Wall clock time and date at job start Tue Mar 31 2020 06:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48495 * 109.46960 * 269.99573 * 3 2 1 5 5 H 1.48504 * 109.46959 * 29.99585 * 3 2 1 6 6 H 1.48497 * 109.47125 * 149.99372 * 3 2 1 7 7 C 1.38808 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00214 * 160.00884 * 7 2 1 9 9 N 1.36943 * 120.00041 * 339.72945 * 7 2 1 10 10 C 1.50165 * 120.53520 * 337.20990 * 9 7 2 11 11 C 1.46238 * 107.53716 * 109.56269 * 10 9 7 12 12 C 1.52527 * 114.27324 * 58.40361 * 11 10 9 13 13 C 1.50128 * 105.41893 * 270.59574 * 12 11 10 14 14 H 1.09003 * 109.20263 * 337.38654 * 13 12 11 15 15 N 1.46498 * 109.21000 * 218.03134 * 13 12 11 16 16 C 1.34776 * 120.00166 * 154.99943 * 15 13 12 17 17 O 1.21290 * 119.99520 * 359.97438 * 16 15 13 18 18 C 1.50692 * 120.00364 * 179.97438 * 16 15 13 19 19 H 1.09003 * 110.33285 * 57.25062 * 18 16 15 20 20 C 1.54482 * 110.37188 * 295.00198 * 18 16 15 21 21 C 1.54510 * 104.06247 * 217.18771 * 20 18 16 22 22 C 1.54481 * 104.06243 * 359.97438 * 21 20 18 23 23 O 1.44425 * 110.37543 * 179.61923 * 18 16 15 24 24 C 1.54842 * 110.81309 * 97.68119 * 13 12 11 25 25 C 1.43433 * 120.53516 * 156.92732 * 9 7 2 26 26 H 0.97002 * 119.99769 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.84398 * 229.07270 * 10 9 7 28 28 H 1.09001 * 109.84932 * 349.98527 * 10 9 7 29 29 H 1.08997 * 108.52530 * 179.64526 * 11 10 9 30 30 H 1.09001 * 108.51981 * 297.16992 * 11 10 9 31 31 H 1.08998 * 110.25105 * 29.57445 * 12 11 10 32 32 H 1.09000 * 110.24892 * 151.62434 * 12 11 10 33 33 H 0.97000 * 119.99981 * 334.99318 * 15 13 12 34 34 H 1.08996 * 110.50830 * 335.83107 * 20 18 16 35 35 H 1.08998 * 110.51388 * 98.40695 * 20 18 16 36 36 H 1.09002 * 110.51508 * 118.63981 * 21 20 18 37 37 H 1.08996 * 110.51486 * 241.35632 * 21 20 18 38 38 H 1.09003 * 110.37183 * 142.80798 * 22 21 20 39 39 H 1.08999 * 110.37792 * 265.03827 * 22 21 20 40 40 H 1.08998 * 109.35412 * 81.34612 * 24 13 12 41 41 H 1.09004 * 109.35655 * 201.06547 * 24 13 12 42 42 H 1.08992 * 108.16344 * 33.30648 * 25 9 7 43 43 H 1.08998 * 108.15836 * 149.88058 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0413 -1.2305 -0.3192 9 7 1.3891 -2.3512 0.4119 10 6 0.1927 -2.2895 1.3174 11 6 -0.9754 -2.6855 0.5317 12 6 -0.8761 -4.0788 -0.0809 13 6 -0.2299 -3.8804 -1.4214 14 1 -0.3837 -2.8508 -1.7446 15 7 -0.8463 -4.7876 -2.3926 16 6 -0.8272 -4.4833 -3.7055 17 8 -0.3002 -3.4581 -4.0827 18 6 -1.4607 -5.4167 -4.7046 19 1 -2.5107 -5.5774 -4.4600 20 6 -0.7040 -6.7631 -4.7376 21 6 -0.7271 -7.1703 -6.2279 22 6 -1.4955 -6.0220 -6.9189 23 8 -1.3292 -4.8866 -6.0416 24 6 1.2896 -4.1687 -1.3478 25 6 1.8671 -3.6327 -0.0199 26 1 -0.4850 0.8401 -0.0004 27 1 0.3259 -2.9757 2.1538 28 1 0.0623 -1.2734 1.6897 29 1 -1.8537 -2.6525 1.1762 30 1 -1.1129 -1.9627 -0.2726 31 1 -0.2576 -4.7227 0.5444 32 1 -1.8700 -4.5097 -0.2013 33 1 -1.2680 -5.6073 -2.0909 34 1 0.3219 -6.6331 -4.3930 35 1 -1.2193 -7.5058 -4.1286 36 1 0.2874 -7.2416 -6.6202 37 1 -1.2551 -8.1150 -6.3576 38 1 -1.0638 -5.8114 -7.8974 39 1 -2.5507 -6.2769 -7.0174 40 1 1.4566 -5.2441 -1.4083 41 1 1.7913 -3.6777 -2.1817 42 1 2.9502 -3.5733 -0.1256 43 1 1.6468 -4.3588 0.7626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052184462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:25 Heat of formation + Delta-G solvation = -53.340663 kcal Electronic energy + Delta-G solvation = -23533.960233 eV Core-core repulsion = 20193.979999 eV Total energy + Delta-G solvation = -3339.980234 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.19566 -38.71075 -37.34127 -34.56610 -32.58318 -31.98922 -31.55651 -30.39561 -29.06157 -26.11340 -24.34349 -23.73861 -22.60074 -21.68369 -20.39455 -19.75399 -19.06578 -17.33016 -16.75358 -16.54839 -15.86621 -15.08527 -14.96084 -14.87562 -14.37519 -14.09388 -13.76280 -13.70053 -13.19618 -13.12732 -12.44524 -12.20985 -12.00622 -11.86818 -11.79421 -11.55364 -11.40661 -11.21390 -10.98015 -10.71655 -10.56884 -10.33716 -10.19596 -10.06471 -9.98274 -9.72119 -9.46609 -9.30849 -9.21032 -8.53883 -8.30665 -6.65764 -5.72415 -3.10322 2.93763 3.17524 3.45298 3.52389 3.54279 4.02396 4.35261 4.58007 4.59197 4.69644 4.91017 4.95835 5.20712 5.35195 5.39100 5.44219 5.44845 5.55230 5.59569 5.70586 5.76624 5.79617 5.90767 6.04267 6.29204 6.34692 6.43441 6.51087 6.57870 6.74314 6.91097 6.93762 6.97022 7.06597 7.19144 7.25476 7.62668 7.81176 7.90855 8.01807 8.49587 8.62905 9.25999 9.93694 10.45588 11.35574 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.004513 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.177185 B = 6202.919779 C = 6704.517409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.120 4.120 13 C 0.156 3.844 14 H 0.102 0.898 15 N -0.726 5.726 16 C 0.509 3.491 17 O -0.510 6.510 18 C 0.056 3.944 19 H 0.091 0.909 20 C -0.144 4.144 21 C -0.153 4.153 22 C 0.040 3.960 23 O -0.343 6.343 24 C -0.151 4.151 25 C 0.162 3.838 26 H 0.252 0.748 27 H 0.006 0.994 28 H 0.091 0.909 29 H 0.030 0.970 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.390 0.610 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.033 0.967 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 -16.914 -6.081 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.042 3.958 11 C -0.169 4.169 12 C -0.158 4.158 13 C 0.054 3.946 14 H 0.120 0.880 15 N -0.378 5.378 16 C 0.293 3.707 17 O -0.384 6.384 18 C -0.005 4.005 19 H 0.108 0.892 20 C -0.182 4.182 21 C -0.191 4.191 22 C -0.037 4.037 23 O -0.261 6.261 24 C -0.193 4.193 25 C 0.032 3.968 26 H 0.062 0.938 27 H 0.024 0.976 28 H 0.109 0.891 29 H 0.048 0.952 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.223 0.777 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.098 -15.733 -6.399 17.733 hybrid contribution 0.031 0.132 -0.089 0.162 sum -5.068 -15.601 -6.488 17.640 Atomic orbital electron populations 1.69964 1.05100 1.25221 1.54188 1.24867 0.95206 0.98210 1.01138 0.86348 0.79186 0.83929 0.77662 1.21518 1.21673 1.20675 1.19184 0.93875 0.85423 1.39419 0.91517 1.44299 1.34050 1.00785 1.51783 1.20163 0.85250 1.00609 0.89803 1.20935 0.98496 0.94919 1.02562 1.21361 0.98725 0.99769 0.95989 1.21292 0.92075 0.94677 0.86598 0.87978 1.46429 1.59478 1.25658 1.06272 1.20099 0.80655 0.86764 0.83189 1.90791 1.43270 1.25407 1.78913 1.22918 0.99726 0.92579 0.85304 0.89170 1.22910 1.02247 0.95600 0.97489 1.22938 1.02049 0.99197 0.94908 1.23484 0.99450 0.85778 0.94971 1.89324 1.93338 1.29481 1.13946 1.23228 0.95372 0.98450 1.02269 1.20251 0.96418 0.88184 0.91960 0.93779 0.97578 0.89131 0.95160 0.87932 0.91852 0.92833 0.77723 0.89988 0.89710 0.90367 0.90281 0.88769 0.92106 0.93699 0.92526 0.94910 0.95372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.51 9.45 55.49 0.52 -24.99 16 2 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 3 Si 0.90 22.21 29.60 -169.99 -5.03 17.18 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.25 -6.91 9.63 -15.06 -0.14 -7.06 16 8 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 9 N -0.59 -14.54 2.61 -175.41 -0.46 -15.00 16 10 C 0.17 3.82 5.25 -5.21 -0.03 3.79 16 11 C -0.13 -2.75 5.02 -30.19 -0.15 -2.90 16 12 C -0.12 -2.10 5.34 -28.40 -0.15 -2.25 16 13 C 0.16 3.01 2.22 -68.39 -0.15 2.86 16 14 H 0.10 2.57 6.27 -51.93 -0.33 2.25 16 15 N -0.73 -11.24 4.96 -54.25 -0.27 -11.51 16 16 C 0.51 8.96 7.03 -10.99 -0.08 8.88 16 17 O -0.51 -12.08 16.22 -13.67 -0.22 -12.30 16 18 C 0.06 0.73 3.71 -27.11 -0.10 0.63 16 19 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 20 C -0.14 -1.38 6.61 -25.16 -0.17 -1.54 16 21 C -0.15 -1.25 7.09 -25.16 -0.18 -1.43 16 22 C 0.04 0.39 7.63 37.93 0.29 0.68 16 23 O -0.34 -5.25 10.91 -54.45 -0.59 -5.85 16 24 C -0.15 -2.98 5.97 -25.03 -0.15 -3.13 16 25 C 0.16 3.42 5.13 -4.93 -0.03 3.39 16 26 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 28 H 0.09 2.35 6.04 -51.93 -0.31 2.03 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 2.59 5.31 -51.93 -0.28 2.32 16 31 H 0.06 1.05 6.28 -51.93 -0.33 0.72 16 32 H 0.05 0.80 7.85 -51.93 -0.41 0.39 16 33 H 0.39 4.43 8.48 -40.82 -0.35 4.09 16 34 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 42 H 0.03 0.70 7.99 -51.93 -0.41 0.28 16 43 H 0.03 0.54 6.89 -51.93 -0.36 0.18 16 LS Contribution 331.15 15.07 4.99 4.99 Total: -1.00 -33.16 331.15 -9.13 -42.29 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.95 Total: 3.23 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -1.12 Total: 1.95 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.20 Total: -51.49 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.82 Total: -18.15 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.16 -9.13 -42.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052184462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.052 kcal (2) G-P(sol) polarization free energy of solvation -33.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds