Wall clock time and date at job start Tue Mar 31 2020 06:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47588 * 240.00269 * 3 2 1 5 5 H 1.48503 * 109.47445 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46771 * 120.00531 * 3 2 1 7 7 C 1.38808 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00331 * 160.41247 * 7 2 1 9 9 N 1.36936 * 119.99585 * 340.40671 * 7 2 1 10 10 C 1.50168 * 120.54210 * 336.71988 * 9 7 2 11 11 C 1.46241 * 107.53035 * 109.60880 * 10 9 7 12 12 C 1.52530 * 114.27641 * 58.41683 * 11 10 9 13 13 C 1.50119 * 105.41265 * 270.59042 * 12 11 10 14 14 H 1.09001 * 109.21123 * 337.33362 * 13 12 11 15 15 N 1.46502 * 109.17010 * 218.00458 * 13 12 11 16 16 C 1.34783 * 119.99952 * 153.69796 * 15 13 12 17 17 O 1.21277 * 119.99810 * 359.97438 * 16 15 13 18 18 C 1.50694 * 119.99741 * 179.97438 * 16 15 13 19 19 H 1.09000 * 109.87323 * 304.29848 * 18 16 15 20 20 C 1.54103 * 109.87798 * 65.30962 * 18 16 15 21 21 C 1.54808 * 104.18870 * 121.45199 * 20 18 16 22 22 C 1.54998 * 102.09526 * 20.87650 * 21 20 18 23 23 O 1.43747 * 109.87745 * 183.29085 * 18 16 15 24 24 C 1.54837 * 110.81841 * 97.68031 * 13 12 11 25 25 C 1.43437 * 120.53668 * 156.74306 * 9 7 2 26 26 H 0.97005 * 120.00130 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.84266 * 350.10899 * 10 9 7 28 28 H 1.08998 * 109.90561 * 229.15365 * 10 9 7 29 29 H 1.08998 * 108.52311 * 297.17407 * 11 10 9 30 30 H 1.09004 * 108.52316 * 179.65371 * 11 10 9 31 31 H 1.08996 * 110.25149 * 151.60984 * 12 11 10 32 32 H 1.08999 * 110.36666 * 29.62173 * 12 11 10 33 33 H 0.96989 * 120.00383 * 333.69394 * 15 13 12 34 34 H 1.08999 * 110.48308 * 240.12714 * 20 18 16 35 35 H 1.09001 * 110.48771 * 2.64204 * 20 18 16 36 36 H 1.08999 * 110.91001 * 139.08079 * 21 20 18 37 37 H 1.09006 * 110.90827 * 262.64222 * 21 20 18 38 38 H 1.09006 * 110.61193 * 81.47895 * 22 21 20 39 39 H 1.08999 * 110.61823 * 204.31646 * 22 21 20 40 40 H 1.09000 * 109.35858 * 81.33947 * 24 13 12 41 41 H 1.09004 * 109.36180 * 200.92740 * 24 13 12 42 42 H 1.08999 * 108.15926 * 149.82737 * 25 9 7 43 43 H 1.09004 * 108.15494 * 33.26403 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0433 -1.2290 -0.3141 9 7 1.3850 -2.3538 0.3966 10 6 0.1860 -2.2990 1.2990 11 6 -0.9804 -2.6847 0.5057 12 6 -0.8820 -4.0721 -0.1204 13 6 -0.2313 -3.8615 -1.4568 14 1 -0.3828 -2.8287 -1.7707 15 7 -0.8466 -4.7585 -2.4381 16 6 -0.8465 -4.4292 -3.7451 17 8 -0.3376 -3.3902 -4.1087 18 6 -1.4789 -5.3522 -4.7546 19 1 -1.0336 -6.3443 -4.6797 20 6 -2.9973 -5.4392 -4.5061 21 6 -3.6276 -4.9639 -5.8378 22 6 -2.4670 -5.1805 -6.8420 23 8 -1.2892 -4.8301 -6.0804 24 6 1.2874 -4.1535 -1.3815 25 6 1.8651 -3.6323 -0.0421 26 1 -0.4850 0.8401 0.0004 27 1 0.0557 -1.2860 1.6801 28 1 0.3146 -2.9930 2.1296 29 1 -1.1140 -1.9537 -0.2917 30 1 -1.8608 -2.6564 1.1478 31 1 -1.8763 -4.4999 -0.2481 32 1 -0.2678 -4.7253 0.4994 33 1 -1.2539 -5.5893 -2.1474 34 1 -3.2903 -6.4667 -4.2906 35 1 -3.2882 -4.7808 -3.6875 36 1 -4.4894 -5.5772 -6.1010 37 1 -3.9041 -3.9109 -5.7833 38 1 -2.4218 -6.2231 -7.1571 39 1 -2.5788 -4.5244 -7.7051 40 1 1.4526 -5.2286 -1.4521 41 1 1.7924 -3.6572 -2.2103 42 1 1.6391 -4.3643 0.7331 43 1 2.9491 -3.5727 -0.1398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052184461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:22 Heat of formation + Delta-G solvation = -53.366297 kcal Electronic energy + Delta-G solvation = -23579.365831 eV Core-core repulsion = 20239.384485 eV Total energy + Delta-G solvation = -3339.981346 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.21432 -38.66569 -37.30044 -34.55623 -32.59471 -31.98099 -31.52612 -30.39651 -29.04121 -26.10370 -24.22696 -23.70912 -22.55100 -21.85450 -20.37788 -19.71630 -19.07418 -17.34801 -16.73083 -16.50566 -15.89189 -15.14875 -14.91329 -14.86364 -14.33093 -13.82850 -13.75509 -13.62683 -13.44233 -13.13173 -12.40142 -12.20407 -11.94983 -11.81766 -11.79179 -11.45206 -11.40361 -11.20084 -11.10215 -10.72328 -10.55050 -10.34804 -10.19401 -10.08688 -9.98212 -9.71528 -9.46012 -9.31314 -9.11346 -8.52582 -8.30504 -6.65218 -5.72026 -3.10538 2.94694 3.22575 3.46602 3.51449 3.53160 3.99248 4.33881 4.58908 4.62773 4.69446 4.91901 4.99658 5.25212 5.39109 5.40556 5.44410 5.47750 5.54654 5.60375 5.71833 5.77800 5.84714 5.91641 6.05521 6.30401 6.34479 6.43979 6.52042 6.64188 6.75075 6.91568 6.94483 6.97292 7.08038 7.20099 7.26005 7.62906 7.81114 7.92716 8.01933 8.49975 8.65188 9.26383 9.93770 10.45861 11.35919 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.004658 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.351894 B = 6010.268839 C = 6484.264072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.120 4.120 13 C 0.156 3.844 14 H 0.103 0.897 15 N -0.727 5.727 16 C 0.504 3.496 17 O -0.511 6.511 18 C 0.059 3.941 19 H 0.090 0.910 20 C -0.147 4.147 21 C -0.154 4.154 22 C 0.043 3.957 23 O -0.347 6.347 24 C -0.151 4.151 25 C 0.162 3.838 26 H 0.252 0.748 27 H 0.090 0.910 28 H 0.006 0.994 29 H 0.103 0.897 30 H 0.029 0.971 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.390 0.610 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.028 0.972 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.579 -14.734 -5.989 18.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.042 3.958 11 C -0.169 4.169 12 C -0.158 4.158 13 C 0.054 3.946 14 H 0.121 0.879 15 N -0.380 5.380 16 C 0.288 3.712 17 O -0.385 6.385 18 C -0.002 4.002 19 H 0.107 0.893 20 C -0.185 4.185 21 C -0.191 4.191 22 C -0.033 4.033 23 O -0.265 6.265 24 C -0.194 4.194 25 C 0.032 3.968 26 H 0.063 0.937 27 H 0.109 0.891 28 H 0.024 0.976 29 H 0.121 0.879 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.222 0.778 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.046 0.954 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.105 -13.651 -6.323 17.088 hybrid contribution -0.044 0.216 -0.031 0.223 sum -8.148 -13.435 -6.354 16.949 Atomic orbital electron populations 1.69946 1.05087 1.25300 1.54233 1.24872 0.95225 0.98197 1.01112 0.86394 0.78988 0.83585 0.77989 1.21012 1.21750 1.21243 1.19166 0.93675 0.85308 1.39761 0.91524 1.44263 1.33696 1.00902 1.52088 1.20157 0.85253 1.00542 0.89869 1.20936 0.98445 0.95041 1.02441 1.21358 0.98669 0.99727 0.96070 1.21274 0.92061 0.94944 0.86364 0.87942 1.46450 1.60057 1.24793 1.06703 1.20354 0.80404 0.87189 0.83303 1.90778 1.43766 1.24637 1.79271 1.22672 0.96039 0.96730 0.84803 0.89266 1.22938 0.93004 1.03009 0.99538 1.23133 0.98660 1.02981 0.94361 1.23647 0.84035 1.00362 0.95299 1.89080 1.39220 1.78266 1.19885 1.23307 0.95386 0.98491 1.02191 1.20349 0.96391 0.88198 0.91842 0.93745 0.89146 0.97604 0.87921 0.95217 0.92904 0.91895 0.77755 0.89766 0.89683 0.89914 0.90097 0.92049 0.88656 0.93704 0.92548 0.95351 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.50 9.43 55.49 0.52 -24.98 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 22.25 29.60 -169.99 -5.03 17.22 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.92 9.63 -15.06 -0.14 -7.07 16 8 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 9 N -0.59 -14.58 2.60 -175.08 -0.46 -15.04 16 10 C 0.17 3.82 5.25 -5.20 -0.03 3.80 16 11 C -0.13 -2.74 5.02 -30.18 -0.15 -2.89 16 12 C -0.12 -2.10 5.33 -28.40 -0.15 -2.25 16 13 C 0.16 3.03 2.24 -68.39 -0.15 2.87 16 14 H 0.10 2.58 6.22 -51.93 -0.32 2.26 16 15 N -0.73 -11.33 4.93 -54.26 -0.27 -11.60 16 16 C 0.50 8.89 6.91 -10.99 -0.08 8.81 16 17 O -0.51 -12.11 16.17 -14.01 -0.23 -12.33 16 18 C 0.06 0.77 3.84 -27.31 -0.10 0.67 16 19 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 20 C -0.15 -1.42 6.62 -25.20 -0.17 -1.58 16 21 C -0.15 -1.38 7.16 -24.72 -0.18 -1.56 16 22 C 0.04 0.44 7.72 38.21 0.29 0.73 16 23 O -0.35 -5.30 10.75 -54.80 -0.59 -5.89 16 24 C -0.15 -3.03 6.00 -24.76 -0.15 -3.18 16 25 C 0.16 3.45 5.17 -4.66 -0.02 3.42 16 26 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.09 2.35 6.05 -51.92 -0.31 2.03 16 28 H 0.01 0.12 8.13 -51.93 -0.42 -0.30 16 29 H 0.10 2.59 5.29 -51.93 -0.27 2.32 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.79 7.86 -51.93 -0.41 0.38 16 32 H 0.06 1.05 6.30 -51.93 -0.33 0.72 16 33 H 0.39 4.48 8.50 -40.82 -0.35 4.13 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.03 0.54 6.90 -51.93 -0.36 0.19 16 43 H 0.03 0.72 7.99 -51.93 -0.41 0.30 16 LS Contribution 330.97 15.07 4.99 4.99 Total: -1.00 -33.12 330.97 -9.12 -42.23 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -6.94 Total: 3.59 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.12 Total: 1.80 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.20 Total: -51.61 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.82 Total: -18.22 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.12 -9.12 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052184461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.132 kcal (2) G-P(sol) polarization free energy of solvation -33.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds