51 3.29 -10.81 -0.04 -3.54 16 21 C -0.11 -2.77 6.30 31.69 0.20 -2.57 16 22 C -0.12 -2.27 6.91 31.91 0.22 -2.05 16 23 C -0.12 -2.44 6.83 31.67 0.22 -2.23 16 24 C -0.12 -3.22 6.40 31.32 0.20 -3.02 16 25 H 0.25 13.27 8.31 -92.71 -0.77 12.50 16 26 H 0.07 3.33 6.33 -2.39 -0.02 3.32 16 27 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.10 3.33 8.14 -2.39 -0.02 3.32 16 30 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.05 1.90 7.57 -2.39 -0.02 1.88 16 33 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 34 H 0.41 16.16 7.30 -92.71 -0.68 15.49 16 35 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 36 H 0.06 1.65 7.85 -2.38 -0.02 1.63 16 37 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 43 H 0.07 2.11 6.39 -2.39 -0.02 2.10 16 Total: -1.00 -60.10 333.41 1.57 -58.53 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: 0.32 Total: 29.43 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 4.39 Total: 15.93 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -3.52 Total: -107.06 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -1.65 Total: -41.39 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Total: -60.10 1.57 -58.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050795518.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.016 kcal (2) G-P(sol) polarization free energy of solvation -60.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds