Wall clock time and date at job start Tue Mar 31 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99610 * 2 1 4 4 H 1.48494 * 109.47106 * 275.56672 * 3 2 1 5 5 H 1.48494 * 109.47459 * 35.57169 * 3 2 1 6 6 H 1.48504 * 109.47054 * 155.56847 * 3 2 1 7 7 C 1.38804 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00102 * 336.35513 * 7 2 1 9 9 N 1.36942 * 120.00573 * 156.35486 * 7 2 1 10 10 C 1.43338 * 120.65830 * 320.27990 * 9 7 2 11 11 C 1.54902 * 116.13852 * 271.76821 * 10 9 7 12 12 C 1.54840 * 110.03134 * 318.41853 * 11 10 9 13 13 C 1.50126 * 110.81701 * 321.19994 * 12 11 10 14 14 H 1.08994 * 110.24767 * 338.71126 * 13 12 11 15 15 N 1.46499 * 110.25111 * 216.80112 * 13 12 11 16 16 C 1.34769 * 120.00508 * 154.99876 * 15 13 12 17 17 O 1.21287 * 119.99747 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00659 * 179.97438 * 16 15 13 19 19 H 1.09001 * 110.45592 * 302.60766 * 18 16 15 20 20 C 1.54503 * 110.51512 * 179.97438 * 18 16 15 21 21 C 1.54476 * 104.06446 * 241.35768 * 20 18 16 22 22 O 1.44419 * 104.80478 * 23.97670 * 21 20 18 23 23 C 1.44424 * 105.27568 * 319.49088 * 22 21 20 24 24 C 1.52525 * 105.41418 * 97.68545 * 13 12 11 25 25 C 1.46240 * 114.27829 * 270.59273 * 24 13 12 26 26 H 0.97003 * 120.00665 * 0.02562 * 1 2 3 27 27 H 1.09008 * 108.24568 * 149.94642 * 10 9 7 28 28 H 1.08992 * 108.01232 * 33.41300 * 10 9 7 29 29 H 1.08997 * 109.36060 * 198.28009 * 11 10 9 30 30 H 1.08999 * 109.35549 * 78.55657 * 11 10 9 31 31 H 1.09001 * 109.20949 * 81.54409 * 12 11 10 32 32 H 1.09000 * 109.21019 * 200.85557 * 12 11 10 33 33 H 0.97003 * 119.99872 * 335.00034 * 15 13 12 34 34 H 1.08997 * 110.51296 * 0.02562 * 20 18 16 35 35 H 1.09004 * 110.51178 * 122.70936 * 20 18 16 36 36 H 1.09001 * 110.37197 * 142.81287 * 21 20 18 37 37 H 1.09007 * 110.37594 * 265.14691 * 21 20 18 38 38 H 1.09000 * 110.37289 * 281.67397 * 23 22 21 39 39 H 1.09003 * 110.37234 * 159.34414 * 23 22 21 40 40 H 1.09001 * 108.52380 * 31.83268 * 24 13 12 41 41 H 1.08993 * 108.52095 * 149.50603 * 24 13 12 42 42 H 1.08997 * 109.84714 * 177.91403 * 25 24 13 43 43 H 1.09004 * 109.84536 * 298.83733 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3799 2.1144 -1.3934 5 1 1.5114 2.6159 0.8144 6 1 3.6015 1.4092 0.5791 7 6 2.0103 -1.2020 0.0005 8 1 1.5384 -2.0980 0.3761 9 7 3.2935 -1.2521 -0.4751 10 6 3.6702 -0.5087 -1.6413 11 6 3.4705 -1.2242 -3.0006 12 6 3.9082 -2.7052 -2.8898 13 6 5.1384 -2.8358 -2.0392 14 1 5.6689 -1.8848 -1.9948 15 7 6.0157 -3.8803 -2.5735 16 6 7.3385 -3.8452 -2.3179 17 8 7.8027 -2.9484 -1.6460 18 6 8.2410 -4.9199 -2.8670 19 1 7.9108 -5.9029 -2.5312 20 6 9.7050 -4.6661 -2.4436 21 6 10.4558 -4.4803 -3.7808 22 8 9.4417 -4.0558 -4.7174 23 6 8.2804 -4.8574 -4.4100 24 6 4.6336 -3.2241 -0.6532 25 6 4.3316 -2.0880 0.2167 26 1 -0.4851 0.8400 -0.0004 27 1 4.7229 -0.2408 -1.5499 28 1 3.0904 0.4141 -1.6546 29 1 4.0701 -0.7262 -3.7625 30 1 2.4184 -1.1784 -3.2818 31 1 3.1005 -3.2855 -2.4436 32 1 4.1187 -3.0926 -3.8866 33 1 5.6446 -4.5973 -3.1112 34 1 9.7761 -3.7635 -1.8367 35 1 10.0997 -5.5246 -1.9000 36 1 11.2247 -3.7143 -3.6809 37 1 10.8980 -5.4234 -4.1020 38 1 8.3888 -5.8584 -4.8278 39 1 7.3781 -4.3811 -4.7937 40 1 3.7294 -3.8217 -0.7688 41 1 5.3927 -3.8371 -0.1675 42 1 3.9435 -2.4453 1.1706 43 1 5.2333 -1.4982 0.3817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052242120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:31 Heat of formation + Delta-G solvation = -54.866787 kcal Electronic energy + Delta-G solvation = -23394.483456 eV Core-core repulsion = 20054.437043 eV Total energy + Delta-G solvation = -3340.046412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.59354 -38.98987 -37.66310 -34.84740 -32.77375 -32.16195 -31.86390 -30.73196 -29.33466 -26.29939 -24.58768 -23.63299 -23.21128 -22.19437 -20.24737 -20.03232 -19.51372 -17.48848 -16.74713 -16.50751 -16.27434 -15.96389 -15.32955 -14.82589 -14.59525 -14.54622 -14.06354 -13.89572 -13.42097 -13.05219 -12.83606 -12.56735 -12.24396 -12.08760 -11.81713 -11.73324 -11.72086 -11.56360 -11.20527 -11.07574 -10.73207 -10.52236 -10.50200 -10.24163 -10.08546 -9.94607 -9.66371 -9.64390 -9.43517 -8.86196 -8.42950 -6.72724 -5.99591 -3.41742 2.61959 3.16803 3.35855 3.50004 3.58418 3.68017 4.14417 4.50123 4.56014 4.61892 4.81915 4.88356 4.93838 5.11012 5.20460 5.23667 5.30584 5.33799 5.38076 5.45110 5.54571 5.58269 5.89314 5.92192 5.92775 5.94136 6.20177 6.27783 6.33103 6.44809 6.48447 6.53815 6.68659 6.77378 6.78984 6.88009 6.91213 7.00270 7.57477 8.10770 8.27676 8.37694 9.03772 9.73544 10.19608 11.15880 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035079 B = 0.003970 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.014280 B = 7050.677720 C = 7075.478653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.041 3.959 3 Si 0.876 3.124 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.267 4.267 8 H 0.075 0.925 9 N -0.600 5.600 10 C 0.145 3.855 11 C -0.137 4.137 12 C -0.113 4.113 13 C 0.147 3.853 14 H 0.094 0.906 15 N -0.721 5.721 16 C 0.520 3.480 17 O -0.532 6.532 18 C -0.148 4.148 19 H 0.110 0.890 20 C -0.147 4.147 21 C 0.045 3.955 22 O -0.371 6.371 23 C 0.056 3.944 24 C -0.136 4.136 25 C 0.138 3.862 26 H 0.263 0.737 27 H 0.030 0.970 28 H 0.042 0.958 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.048 0.952 33 H 0.395 0.605 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.636 -12.599 -8.497 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.160 4.160 3 Si 0.706 3.294 4 H -0.213 1.213 5 H -0.229 1.229 6 H -0.194 1.194 7 C -0.396 4.396 8 H 0.092 0.908 9 N -0.323 5.323 10 C 0.017 3.983 11 C -0.178 4.178 12 C -0.151 4.151 13 C 0.044 3.956 14 H 0.112 0.888 15 N -0.372 5.372 16 C 0.305 3.695 17 O -0.408 6.408 18 C -0.170 4.170 19 H 0.128 0.872 20 C -0.185 4.185 21 C -0.031 4.031 22 O -0.289 6.289 23 C -0.022 4.022 24 C -0.176 4.176 25 C 0.014 3.986 26 H 0.073 0.927 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.229 0.771 34 H 0.120 0.880 35 H 0.099 0.901 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 16.811 -11.678 -8.118 22.020 hybrid contribution 0.052 0.318 -0.132 0.348 sum 16.863 -11.361 -8.250 21.943 Atomic orbital electron populations 1.69890 1.06087 1.26781 1.51102 1.25516 0.94993 0.97831 0.97695 0.86922 0.80825 0.84650 0.77048 1.21346 1.22934 1.19393 1.18695 0.86909 0.94207 1.39772 0.90775 1.44168 1.07681 1.55785 1.24633 1.20671 0.97028 0.94178 0.86374 1.22744 1.01089 0.94450 0.99519 1.21695 0.96480 0.98986 0.97951 1.20391 0.90345 0.90895 0.93960 0.88772 1.46225 1.07149 1.29438 1.54354 1.20203 0.82649 0.86428 0.80199 1.90690 1.74917 1.36288 1.38903 1.22742 0.96857 0.99683 0.97687 0.87200 1.23002 0.91911 1.04759 0.98855 1.23458 0.91850 1.00173 0.87649 1.89172 1.22473 1.60957 1.56309 1.23397 0.90603 0.96383 0.91768 1.21298 1.00097 1.00470 0.95731 1.20380 0.91868 0.91524 0.94831 0.92729 0.95208 0.94001 0.93131 0.91676 0.90720 0.93319 0.77103 0.88012 0.90081 0.88834 0.92224 0.91152 0.88668 0.91706 0.93581 0.91343 0.94819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.97 55.49 0.78 -26.46 16 2 C 0.04 1.17 5.28 -17.43 -0.09 1.08 16 3 Si 0.88 22.57 25.26 -169.99 -4.29 18.28 16 4 H -0.29 -7.19 6.74 56.52 0.38 -6.81 16 5 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 6 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.27 -7.39 9.92 -15.06 -0.15 -7.54 16 8 H 0.07 2.20 8.06 -52.48 -0.42 1.78 16 9 N -0.60 -14.17 2.14 -175.15 -0.37 -14.55 16 10 C 0.15 3.21 4.22 -4.71 -0.02 3.19 16 11 C -0.14 -2.54 6.42 -24.76 -0.16 -2.70 16 12 C -0.11 -1.79 5.30 -27.19 -0.14 -1.94 16 13 C 0.15 2.34 2.23 -69.60 -0.16 2.19 16 14 H 0.09 1.76 5.69 -51.93 -0.30 1.46 16 15 N -0.72 -8.95 4.77 -55.45 -0.26 -9.21 16 16 C 0.52 6.96 7.07 -10.99 -0.08 6.88 16 17 O -0.53 -9.45 14.93 5.55 0.08 -9.37 16 18 C -0.15 -1.37 3.51 -90.21 -0.32 -1.68 16 19 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.15 -1.35 6.67 -25.17 -0.17 -1.52 16 21 C 0.05 0.39 7.63 37.93 0.29 0.68 16 22 O -0.37 -4.26 11.65 -35.23 -0.41 -4.67 16 23 C 0.06 0.48 7.17 37.93 0.27 0.75 16 24 C -0.14 -2.33 4.92 -30.19 -0.15 -2.48 16 25 C 0.14 2.80 6.11 -5.20 -0.03 2.77 16 26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 27 H 0.03 0.63 6.88 -51.92 -0.36 0.27 16 28 H 0.04 1.02 3.39 -51.93 -0.18 0.85 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.07 1.29 6.83 -51.93 -0.35 0.93 16 32 H 0.05 0.64 7.85 -51.93 -0.41 0.23 16 33 H 0.40 3.62 8.52 -40.82 -0.35 3.27 16 34 H 0.10 1.21 6.50 -51.93 -0.34 0.88 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.81 7.72 -51.93 -0.40 0.41 16 40 H 0.06 1.14 6.93 -51.93 -0.36 0.78 16 41 H 0.05 0.75 8.02 -51.93 -0.42 0.33 16 42 H 0.07 1.38 7.99 -51.93 -0.42 0.97 16 43 H 0.03 0.69 8.12 -51.93 -0.42 0.27 16 LS Contribution 327.92 15.07 4.94 4.94 Total: -1.00 -33.19 327.92 -7.27 -40.47 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -6.83 Total: 0.89 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -0.90 Total: -0.32 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.14 Total: -50.22 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: -0.33 Total: -14.04 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.29 Total: 18.28 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.19 -7.27 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052242120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.399 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds