Wall clock time and date at job start Tue Mar 31 2020 06:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00277 * 2 1 4 4 H 1.48495 * 109.46960 * 269.99573 * 3 2 1 5 5 H 1.48504 * 109.46959 * 29.99585 * 3 2 1 6 6 H 1.48497 * 109.47125 * 149.99372 * 3 2 1 7 7 C 1.38808 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00214 * 160.00884 * 7 2 1 9 9 N 1.36943 * 120.00041 * 339.72945 * 7 2 1 10 10 C 1.50165 * 120.53520 * 337.20990 * 9 7 2 11 11 C 1.46238 * 107.53716 * 109.56269 * 10 9 7 12 12 C 1.52527 * 114.27324 * 58.40361 * 11 10 9 13 13 C 1.50128 * 105.41893 * 270.59574 * 12 11 10 14 14 H 1.09003 * 109.20263 * 337.38654 * 13 12 11 15 15 N 1.46498 * 109.21000 * 218.03134 * 13 12 11 16 16 C 1.34776 * 120.00166 * 154.99943 * 15 13 12 17 17 O 1.21290 * 119.99520 * 359.97438 * 16 15 13 18 18 C 1.50692 * 120.00364 * 179.97438 * 16 15 13 19 19 H 1.09003 * 110.33285 * 57.25062 * 18 16 15 20 20 C 1.54482 * 110.37188 * 295.00198 * 18 16 15 21 21 C 1.54510 * 104.06247 * 217.18771 * 20 18 16 22 22 C 1.54481 * 104.06243 * 359.97438 * 21 20 18 23 23 O 1.44425 * 110.37543 * 179.61923 * 18 16 15 24 24 C 1.54842 * 110.81309 * 97.68119 * 13 12 11 25 25 C 1.43433 * 120.53516 * 156.92732 * 9 7 2 26 26 H 0.97002 * 119.99769 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.84398 * 229.07270 * 10 9 7 28 28 H 1.09001 * 109.84932 * 349.98527 * 10 9 7 29 29 H 1.08997 * 108.52530 * 179.64526 * 11 10 9 30 30 H 1.09001 * 108.51981 * 297.16992 * 11 10 9 31 31 H 1.08998 * 110.25105 * 29.57445 * 12 11 10 32 32 H 1.09000 * 110.24892 * 151.62434 * 12 11 10 33 33 H 0.97000 * 119.99981 * 334.99318 * 15 13 12 34 34 H 1.08996 * 110.50830 * 335.83107 * 20 18 16 35 35 H 1.08998 * 110.51388 * 98.40695 * 20 18 16 36 36 H 1.09002 * 110.51508 * 118.63981 * 21 20 18 37 37 H 1.08996 * 110.51486 * 241.35632 * 21 20 18 38 38 H 1.09003 * 110.37183 * 142.80798 * 22 21 20 39 39 H 1.08999 * 110.37792 * 265.03827 * 22 21 20 40 40 H 1.08998 * 109.35412 * 81.34612 * 24 13 12 41 41 H 1.09004 * 109.35655 * 201.06547 * 24 13 12 42 42 H 1.08992 * 108.16344 * 33.30648 * 25 9 7 43 43 H 1.08998 * 108.15836 * 149.88058 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7002 7 6 2.0102 -1.2021 0.0005 8 1 3.0413 -1.2305 -0.3192 9 7 1.3891 -2.3512 0.4119 10 6 0.1927 -2.2895 1.3174 11 6 -0.9754 -2.6855 0.5317 12 6 -0.8761 -4.0788 -0.0809 13 6 -0.2299 -3.8804 -1.4214 14 1 -0.3837 -2.8508 -1.7446 15 7 -0.8463 -4.7876 -2.3926 16 6 -0.8272 -4.4833 -3.7055 17 8 -0.3002 -3.4581 -4.0827 18 6 -1.4607 -5.4167 -4.7046 19 1 -2.5107 -5.5774 -4.4600 20 6 -0.7040 -6.7631 -4.7376 21 6 -0.7271 -7.1703 -6.2279 22 6 -1.4955 -6.0220 -6.9189 23 8 -1.3292 -4.8866 -6.0416 24 6 1.2896 -4.1687 -1.3478 25 6 1.8671 -3.6327 -0.0199 26 1 -0.4850 0.8401 -0.0004 27 1 0.3259 -2.9757 2.1538 28 1 0.0623 -1.2734 1.6897 29 1 -1.8537 -2.6525 1.1762 30 1 -1.1129 -1.9627 -0.2726 31 1 -0.2576 -4.7227 0.5444 32 1 -1.8700 -4.5097 -0.2013 33 1 -1.2680 -5.6073 -2.0909 34 1 0.3219 -6.6331 -4.3930 35 1 -1.2193 -7.5058 -4.1286 36 1 0.2874 -7.2416 -6.6202 37 1 -1.2551 -8.1150 -6.3576 38 1 -1.0638 -5.8114 -7.8974 39 1 -2.5507 -6.2769 -7.0174 40 1 1.4566 -5.2441 -1.4083 41 1 1.7913 -3.6777 -2.1817 42 1 2.9502 -3.5733 -0.1256 43 1 1.6468 -4.3588 0.7626 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052184462.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:24 Heat of formation + Delta-G solvation = -76.554394 kcal Electronic energy + Delta-G solvation = -23534.966856 eV Core-core repulsion = 20193.979999 eV Total energy + Delta-G solvation = -3340.986857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.41448 -40.00939 -38.88885 -36.26028 -34.15120 -33.33420 -33.07181 -31.92143 -30.23812 -27.92141 -25.79763 -25.30251 -24.06163 -22.45884 -21.97029 -21.18475 -20.76340 -18.60774 -18.50456 -17.62021 -17.09525 -16.91627 -16.28638 -16.10452 -15.93860 -15.56634 -15.38183 -14.96920 -14.63286 -14.49153 -14.02795 -13.92102 -13.49710 -13.24441 -13.14820 -12.78983 -12.69821 -12.68858 -12.38069 -12.25707 -12.11413 -11.93774 -11.75378 -11.66687 -11.55962 -11.20008 -11.11774 -10.99642 -10.58270 -10.44794 -9.96197 -8.64564 -7.83944 -5.23014 1.43652 1.45836 1.54479 1.60040 1.99195 2.53678 3.10642 3.29261 3.51303 3.62924 3.70585 3.92701 4.03460 4.07833 4.16076 4.23074 4.33680 4.40028 4.50210 4.64286 4.68603 4.75695 4.81100 4.88124 4.90010 4.92623 5.03105 5.08261 5.14543 5.18539 5.29539 5.31067 5.42100 5.51712 5.66384 5.67576 5.77814 5.81279 6.21140 6.42529 6.64815 7.19253 7.34935 7.93494 8.40279 9.20288 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.004513 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.177185 B = 6202.919779 C = 6704.517409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.044 4.044 3 Si 0.954 3.046 4 H -0.297 1.297 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.263 4.263 8 H 0.057 0.943 9 N -0.603 5.603 10 C 0.167 3.833 11 C -0.125 4.125 12 C -0.104 4.104 13 C 0.167 3.833 14 H 0.034 0.966 15 N -0.705 5.705 16 C 0.501 3.499 17 O -0.586 6.586 18 C 0.059 3.941 19 H 0.124 0.876 20 C -0.138 4.138 21 C -0.146 4.146 22 C 0.031 3.969 23 O -0.394 6.394 24 C -0.140 4.140 25 C 0.155 3.845 26 H 0.246 0.754 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.417 0.583 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.011 0.989 42 H 0.025 0.975 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.555 -20.744 -5.492 22.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.240 4.240 3 Si 0.783 3.217 4 H -0.225 1.225 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.394 4.394 8 H 0.074 0.926 9 N -0.325 5.325 10 C 0.044 3.956 11 C -0.164 4.164 12 C -0.142 4.142 13 C 0.063 3.937 14 H 0.053 0.947 15 N -0.358 5.358 16 C 0.288 3.712 17 O -0.465 6.465 18 C -0.001 4.001 19 H 0.142 0.858 20 C -0.176 4.176 21 C -0.184 4.184 22 C -0.045 4.045 23 O -0.313 6.313 24 C -0.182 4.182 25 C 0.027 3.973 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.255 0.745 34 H 0.082 0.918 35 H 0.144 0.856 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.115 0.885 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.030 0.970 42 H 0.043 0.957 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.227 -19.644 -5.785 21.404 hybrid contribution 0.383 1.300 -0.313 1.391 sum -5.844 -18.345 -6.098 20.196 Atomic orbital electron populations 1.70148 1.05907 1.25074 1.55016 1.25508 0.96014 1.00730 1.01711 0.85490 0.78500 0.80765 0.76955 1.22456 1.21420 1.19673 1.19371 0.93758 0.87095 1.39154 0.92559 1.44477 1.34499 1.01166 1.52344 1.20130 0.85496 0.99404 0.90575 1.20753 0.98347 0.96201 1.01113 1.21270 1.00984 0.97797 0.94158 1.20818 0.92382 0.92132 0.88369 0.94718 1.46119 1.58574 1.25864 1.05281 1.21141 0.79430 0.86397 0.84269 1.90761 1.46686 1.28867 1.80173 1.23073 1.01342 0.92430 0.83295 0.85835 1.22972 1.01160 0.94274 0.99211 1.22953 1.02101 0.99883 0.93452 1.23785 1.01323 0.84961 0.94453 1.89287 1.93826 1.32686 1.15539 1.23095 0.95219 1.00182 0.99693 1.20404 0.95960 0.87485 0.93479 0.94507 0.94608 0.92710 0.93385 0.92681 0.89439 0.89266 0.74522 0.91833 0.85558 0.90850 0.86786 0.88516 0.89738 0.89691 0.96989 0.95710 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.39 9.45 21.65 0.20 -54.18 16 2 C -0.04 -2.53 4.90 84.86 0.42 -2.11 16 3 Si 0.95 47.33 29.60 68.60 2.03 49.37 16 4 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.26 -15.12 9.63 84.03 0.81 -14.31 16 8 H 0.06 3.27 7.89 -2.91 -0.02 3.24 16 9 N -0.60 -30.21 2.61 -708.88 -1.85 -32.06 16 10 C 0.17 7.68 5.25 83.58 0.44 8.12 16 11 C -0.12 -5.23 5.02 28.36 0.14 -5.08 16 12 C -0.10 -3.34 5.34 29.51 0.16 -3.18 16 13 C 0.17 6.41 2.22 44.70 0.10 6.51 16 14 H 0.03 1.85 6.27 -2.39 -0.01 1.83 16 15 N -0.70 -20.68 4.96 -443.95 -2.20 -22.88 16 16 C 0.50 17.70 7.03 87.65 0.62 18.32 16 17 O -0.59 -29.54 16.22 15.31 0.25 -29.29 16 18 C 0.06 1.44 3.71 30.35 0.11 1.55 16 19 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 20 C -0.14 -2.15 6.61 31.61 0.21 -1.94 16 21 C -0.15 -1.88 7.09 31.61 0.22 -1.66 16 22 C 0.03 0.54 7.63 72.49 0.55 1.09 16 23 O -0.39 -11.96 10.91 -130.61 -1.43 -13.38 16 24 C -0.14 -5.47 5.97 31.70 0.19 -5.28 16 25 C 0.16 6.44 5.13 87.42 0.45 6.88 16 26 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 27 H 0.04 1.43 8.13 -2.38 -0.02 1.41 16 28 H 0.05 2.91 6.04 -2.39 -0.01 2.89 16 29 H 0.05 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.05 2.89 5.31 -2.39 -0.01 2.88 16 31 H 0.09 2.45 6.28 -2.39 -0.02 2.44 16 32 H 0.09 2.25 7.85 -2.39 -0.02 2.23 16 33 H 0.42 7.73 8.48 -92.71 -0.79 6.94 16 34 H 0.06 1.24 7.86 -2.39 -0.02 1.22 16 35 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 41 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.02 1.05 7.99 -2.39 -0.02 1.03 16 43 H 0.06 2.19 6.89 -2.39 -0.02 2.17 16 Total: -1.00 -81.03 331.15 1.64 -79.40 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.22 Total: 14.12 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 4.41 Total: 8.91 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -3.85 Total: -109.12 kcal Atomic # 8 Polarization: -41.50 SS G_CDS: -1.18 Total: -42.68 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.37 kcal Total: -81.03 1.64 -79.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052184462.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.843 kcal (2) G-P(sol) polarization free energy of solvation -81.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds