Wall clock time and date at job start Tue Mar 31 2020 06:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86795 * 120.00000 * 2 1 4 4 H 1.48501 * 109.47235 * 239.99794 * 3 2 1 5 5 H 1.48500 * 109.47472 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46842 * 120.00277 * 3 2 1 7 7 C 1.38815 * 119.99626 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99855 * 195.64776 * 7 2 1 9 9 N 1.36934 * 120.00103 * 15.65224 * 7 2 1 10 10 C 1.47603 * 118.64433 * 26.50090 * 9 7 2 11 11 C 1.53945 * 112.14304 * 137.84567 * 10 9 7 12 12 C 1.50668 * 109.98674 * 319.46591 * 11 10 9 13 13 C 1.52567 * 109.46856 * 92.02814 * 12 11 10 14 14 H 1.09005 * 108.50903 * 36.04230 * 13 12 11 15 15 N 1.46503 * 108.51562 * 153.68586 * 13 12 11 16 16 C 1.34773 * 120.00642 * 207.31286 * 15 13 12 17 17 O 1.21282 * 119.99634 * 0.02562 * 16 15 13 18 18 C 1.50694 * 120.00308 * 180.02562 * 16 15 13 19 19 H 1.09005 * 109.86923 * 303.99606 * 18 16 15 20 20 C 1.54100 * 109.87820 * 65.00166 * 18 16 15 21 21 C 1.54802 * 104.18819 * 121.45424 * 20 18 16 22 22 C 1.54997 * 102.09181 * 20.88274 * 21 20 18 23 23 O 1.43735 * 109.88082 * 182.83481 * 18 16 15 24 24 C 1.47095 * 114.21241 * 274.86604 * 13 12 11 25 25 C 1.44577 * 118.64552 * 206.47724 * 9 7 2 26 26 H 0.96999 * 119.99716 * 0.02562 * 1 2 3 27 27 H 1.09011 * 108.94175 * 258.53257 * 10 9 7 28 28 H 1.08995 * 108.95040 * 17.24165 * 10 9 7 29 29 H 1.08999 * 109.36607 * 79.63051 * 11 10 9 30 30 H 1.09004 * 109.36520 * 199.23977 * 11 10 9 31 31 H 1.09004 * 109.59923 * 331.93498 * 12 11 10 32 32 H 1.08996 * 109.27024 * 211.92968 * 12 11 10 33 33 H 0.97000 * 119.99056 * 27.31703 * 15 13 12 34 34 H 1.09001 * 110.48357 * 240.13102 * 20 18 16 35 35 H 1.08997 * 110.48892 * 2.77710 * 20 18 16 36 36 H 1.09005 * 110.91205 * 139.07769 * 21 20 18 37 37 H 1.09001 * 110.90913 * 262.68048 * 21 20 18 38 38 H 1.08990 * 110.62233 * 81.47834 * 22 21 20 39 39 H 1.09008 * 110.62044 * 204.47614 * 22 21 20 40 40 H 1.09004 * 109.32831 * 182.97973 * 24 13 12 41 41 H 1.08997 * 109.32673 * 302.63414 * 24 13 12 42 42 H 1.08993 * 109.45456 * 150.70628 * 25 9 7 43 43 H 1.09009 * 109.44779 * 30.78545 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0603 -1.2197 0.2517 9 7 1.3636 -2.3659 -0.3210 10 6 0.1792 -2.2985 -1.1993 11 6 0.1712 -3.4237 -2.2499 12 6 1.5615 -3.6322 -2.7919 13 6 2.2710 -4.7058 -1.9724 14 1 1.5401 -5.4622 -1.6863 15 7 3.2875 -5.3392 -2.8161 16 6 3.6627 -6.6117 -2.5790 17 8 3.1585 -7.2327 -1.6674 18 6 4.7087 -7.2630 -3.4465 19 1 4.4033 -7.2183 -4.4920 20 6 6.0607 -6.5462 -3.2646 21 6 7.0183 -7.6605 -2.7769 22 6 6.2882 -8.9445 -3.2466 23 8 4.8931 -8.6311 -3.0462 24 6 2.9231 -4.2020 -0.7539 25 6 1.8694 -3.6100 0.2144 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7197 -2.3787 -0.5879 28 1 0.1732 -1.3369 -1.7123 29 1 -0.1797 -4.3467 -1.7884 30 1 -0.4993 -3.1520 -3.0653 31 1 2.1214 -2.6989 -2.7309 32 1 1.4980 -3.9513 -3.8321 33 1 3.6905 -4.8425 -3.5453 34 1 6.4054 -6.1353 -4.2135 35 1 5.9776 -5.7595 -2.5148 36 1 7.9942 -7.5713 -3.2544 37 1 7.1149 -7.6429 -1.6914 38 1 6.4907 -9.1378 -4.2999 39 1 6.5814 -9.7982 -2.6354 40 1 3.4470 -5.0206 -0.2603 41 1 3.6391 -3.4254 -1.0227 42 1 1.0472 -4.3157 0.3317 43 1 2.3310 -3.4265 1.1848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052184463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:28 Heat of formation + Delta-G solvation = -83.001123 kcal Electronic energy + Delta-G solvation = -23266.616053 eV Core-core repulsion = 19925.349645 eV Total energy + Delta-G solvation = -3341.266408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.52755 -40.04109 -38.78858 -36.37283 -34.24701 -33.34901 -33.09916 -31.97906 -30.23731 -27.84700 -25.84054 -25.26275 -24.14340 -22.66258 -21.57505 -21.51523 -20.85600 -18.65027 -18.47563 -17.65464 -17.28802 -16.97964 -16.34122 -16.02904 -15.84263 -15.40813 -15.25625 -15.19527 -14.60022 -14.52982 -14.27705 -14.12655 -13.61900 -13.17333 -13.02647 -12.76563 -12.67480 -12.65177 -12.42830 -12.21312 -12.09079 -12.05421 -11.85687 -11.74890 -11.53699 -11.50080 -11.35119 -11.09725 -10.49324 -10.39329 -10.09156 -8.64827 -7.83079 -5.29880 1.49363 1.50191 1.57539 1.59113 1.96282 2.54014 3.05313 3.30542 3.49630 3.66093 3.70740 3.79540 3.88973 4.05787 4.11156 4.28374 4.32106 4.41812 4.43775 4.44839 4.67216 4.73170 4.76702 4.78895 4.91546 4.96363 4.98950 5.00576 5.11684 5.14346 5.14577 5.23962 5.32244 5.48493 5.54801 5.59400 5.69402 5.81763 5.82840 6.42767 6.60452 7.20769 7.27383 7.95764 8.36088 9.22135 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028126 B = 0.003961 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.286611 B = 7067.086012 C = 7548.554751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.046 4.046 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.280 1.280 7 C -0.265 4.265 8 H 0.065 0.935 9 N -0.601 5.601 10 C 0.187 3.813 11 C -0.131 4.131 12 C -0.099 4.099 13 C 0.169 3.831 14 H 0.054 0.946 15 N -0.710 5.710 16 C 0.504 3.496 17 O -0.579 6.579 18 C 0.061 3.939 19 H 0.123 0.877 20 C -0.144 4.144 21 C -0.152 4.152 22 C 0.037 3.963 23 O -0.389 6.389 24 C -0.133 4.133 25 C 0.159 3.841 26 H 0.249 0.751 27 H -0.010 1.010 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.414 0.586 34 H 0.122 0.878 35 H 0.071 0.929 36 H 0.114 0.886 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.099 0.901 40 H 0.048 0.952 41 H 0.059 0.941 42 H 0.032 0.968 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.398 -12.559 -12.904 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.206 1.206 7 C -0.396 4.396 8 H 0.082 0.918 9 N -0.323 5.323 10 C 0.063 3.937 11 C -0.170 4.170 12 C -0.137 4.137 13 C 0.065 3.935 14 H 0.072 0.928 15 N -0.363 5.363 16 C 0.291 3.709 17 O -0.458 6.458 18 C 0.000 4.000 19 H 0.141 0.859 20 C -0.182 4.182 21 C -0.189 4.189 22 C -0.038 4.038 23 O -0.308 6.308 24 C -0.175 4.175 25 C 0.031 3.969 26 H 0.058 0.942 27 H 0.008 0.992 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.251 0.749 34 H 0.141 0.859 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.107 0.893 39 H 0.117 0.883 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.741 -13.036 -12.169 21.917 hybrid contribution 0.178 1.325 0.310 1.373 sum 12.919 -11.711 -11.859 21.087 Atomic orbital electron populations 1.70238 1.06600 1.25752 1.55607 1.25754 0.95967 1.01314 1.01147 0.85386 0.77556 0.79431 0.78314 1.20029 1.22241 1.20563 1.19457 0.92550 0.86035 1.41518 0.91760 1.43842 1.32426 1.02067 1.53958 1.20810 0.86915 0.96207 0.89812 1.21809 0.97156 0.98996 0.99051 1.21077 0.95840 0.98129 0.98686 1.19719 0.89333 0.94120 0.90339 0.92777 1.46163 1.42137 1.12906 1.35121 1.21205 0.83093 0.81883 0.84750 1.90691 1.56814 1.64556 1.33733 1.22814 0.95305 0.83534 0.98307 0.85947 1.23014 0.91641 0.98749 1.04756 1.23161 1.00303 0.93606 1.01866 1.23898 0.79068 0.98568 1.02309 1.88979 1.28533 1.25786 1.87510 1.21585 0.99547 0.99183 0.97137 1.20645 0.94522 0.87417 0.94315 0.94210 0.99230 0.93404 0.93133 0.90248 0.91713 0.89544 0.74877 0.85947 0.91031 0.86804 0.91881 0.89348 0.88281 0.93331 0.92264 0.94935 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.88 11.01 21.65 0.24 -54.64 16 2 C -0.05 -2.56 4.87 84.86 0.41 -2.14 16 3 Si 0.96 44.16 29.58 68.60 2.03 46.19 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 7 C -0.27 -14.34 9.44 84.03 0.79 -13.54 16 8 H 0.06 3.40 7.88 -2.91 -0.02 3.38 16 9 N -0.60 -29.79 2.27 -698.36 -1.58 -31.37 16 10 C 0.19 8.95 4.66 86.49 0.40 9.36 16 11 C -0.13 -4.71 5.71 30.16 0.17 -4.54 16 12 C -0.10 -3.11 4.95 29.69 0.15 -2.96 16 13 C 0.17 5.50 1.94 43.01 0.08 5.58 16 14 H 0.05 2.02 6.74 -2.38 -0.02 2.01 16 15 N -0.71 -18.05 4.89 -452.05 -2.21 -20.26 16 16 C 0.50 14.66 6.73 87.66 0.59 15.25 16 17 O -0.58 -23.34 15.84 15.68 0.25 -23.09 16 18 C 0.06 1.25 3.84 30.22 0.12 1.36 16 19 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 20 C -0.14 -2.00 6.61 31.58 0.21 -1.79 16 21 C -0.15 -1.96 7.15 31.89 0.23 -1.74 16 22 C 0.04 0.56 7.72 72.67 0.56 1.12 16 23 O -0.39 -9.91 10.73 -130.26 -1.40 -11.31 16 24 C -0.13 -4.93 5.18 29.40 0.15 -4.78 16 25 C 0.16 6.96 5.65 87.38 0.49 7.46 16 26 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 27 H -0.01 -0.56 8.03 -2.38 -0.02 -0.58 16 28 H 0.05 2.53 6.33 -2.39 -0.02 2.51 16 29 H 0.05 1.80 7.32 -2.39 -0.02 1.79 16 30 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.06 2.31 7.47 -2.39 -0.02 2.29 16 32 H 0.09 2.12 8.05 -2.39 -0.02 2.10 16 33 H 0.41 7.42 8.59 -92.71 -0.80 6.63 16 34 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 1.22 7.69 -2.39 -0.02 1.20 16 36 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.05 1.84 7.68 -2.39 -0.02 1.82 16 41 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 43 H 0.04 1.68 7.99 -2.38 -0.02 1.66 16 Total: -1.00 -73.05 335.39 1.88 -71.17 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: 0.20 Total: 14.68 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 4.36 Total: 8.63 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -3.55 Total: -106.27 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -1.15 Total: -34.40 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -73.05 1.88 -71.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052184463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.834 kcal (2) G-P(sol) polarization free energy of solvation -73.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds