Wall clock time and date at job start Tue Mar 31 2020 06:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99491 * 2 1 4 4 H 1.48501 * 109.47172 * 274.98688 * 3 2 1 5 5 H 1.48493 * 109.47547 * 34.99193 * 3 2 1 6 6 H 1.48501 * 109.46923 * 154.99317 * 3 2 1 7 7 C 1.38811 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99933 * 212.02232 * 7 2 1 9 9 N 1.36933 * 119.99836 * 32.01737 * 7 2 1 10 10 C 1.44664 * 118.81678 * 2.58468 * 9 7 2 11 11 C 1.54861 * 109.56181 * 270.94733 * 10 9 7 12 12 C 1.47090 * 110.17851 * 288.46866 * 11 10 9 13 13 C 1.52574 * 114.32871 * 62.89083 * 12 11 10 14 14 H 1.09001 * 109.48426 * 34.96300 * 13 12 11 15 15 N 1.46500 * 109.49221 * 155.01296 * 13 12 11 16 16 C 1.34772 * 119.99939 * 204.99882 * 15 13 12 17 17 O 1.21286 * 119.99833 * 0.02562 * 16 15 13 18 18 C 1.50695 * 120.00093 * 179.97438 * 16 15 13 19 19 H 1.08999 * 110.33311 * 57.25174 * 18 16 15 20 20 C 1.54483 * 110.37450 * 295.00136 * 18 16 15 21 21 C 1.54504 * 104.06226 * 217.18733 * 20 18 16 22 22 C 1.54477 * 104.06726 * 0.02562 * 21 20 18 23 23 O 1.44421 * 110.37607 * 179.61796 * 18 16 15 24 24 C 1.50884 * 109.35091 * 274.98165 * 13 12 11 25 25 C 1.47606 * 118.64415 * 182.57487 * 9 7 2 26 26 H 0.96997 * 120.00670 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.61353 * 150.82486 * 10 9 7 28 28 H 1.08999 * 109.32251 * 30.88776 * 10 9 7 29 29 H 1.09001 * 109.32830 * 168.29671 * 11 10 9 30 30 H 1.09001 * 109.32827 * 48.64617 * 11 10 9 31 31 H 1.09002 * 108.50978 * 184.13728 * 12 11 10 32 32 H 1.08999 * 108.51646 * 301.63005 * 12 11 10 33 33 H 0.96995 * 119.99729 * 25.00278 * 15 13 12 34 34 H 1.08999 * 110.50855 * 335.83429 * 20 18 16 35 35 H 1.09003 * 110.50849 * 98.54155 * 20 18 16 36 36 H 1.09001 * 110.51312 * 118.64377 * 21 20 18 37 37 H 1.09001 * 110.51691 * 241.21552 * 21 20 18 38 38 H 1.08997 * 110.38054 * 142.80782 * 22 21 20 39 39 H 1.09004 * 110.37296 * 265.03764 * 22 21 20 40 40 H 1.08998 * 109.35883 * 212.08189 * 24 13 12 41 41 H 1.08998 * 109.36372 * 331.82221 * 24 13 12 42 42 H 1.09003 * 108.94582 * 17.18642 * 25 9 7 43 43 H 1.09006 * 108.87850 * 258.50985 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4122 0.5919 7 6 2.0103 -1.2021 0.0005 8 1 2.9671 -1.2730 0.4965 9 7 1.4819 -2.2981 -0.6277 10 6 0.2259 -2.1599 -1.3320 11 6 -0.9471 -2.4376 -0.3598 12 6 -1.0081 -3.8708 -0.0345 13 6 0.2216 -4.4026 0.6954 14 1 0.6085 -3.6335 1.3640 15 7 -0.1466 -5.5874 1.4744 16 6 0.5771 -5.9335 2.5573 17 8 1.5329 -5.2638 2.8873 18 6 0.1980 -7.1520 3.3589 19 1 0.1889 -8.0366 2.7221 20 6 -1.1833 -6.9518 4.0210 21 6 -1.0414 -7.6350 5.3995 22 6 0.4090 -8.1666 5.4076 23 8 1.1129 -7.3331 4.4616 24 6 1.2808 -4.7724 -0.3135 25 6 2.2176 -3.5759 -0.5596 26 1 -0.4851 0.8400 -0.0004 27 1 0.1892 -2.8708 -2.1575 28 1 0.1411 -1.1459 -1.7228 29 1 -1.8834 -2.1337 -0.8279 30 1 -0.7995 -1.8656 0.5563 31 1 -1.8841 -4.0469 0.5898 32 1 -1.1297 -4.4312 -0.9614 33 1 -0.9112 -6.1228 1.2106 34 1 -1.3989 -5.8901 4.1413 35 1 -1.9626 -7.4366 3.4329 36 1 -1.1869 -6.9111 6.2014 37 1 -1.7522 -8.4560 5.4940 38 1 0.8449 -8.0650 6.4014 39 1 0.4330 -9.2085 5.0882 40 1 1.8612 -5.6143 0.0641 41 1 0.8034 -5.0544 -1.2519 42 1 2.9446 -3.5230 0.2508 43 1 2.7471 -3.7286 -1.5002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052184460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:19 Heat of formation + Delta-G solvation = -49.515658 kcal Electronic energy + Delta-G solvation = -23512.476250 eV Core-core repulsion = 20172.661880 eV Total energy + Delta-G solvation = -3339.814370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.26964 -38.76420 -37.29813 -34.68877 -32.63604 -31.97121 -31.79908 -30.26603 -29.09068 -26.06341 -24.42734 -23.52830 -22.80198 -21.71234 -20.27315 -19.86608 -19.12180 -17.38995 -16.66950 -16.51939 -15.95240 -15.22885 -15.18457 -14.96506 -14.26837 -13.96739 -13.83966 -13.62611 -13.30441 -13.10630 -12.59302 -12.09309 -12.03522 -11.93372 -11.90812 -11.57090 -11.54711 -11.17750 -10.99377 -10.76435 -10.62415 -10.23498 -10.11564 -9.96433 -9.86601 -9.76130 -9.63661 -9.29038 -9.22278 -8.69088 -8.14173 -6.81848 -5.70586 -2.93109 2.85035 3.08791 3.48035 3.56755 3.58525 3.97289 4.32355 4.56109 4.61020 4.65869 4.87354 4.92198 5.15323 5.32082 5.33540 5.39820 5.43329 5.50699 5.53974 5.69546 5.70039 5.78525 5.95297 6.08390 6.14240 6.26505 6.47611 6.54617 6.63395 6.74731 6.84376 6.88093 6.95402 7.12393 7.17141 7.24960 7.72663 7.81337 7.86807 8.19749 8.43071 8.53180 9.36030 9.99133 10.39651 11.31489 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024726 B = 0.004298 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.126143 B = 6513.189865 C = 6750.151291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.002 3.998 3 Si 0.883 3.117 4 H -0.291 1.291 5 H -0.296 1.296 6 H -0.281 1.281 7 C -0.253 4.253 8 H 0.075 0.925 9 N -0.598 5.598 10 C 0.182 3.818 11 C -0.125 4.125 12 C -0.109 4.109 13 C 0.155 3.845 14 H 0.104 0.896 15 N -0.724 5.724 16 C 0.512 3.488 17 O -0.512 6.512 18 C 0.057 3.943 19 H 0.091 0.909 20 C -0.146 4.146 21 C -0.154 4.154 22 C 0.041 3.959 23 O -0.344 6.344 24 C -0.139 4.139 25 C 0.154 3.846 26 H 0.250 0.750 27 H 0.005 0.995 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.105 0.895 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.391 0.609 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 -17.261 4.818 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.196 4.196 3 Si 0.713 3.287 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.207 1.207 7 C -0.381 4.381 8 H 0.093 0.907 9 N -0.321 5.321 10 C 0.056 3.944 11 C -0.165 4.165 12 C -0.147 4.147 13 C 0.052 3.948 14 H 0.122 0.878 15 N -0.376 5.376 16 C 0.295 3.705 17 O -0.385 6.385 18 C -0.005 4.005 19 H 0.109 0.891 20 C -0.184 4.184 21 C -0.191 4.191 22 C -0.036 4.036 23 O -0.261 6.261 24 C -0.180 4.180 25 C 0.027 3.973 26 H 0.060 0.940 27 H 0.023 0.977 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.123 0.877 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.224 0.776 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -5.636 -16.556 5.086 18.214 hybrid contribution -0.325 0.374 -0.089 0.503 sum -5.961 -16.182 4.997 17.954 Atomic orbital electron populations 1.70331 1.04985 1.24845 1.53349 1.24597 0.95083 0.97748 1.02127 0.86522 0.79927 0.84830 0.77427 1.21827 1.22280 1.20667 1.19376 1.01513 0.87513 1.29739 0.90726 1.44133 1.22640 1.05235 1.60054 1.20714 0.83744 0.99292 0.90677 1.21378 0.98493 0.91803 1.04806 1.20795 0.95396 1.00321 0.98187 1.20547 0.95229 0.85865 0.93168 0.87836 1.46257 1.32368 1.30390 1.28604 1.20085 0.83581 0.85856 0.80938 1.90777 1.27095 1.52476 1.68177 1.22901 0.89747 0.97127 0.90676 0.89124 1.22925 0.96072 1.03031 0.96339 1.22939 0.97525 1.00935 0.97732 1.23474 0.91463 0.94367 0.94314 1.89301 1.36979 1.70265 1.29577 1.22250 0.98220 0.99382 0.98104 1.21087 0.93163 0.84786 0.98240 0.94002 0.97697 0.90567 0.94388 0.87715 0.93969 0.93990 0.77596 0.89855 0.89660 0.90320 0.90243 0.88714 0.92119 0.92540 0.92853 0.92962 0.96435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 8.43 55.49 0.47 -24.18 16 2 C 0.00 0.04 4.73 -17.43 -0.08 -0.04 16 3 Si 0.88 21.94 29.66 -169.99 -5.04 16.89 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -7.01 9.56 -15.06 -0.14 -7.15 16 8 H 0.07 2.10 7.84 -52.49 -0.41 1.69 16 9 N -0.60 -14.89 2.30 -172.03 -0.39 -15.29 16 10 C 0.18 4.29 4.96 -4.04 -0.02 4.27 16 11 C -0.12 -2.72 4.83 -28.59 -0.14 -2.85 16 12 C -0.11 -1.94 4.68 -29.79 -0.14 -2.08 16 13 C 0.15 2.89 2.06 -69.21 -0.14 2.75 16 14 H 0.10 2.49 6.92 -51.93 -0.36 2.13 16 15 N -0.72 -10.76 4.91 -55.06 -0.27 -11.03 16 16 C 0.51 8.52 6.90 -10.99 -0.08 8.45 16 17 O -0.51 -11.40 16.21 -13.66 -0.22 -11.62 16 18 C 0.06 0.70 3.71 -27.11 -0.10 0.60 16 19 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 20 C -0.15 -1.37 6.61 -25.16 -0.17 -1.54 16 21 C -0.15 -1.23 7.09 -25.17 -0.18 -1.41 16 22 C 0.04 0.38 7.63 37.93 0.29 0.67 16 23 O -0.34 -5.01 10.91 -54.45 -0.59 -5.60 16 24 C -0.14 -2.57 5.38 -27.30 -0.15 -2.72 16 25 C 0.15 3.34 6.24 -2.95 -0.02 3.32 16 26 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.00 0.10 8.06 -51.93 -0.42 -0.31 16 28 H 0.08 2.01 6.01 -51.93 -0.31 1.70 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.10 2.72 6.33 -51.93 -0.33 2.39 16 31 H 0.04 0.68 8.04 -51.93 -0.42 0.26 16 32 H 0.04 0.68 7.35 -51.93 -0.38 0.30 16 33 H 0.39 4.31 8.60 -40.82 -0.35 3.96 16 34 H 0.08 0.92 7.86 -51.93 -0.41 0.52 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 41 H 0.05 0.91 7.31 -51.93 -0.38 0.53 16 42 H 0.05 1.20 7.79 -51.93 -0.40 0.79 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -32.28 331.53 -9.22 -41.50 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.10 Total: 2.04 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -1.06 Total: 2.27 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.20 Total: -50.49 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.82 Total: -17.22 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.04 Total: 16.89 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.28 -9.22 -41.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052184460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.012 kcal (2) G-P(sol) polarization free energy of solvation -32.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds