Wall clock time and date at job start Tue Mar 31 2020 06:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99491 * 2 1 4 4 H 1.48501 * 109.47172 * 274.98688 * 3 2 1 5 5 H 1.48493 * 109.47547 * 34.99193 * 3 2 1 6 6 H 1.48501 * 109.46923 * 154.99317 * 3 2 1 7 7 C 1.38811 * 120.00211 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99933 * 212.02232 * 7 2 1 9 9 N 1.36933 * 119.99836 * 32.01737 * 7 2 1 10 10 C 1.44664 * 118.81678 * 2.58468 * 9 7 2 11 11 C 1.54861 * 109.56181 * 270.94733 * 10 9 7 12 12 C 1.47090 * 110.17851 * 288.46866 * 11 10 9 13 13 C 1.52574 * 114.32871 * 62.89083 * 12 11 10 14 14 H 1.09001 * 109.48426 * 34.96300 * 13 12 11 15 15 N 1.46500 * 109.49221 * 155.01296 * 13 12 11 16 16 C 1.34772 * 119.99939 * 204.99882 * 15 13 12 17 17 O 1.21286 * 119.99833 * 0.02562 * 16 15 13 18 18 C 1.50695 * 120.00093 * 179.97438 * 16 15 13 19 19 H 1.08999 * 110.33311 * 57.25174 * 18 16 15 20 20 C 1.54483 * 110.37450 * 295.00136 * 18 16 15 21 21 C 1.54504 * 104.06226 * 217.18733 * 20 18 16 22 22 C 1.54477 * 104.06726 * 0.02562 * 21 20 18 23 23 O 1.44421 * 110.37607 * 179.61796 * 18 16 15 24 24 C 1.50884 * 109.35091 * 274.98165 * 13 12 11 25 25 C 1.47606 * 118.64415 * 182.57487 * 9 7 2 26 26 H 0.96997 * 120.00670 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.61353 * 150.82486 * 10 9 7 28 28 H 1.08999 * 109.32251 * 30.88776 * 10 9 7 29 29 H 1.09001 * 109.32830 * 168.29671 * 11 10 9 30 30 H 1.09001 * 109.32827 * 48.64617 * 11 10 9 31 31 H 1.09002 * 108.50978 * 184.13728 * 12 11 10 32 32 H 1.08999 * 108.51646 * 301.63005 * 12 11 10 33 33 H 0.96995 * 119.99729 * 25.00278 * 15 13 12 34 34 H 1.08999 * 110.50855 * 335.83429 * 20 18 16 35 35 H 1.09003 * 110.50849 * 98.54155 * 20 18 16 36 36 H 1.09001 * 110.51312 * 118.64377 * 21 20 18 37 37 H 1.09001 * 110.51691 * 241.21552 * 21 20 18 38 38 H 1.08997 * 110.38054 * 142.80782 * 22 21 20 39 39 H 1.09004 * 110.37296 * 265.03764 * 22 21 20 40 40 H 1.08998 * 109.35883 * 212.08189 * 24 13 12 41 41 H 1.08998 * 109.36372 * 331.82221 * 24 13 12 42 42 H 1.09003 * 108.94582 * 17.18642 * 25 9 7 43 43 H 1.09006 * 108.87850 * 258.50985 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3921 2.1074 -1.3948 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4122 0.5919 7 6 2.0103 -1.2021 0.0005 8 1 2.9671 -1.2730 0.4965 9 7 1.4819 -2.2981 -0.6277 10 6 0.2259 -2.1599 -1.3320 11 6 -0.9471 -2.4376 -0.3598 12 6 -1.0081 -3.8708 -0.0345 13 6 0.2216 -4.4026 0.6954 14 1 0.6085 -3.6335 1.3640 15 7 -0.1466 -5.5874 1.4744 16 6 0.5771 -5.9335 2.5573 17 8 1.5329 -5.2638 2.8873 18 6 0.1980 -7.1520 3.3589 19 1 0.1889 -8.0366 2.7221 20 6 -1.1833 -6.9518 4.0210 21 6 -1.0414 -7.6350 5.3995 22 6 0.4090 -8.1666 5.4076 23 8 1.1129 -7.3331 4.4616 24 6 1.2808 -4.7724 -0.3135 25 6 2.2176 -3.5759 -0.5596 26 1 -0.4851 0.8400 -0.0004 27 1 0.1892 -2.8708 -2.1575 28 1 0.1411 -1.1459 -1.7228 29 1 -1.8834 -2.1337 -0.8279 30 1 -0.7995 -1.8656 0.5563 31 1 -1.8841 -4.0469 0.5898 32 1 -1.1297 -4.4312 -0.9614 33 1 -0.9112 -6.1228 1.2106 34 1 -1.3989 -5.8901 4.1413 35 1 -1.9626 -7.4366 3.4329 36 1 -1.1869 -6.9111 6.2014 37 1 -1.7522 -8.4560 5.4940 38 1 0.8449 -8.0650 6.4014 39 1 0.4330 -9.2085 5.0882 40 1 1.8612 -5.6143 0.0641 41 1 0.8034 -5.0544 -1.2519 42 1 2.9446 -3.5230 0.2508 43 1 2.7471 -3.7286 -1.5002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052184460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:18 Heat of formation + Delta-G solvation = -71.103412 kcal Electronic energy + Delta-G solvation = -23513.412365 eV Core-core repulsion = 20172.661880 eV Total energy + Delta-G solvation = -3340.750485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.43798 -40.00063 -38.83989 -36.36451 -34.09826 -33.56680 -33.02501 -31.79423 -30.26845 -27.87051 -25.85874 -25.12506 -24.26077 -22.45527 -21.72695 -21.24935 -20.88340 -18.58611 -18.44291 -17.56860 -17.21609 -17.07466 -16.30232 -16.11040 -15.89183 -15.54310 -15.28338 -14.82804 -14.66480 -14.54416 -14.20579 -13.79907 -13.74338 -13.34785 -13.08295 -12.75785 -12.69701 -12.68583 -12.38202 -12.24400 -12.13147 -11.84563 -11.70824 -11.66573 -11.49411 -11.38390 -11.04597 -11.00079 -10.58646 -10.26163 -10.05177 -8.80877 -7.81485 -5.05055 1.45539 1.49480 1.56677 1.58853 1.94449 2.55324 3.09718 3.21150 3.49701 3.68441 3.73142 3.85221 3.92918 4.10364 4.16361 4.23749 4.35646 4.39605 4.49633 4.56888 4.68371 4.69965 4.81429 4.87715 4.92888 4.95960 5.02420 5.10695 5.14130 5.21330 5.24163 5.33713 5.42852 5.49563 5.61329 5.68096 5.78643 5.86503 6.31135 6.35932 6.62213 7.26624 7.31597 8.00228 8.32514 9.16929 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.024726 B = 0.004298 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.126143 B = 6513.189865 C = 6750.151291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.037 4.037 3 Si 0.939 3.061 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.272 4.272 8 H 0.057 0.943 9 N -0.609 5.609 10 C 0.183 3.817 11 C -0.112 4.112 12 C -0.103 4.103 13 C 0.164 3.836 14 H 0.042 0.958 15 N -0.704 5.704 16 C 0.505 3.495 17 O -0.581 6.581 18 C 0.061 3.939 19 H 0.129 0.871 20 C -0.142 4.142 21 C -0.148 4.148 22 C 0.033 3.967 23 O -0.392 6.392 24 C -0.127 4.127 25 C 0.150 3.850 26 H 0.246 0.754 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.047 0.953 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.416 0.584 34 H 0.058 0.942 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.024 0.976 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 -20.097 4.118 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.233 4.233 3 Si 0.769 3.231 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.208 1.208 7 C -0.402 4.402 8 H 0.075 0.925 9 N -0.332 5.332 10 C 0.058 3.942 11 C -0.153 4.153 12 C -0.141 4.141 13 C 0.060 3.940 14 H 0.060 0.940 15 N -0.357 5.357 16 C 0.291 3.709 17 O -0.460 6.460 18 C 0.000 4.000 19 H 0.146 0.854 20 C -0.180 4.180 21 C -0.186 4.186 22 C -0.043 4.043 23 O -0.311 6.311 24 C -0.167 4.167 25 C 0.025 3.975 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.254 0.746 34 H 0.077 0.923 35 H 0.143 0.857 36 H 0.089 0.911 37 H 0.132 0.868 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.042 0.958 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -7.698 -19.439 4.370 21.360 hybrid contribution 0.333 1.254 0.172 1.309 sum -7.365 -18.185 4.542 20.138 Atomic orbital electron populations 1.70487 1.05501 1.24882 1.53627 1.25143 0.95893 0.99814 1.02499 0.85665 0.78637 0.81630 0.77210 1.21440 1.22405 1.20817 1.19451 1.01141 0.89219 1.30349 0.92480 1.44246 1.23365 1.05698 1.59918 1.20655 0.83862 0.98124 0.91591 1.21105 0.98031 0.93999 1.02146 1.20640 0.95623 0.97850 1.00014 1.20128 0.95733 0.85903 0.92249 0.94002 1.45947 1.32788 1.29231 1.27747 1.21060 0.82389 0.86538 0.80899 1.90750 1.30238 1.55032 1.69931 1.23056 0.90698 0.95708 0.90516 0.85379 1.22986 0.95191 1.02244 0.97563 1.22957 0.97338 1.01702 0.96553 1.23759 0.91901 0.95027 0.93639 1.89264 1.39055 1.71627 1.31112 1.22124 0.97597 0.97651 0.99333 1.21175 0.93448 0.85092 0.97818 0.94381 0.95029 0.93960 0.93486 0.92379 0.91693 0.90631 0.74633 0.92287 0.85681 0.91111 0.86833 0.88484 0.89544 0.92001 0.89914 0.95759 0.94962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.31 8.43 21.65 0.18 -51.13 16 2 C -0.04 -2.12 4.73 84.86 0.40 -1.72 16 3 Si 0.94 46.46 29.66 68.60 2.03 48.50 16 4 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 5 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 6 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 7 C -0.27 -15.73 9.56 84.03 0.80 -14.93 16 8 H 0.06 3.41 7.84 -2.91 -0.02 3.39 16 9 N -0.61 -31.06 2.30 -698.17 -1.60 -32.67 16 10 C 0.18 8.63 4.96 87.36 0.43 9.06 16 11 C -0.11 -4.86 4.83 29.39 0.14 -4.71 16 12 C -0.10 -3.44 4.68 28.62 0.13 -3.31 16 13 C 0.16 6.03 2.06 44.16 0.09 6.12 16 14 H 0.04 2.10 6.92 -2.39 -0.02 2.09 16 15 N -0.70 -19.64 4.91 -446.50 -2.19 -21.84 16 16 C 0.50 16.65 6.90 87.66 0.60 17.26 16 17 O -0.58 -27.18 16.21 15.33 0.25 -26.93 16 18 C 0.06 1.38 3.71 30.35 0.11 1.49 16 19 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 20 C -0.14 -2.24 6.61 31.61 0.21 -2.03 16 21 C -0.15 -1.91 7.09 31.61 0.22 -1.69 16 22 C 0.03 0.54 7.63 72.48 0.55 1.09 16 23 O -0.39 -11.15 10.91 -130.61 -1.42 -12.57 16 24 C -0.13 -4.51 5.38 30.22 0.16 -4.35 16 25 C 0.15 6.62 6.24 86.49 0.54 7.16 16 26 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 27 H 0.03 1.30 8.06 -2.39 -0.02 1.28 16 28 H 0.04 2.26 6.01 -2.39 -0.01 2.25 16 29 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 3.09 6.33 -2.39 -0.02 3.08 16 31 H 0.06 1.88 8.04 -2.39 -0.02 1.87 16 32 H 0.08 2.08 7.35 -2.39 -0.02 2.07 16 33 H 0.42 7.52 8.60 -92.71 -0.80 6.72 16 34 H 0.06 1.23 7.86 -2.39 -0.02 1.21 16 35 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 0.72 8.14 -2.39 -0.02 0.71 16 38 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.06 2.13 7.85 -2.39 -0.02 2.11 16 41 H 0.08 2.48 7.31 -2.39 -0.02 2.47 16 42 H 0.02 1.17 7.79 -2.39 -0.02 1.15 16 43 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -76.68 331.53 1.85 -74.83 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.20 Total: 12.35 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 4.41 Total: 9.45 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -3.61 Total: -105.63 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.18 Total: -39.50 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.50 kcal Total: -76.68 1.85 -74.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052184460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.728 kcal (2) G-P(sol) polarization free energy of solvation -76.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds