Wall clock time and date at job start Tue Mar 31 2020 06:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47588 * 240.00269 * 3 2 1 5 5 H 1.48503 * 109.47445 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46771 * 120.00531 * 3 2 1 7 7 C 1.38808 * 120.00222 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00331 * 160.41247 * 7 2 1 9 9 N 1.36936 * 119.99585 * 340.40671 * 7 2 1 10 10 C 1.50168 * 120.54210 * 336.71988 * 9 7 2 11 11 C 1.46241 * 107.53035 * 109.60880 * 10 9 7 12 12 C 1.52530 * 114.27641 * 58.41683 * 11 10 9 13 13 C 1.50119 * 105.41265 * 270.59042 * 12 11 10 14 14 H 1.09001 * 109.21123 * 337.33362 * 13 12 11 15 15 N 1.46502 * 109.17010 * 218.00458 * 13 12 11 16 16 C 1.34783 * 119.99952 * 153.69796 * 15 13 12 17 17 O 1.21277 * 119.99810 * 359.97438 * 16 15 13 18 18 C 1.50694 * 119.99741 * 179.97438 * 16 15 13 19 19 H 1.09000 * 109.87323 * 304.29848 * 18 16 15 20 20 C 1.54103 * 109.87798 * 65.30962 * 18 16 15 21 21 C 1.54808 * 104.18870 * 121.45199 * 20 18 16 22 22 C 1.54998 * 102.09526 * 20.87650 * 21 20 18 23 23 O 1.43747 * 109.87745 * 183.29085 * 18 16 15 24 24 C 1.54837 * 110.81841 * 97.68031 * 13 12 11 25 25 C 1.43437 * 120.53668 * 156.74306 * 9 7 2 26 26 H 0.97005 * 120.00130 * 359.97438 * 1 2 3 27 27 H 1.09008 * 109.84266 * 350.10899 * 10 9 7 28 28 H 1.08998 * 109.90561 * 229.15365 * 10 9 7 29 29 H 1.08998 * 108.52311 * 297.17407 * 11 10 9 30 30 H 1.09004 * 108.52316 * 179.65371 * 11 10 9 31 31 H 1.08996 * 110.25149 * 151.60984 * 12 11 10 32 32 H 1.08999 * 110.36666 * 29.62173 * 12 11 10 33 33 H 0.96989 * 120.00383 * 333.69394 * 15 13 12 34 34 H 1.08999 * 110.48308 * 240.12714 * 20 18 16 35 35 H 1.09001 * 110.48771 * 2.64204 * 20 18 16 36 36 H 1.08999 * 110.91001 * 139.08079 * 21 20 18 37 37 H 1.09006 * 110.90827 * 262.64222 * 21 20 18 38 38 H 1.09006 * 110.61193 * 81.47895 * 22 21 20 39 39 H 1.08999 * 110.61823 * 204.31646 * 22 21 20 40 40 H 1.09000 * 109.35858 * 81.33947 * 24 13 12 41 41 H 1.09004 * 109.36180 * 200.92740 * 24 13 12 42 42 H 1.08999 * 108.15926 * 149.82737 * 25 9 7 43 43 H 1.09004 * 108.15494 * 33.26403 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0433 -1.2290 -0.3141 9 7 1.3850 -2.3538 0.3966 10 6 0.1860 -2.2990 1.2990 11 6 -0.9804 -2.6847 0.5057 12 6 -0.8820 -4.0721 -0.1204 13 6 -0.2313 -3.8615 -1.4568 14 1 -0.3828 -2.8287 -1.7707 15 7 -0.8466 -4.7585 -2.4381 16 6 -0.8465 -4.4292 -3.7451 17 8 -0.3376 -3.3902 -4.1087 18 6 -1.4789 -5.3522 -4.7546 19 1 -1.0336 -6.3443 -4.6797 20 6 -2.9973 -5.4392 -4.5061 21 6 -3.6276 -4.9639 -5.8378 22 6 -2.4670 -5.1805 -6.8420 23 8 -1.2892 -4.8301 -6.0804 24 6 1.2874 -4.1535 -1.3815 25 6 1.8651 -3.6323 -0.0421 26 1 -0.4850 0.8401 0.0004 27 1 0.0557 -1.2860 1.6801 28 1 0.3146 -2.9930 2.1296 29 1 -1.1140 -1.9537 -0.2917 30 1 -1.8608 -2.6564 1.1478 31 1 -1.8763 -4.4999 -0.2481 32 1 -0.2678 -4.7253 0.4994 33 1 -1.2539 -5.5893 -2.1474 34 1 -3.2903 -6.4667 -4.2906 35 1 -3.2882 -4.7808 -3.6875 36 1 -4.4894 -5.5772 -6.1010 37 1 -3.9041 -3.9109 -5.7833 38 1 -2.4218 -6.2231 -7.1571 39 1 -2.5788 -4.5244 -7.7051 40 1 1.4526 -5.2286 -1.4521 41 1 1.7924 -3.6572 -2.2103 42 1 1.6391 -4.3643 0.7331 43 1 2.9491 -3.5727 -0.1398 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052184461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:21 Heat of formation + Delta-G solvation = -76.457515 kcal Electronic energy + Delta-G solvation = -23580.367142 eV Core-core repulsion = 20239.384485 eV Total energy + Delta-G solvation = -3340.982656 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.43597 -39.98993 -38.84706 -36.25406 -34.15590 -33.31739 -33.10148 -31.91636 -30.24347 -27.91971 -25.76948 -25.24373 -23.97508 -22.67180 -21.96842 -21.14576 -20.77364 -18.61423 -18.52757 -17.46557 -17.24405 -16.92582 -16.34619 -16.18611 -15.82114 -15.55028 -15.15812 -14.94835 -14.69907 -14.56864 -14.02658 -13.91970 -13.49583 -13.23207 -13.15351 -12.76492 -12.68312 -12.63529 -12.39913 -12.24447 -12.11885 -11.94924 -11.83373 -11.74079 -11.55409 -11.20316 -11.12569 -11.10074 -10.44740 -10.42919 -9.95235 -8.64323 -7.83788 -5.23495 1.45083 1.45687 1.52460 1.61731 2.02983 2.53471 3.05445 3.29158 3.49740 3.63061 3.74314 3.87948 4.03279 4.04193 4.14580 4.27080 4.34264 4.43171 4.50302 4.63663 4.71978 4.74967 4.77428 4.88022 4.89595 4.90076 5.00035 5.07983 5.14237 5.18229 5.29345 5.31121 5.42366 5.51527 5.66163 5.68146 5.78862 5.83510 6.21227 6.42459 6.66432 7.19308 7.36705 7.93228 8.40205 9.20255 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.021661 B = 0.004658 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.351894 B = 6010.268839 C = 6484.264072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.043 4.043 3 Si 0.955 3.045 4 H -0.288 1.288 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.264 4.264 8 H 0.056 0.944 9 N -0.603 5.603 10 C 0.167 3.833 11 C -0.124 4.124 12 C -0.104 4.104 13 C 0.168 3.832 14 H 0.036 0.964 15 N -0.707 5.707 16 C 0.495 3.505 17 O -0.586 6.586 18 C 0.063 3.937 19 H 0.126 0.874 20 C -0.140 4.140 21 C -0.152 4.152 22 C 0.036 3.964 23 O -0.394 6.394 24 C -0.142 4.142 25 C 0.156 3.844 26 H 0.246 0.754 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.055 0.945 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.416 0.584 34 H 0.130 0.870 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.011 0.989 42 H 0.063 0.937 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.025 -18.371 -5.498 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.239 4.239 3 Si 0.784 3.216 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.395 4.395 8 H 0.074 0.926 9 N -0.325 5.325 10 C 0.044 3.956 11 C -0.163 4.163 12 C -0.142 4.142 13 C 0.063 3.937 14 H 0.054 0.946 15 N -0.360 5.360 16 C 0.282 3.718 17 O -0.465 6.465 18 C 0.002 3.998 19 H 0.143 0.857 20 C -0.178 4.178 21 C -0.189 4.189 22 C -0.040 4.040 23 O -0.313 6.313 24 C -0.184 4.184 25 C 0.027 3.973 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.254 0.746 34 H 0.148 0.852 35 H 0.089 0.911 36 H 0.137 0.863 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.030 0.970 42 H 0.081 0.919 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -9.576 -17.361 -5.807 20.660 hybrid contribution 0.417 1.326 -0.222 1.407 sum -9.159 -16.036 -6.029 19.426 Atomic orbital electron populations 1.70134 1.05874 1.25126 1.54992 1.25516 0.96041 1.00724 1.01646 0.85537 0.77816 0.80360 0.77877 1.21487 1.21892 1.20202 1.19351 0.93562 0.86977 1.39582 0.92582 1.44442 1.34152 1.01250 1.52666 1.20127 0.85492 0.99360 0.90622 1.20750 0.98297 0.96251 1.01044 1.21263 1.00922 0.97804 0.94196 1.20796 0.92281 0.92395 0.88202 0.94609 1.46147 1.59123 1.25062 1.05710 1.21441 0.79150 0.86847 0.84403 1.90748 1.47142 1.28125 1.80527 1.22847 0.98160 0.96101 0.82680 0.85685 1.23015 0.90140 1.05422 0.99245 1.23159 0.99464 1.02453 0.93826 1.23942 0.82781 1.02147 0.95130 1.89041 1.41825 1.79309 1.21175 1.23188 0.95340 1.00152 0.99701 1.20497 0.95932 0.87544 0.93290 0.94501 0.92700 0.94676 0.92624 0.93405 0.89294 0.89561 0.74581 0.85224 0.91084 0.86284 0.92329 0.88986 0.88600 0.89804 0.97006 0.91865 0.95658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.30 9.43 21.65 0.20 -54.10 16 2 C -0.04 -2.50 4.91 84.86 0.42 -2.08 16 3 Si 0.95 47.38 29.60 68.60 2.03 49.41 16 4 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 5 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.26 -15.20 9.63 84.03 0.81 -14.39 16 8 H 0.06 3.26 7.89 -2.91 -0.02 3.24 16 9 N -0.60 -30.33 2.60 -707.84 -1.84 -32.17 16 10 C 0.17 7.70 5.25 83.58 0.44 8.14 16 11 C -0.12 -5.20 5.02 28.36 0.14 -5.05 16 12 C -0.10 -3.35 5.33 29.51 0.16 -3.19 16 13 C 0.17 6.46 2.24 44.69 0.10 6.56 16 14 H 0.04 1.91 6.22 -2.39 -0.01 1.89 16 15 N -0.71 -20.89 4.93 -443.96 -2.19 -23.08 16 16 C 0.49 17.52 6.91 87.65 0.61 18.12 16 17 O -0.59 -29.58 16.17 15.69 0.25 -29.32 16 18 C 0.06 1.52 3.84 30.22 0.12 1.64 16 19 H 0.13 2.11 8.14 -2.39 -0.02 2.09 16 20 C -0.14 -2.23 6.62 31.58 0.21 -2.02 16 21 C -0.15 -2.33 7.16 31.89 0.23 -2.10 16 22 C 0.04 0.65 7.72 72.67 0.56 1.21 16 23 O -0.39 -11.87 10.75 -130.27 -1.40 -13.27 16 24 C -0.14 -5.62 6.00 31.87 0.19 -5.43 16 25 C 0.16 6.52 5.17 87.59 0.45 6.97 16 26 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 27 H 0.05 2.91 6.05 -2.38 -0.01 2.90 16 28 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 29 H 0.06 2.92 5.29 -2.39 -0.01 2.91 16 30 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.09 2.24 7.86 -2.39 -0.02 2.22 16 32 H 0.09 2.44 6.30 -2.39 -0.02 2.43 16 33 H 0.42 7.86 8.50 -92.72 -0.79 7.07 16 34 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.07 1.35 7.69 -2.39 -0.02 1.33 16 36 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 2.64 8.12 -2.39 -0.02 2.62 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 42 H 0.06 2.21 6.90 -2.39 -0.02 2.19 16 43 H 0.03 1.08 7.99 -2.39 -0.02 1.06 16 Total: -1.00 -80.82 330.97 1.70 -79.12 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.22 Total: 15.04 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 4.43 Total: 8.37 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -3.83 Total: -109.34 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.15 Total: -42.59 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -80.82 1.70 -79.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052184461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.667 kcal (2) G-P(sol) polarization free energy of solvation -80.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds