Wall clock time and date at job start Tue Mar 31 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99610 * 2 1 4 4 H 1.48494 * 109.47106 * 275.56672 * 3 2 1 5 5 H 1.48494 * 109.47459 * 35.57169 * 3 2 1 6 6 H 1.48504 * 109.47054 * 155.56847 * 3 2 1 7 7 C 1.38804 * 120.00425 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00102 * 336.35513 * 7 2 1 9 9 N 1.36942 * 120.00573 * 156.35486 * 7 2 1 10 10 C 1.43338 * 120.65830 * 320.27990 * 9 7 2 11 11 C 1.54902 * 116.13852 * 271.76821 * 10 9 7 12 12 C 1.54840 * 110.03134 * 318.41853 * 11 10 9 13 13 C 1.50126 * 110.81701 * 321.19994 * 12 11 10 14 14 H 1.08994 * 110.24767 * 338.71126 * 13 12 11 15 15 N 1.46499 * 110.25111 * 216.80112 * 13 12 11 16 16 C 1.34769 * 120.00508 * 154.99876 * 15 13 12 17 17 O 1.21287 * 119.99747 * 359.97438 * 16 15 13 18 18 C 1.50698 * 120.00659 * 179.97438 * 16 15 13 19 19 H 1.09001 * 110.45592 * 302.60766 * 18 16 15 20 20 C 1.54503 * 110.51512 * 179.97438 * 18 16 15 21 21 C 1.54476 * 104.06446 * 241.35768 * 20 18 16 22 22 O 1.44419 * 104.80478 * 23.97670 * 21 20 18 23 23 C 1.44424 * 105.27568 * 319.49088 * 22 21 20 24 24 C 1.52525 * 105.41418 * 97.68545 * 13 12 11 25 25 C 1.46240 * 114.27829 * 270.59273 * 24 13 12 26 26 H 0.97003 * 120.00665 * 0.02562 * 1 2 3 27 27 H 1.09008 * 108.24568 * 149.94642 * 10 9 7 28 28 H 1.08992 * 108.01232 * 33.41300 * 10 9 7 29 29 H 1.08997 * 109.36060 * 198.28009 * 11 10 9 30 30 H 1.08999 * 109.35549 * 78.55657 * 11 10 9 31 31 H 1.09001 * 109.20949 * 81.54409 * 12 11 10 32 32 H 1.09000 * 109.21019 * 200.85557 * 12 11 10 33 33 H 0.97003 * 119.99872 * 335.00034 * 15 13 12 34 34 H 1.08997 * 110.51296 * 0.02562 * 20 18 16 35 35 H 1.09004 * 110.51178 * 122.70936 * 20 18 16 36 36 H 1.09001 * 110.37197 * 142.81287 * 21 20 18 37 37 H 1.09007 * 110.37594 * 265.14691 * 21 20 18 38 38 H 1.09000 * 110.37289 * 281.67397 * 23 22 21 39 39 H 1.09003 * 110.37234 * 159.34414 * 23 22 21 40 40 H 1.09001 * 108.52380 * 31.83268 * 24 13 12 41 41 H 1.08993 * 108.52095 * 149.50603 * 24 13 12 42 42 H 1.08997 * 109.84714 * 177.91403 * 25 24 13 43 43 H 1.09004 * 109.84536 * 298.83733 * 25 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3799 2.1144 -1.3934 5 1 1.5114 2.6159 0.8144 6 1 3.6015 1.4092 0.5791 7 6 2.0103 -1.2020 0.0005 8 1 1.5384 -2.0980 0.3761 9 7 3.2935 -1.2521 -0.4751 10 6 3.6702 -0.5087 -1.6413 11 6 3.4705 -1.2242 -3.0006 12 6 3.9082 -2.7052 -2.8898 13 6 5.1384 -2.8358 -2.0392 14 1 5.6689 -1.8848 -1.9948 15 7 6.0157 -3.8803 -2.5735 16 6 7.3385 -3.8452 -2.3179 17 8 7.8027 -2.9484 -1.6460 18 6 8.2410 -4.9199 -2.8670 19 1 7.9108 -5.9029 -2.5312 20 6 9.7050 -4.6661 -2.4436 21 6 10.4558 -4.4803 -3.7808 22 8 9.4417 -4.0558 -4.7174 23 6 8.2804 -4.8574 -4.4100 24 6 4.6336 -3.2241 -0.6532 25 6 4.3316 -2.0880 0.2167 26 1 -0.4851 0.8400 -0.0004 27 1 4.7229 -0.2408 -1.5499 28 1 3.0904 0.4141 -1.6546 29 1 4.0701 -0.7262 -3.7625 30 1 2.4184 -1.1784 -3.2818 31 1 3.1005 -3.2855 -2.4436 32 1 4.1187 -3.0926 -3.8866 33 1 5.6446 -4.5973 -3.1112 34 1 9.7761 -3.7635 -1.8367 35 1 10.0997 -5.5246 -1.9000 36 1 11.2247 -3.7143 -3.6809 37 1 10.8980 -5.4234 -4.1020 38 1 8.3888 -5.8584 -4.8278 39 1 7.3781 -4.3811 -4.7937 40 1 3.7294 -3.8217 -0.7688 41 1 5.3927 -3.8371 -0.1675 42 1 3.9435 -2.4453 1.1706 43 1 5.2333 -1.4982 0.3817 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052242120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:31 Heat of formation + Delta-G solvation = -78.989551 kcal Electronic energy + Delta-G solvation = -23395.529497 eV Core-core repulsion = 20054.437043 eV Total energy + Delta-G solvation = -3341.092454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56767 -40.11933 -38.91753 -36.36918 -34.27737 -33.45425 -33.30599 -32.25517 -30.10407 -28.02889 -25.95454 -25.14048 -24.40994 -23.04415 -21.68565 -21.41813 -20.77414 -18.56774 -18.26110 -17.83101 -17.34743 -17.07052 -16.53539 -16.26857 -15.88782 -15.73489 -15.56548 -15.01243 -14.89731 -14.75644 -14.34790 -13.91336 -13.61634 -13.54838 -13.22690 -12.95573 -12.74494 -12.53435 -12.42894 -12.31166 -12.29818 -12.00977 -11.92695 -11.86437 -11.61840 -11.40015 -11.25947 -11.01063 -10.56706 -10.55818 -10.04606 -8.70462 -8.22420 -5.60744 1.28498 1.38380 1.50252 1.62176 2.15666 2.40827 3.01806 3.04409 3.27887 3.43936 3.74542 3.80599 3.94745 3.98909 4.13685 4.20267 4.30475 4.37241 4.39124 4.44899 4.50063 4.66230 4.68055 4.73577 4.81422 4.84288 4.89751 4.93631 4.99509 5.03520 5.09305 5.17880 5.22768 5.30367 5.42044 5.45011 5.62957 5.83007 5.95711 6.16610 6.60377 6.99652 7.29740 7.61698 8.10505 8.97138 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035079 B = 0.003970 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.014280 B = 7050.677720 C = 7075.478653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.008 4.008 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.305 1.305 6 H -0.270 1.270 7 C -0.253 4.253 8 H 0.044 0.956 9 N -0.609 5.609 10 C 0.139 3.861 11 C -0.133 4.133 12 C -0.104 4.104 13 C 0.158 3.842 14 H 0.069 0.931 15 N -0.708 5.708 16 C 0.514 3.486 17 O -0.582 6.582 18 C -0.140 4.140 19 H 0.147 0.853 20 C -0.149 4.149 21 C 0.043 3.957 22 O -0.405 6.405 23 C 0.054 3.946 24 C -0.128 4.128 25 C 0.139 3.861 26 H 0.263 0.737 27 H 0.039 0.961 28 H 0.018 0.982 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.605 -14.544 -10.145 25.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.206 4.206 3 Si 0.763 3.237 4 H -0.204 1.204 5 H -0.233 1.233 6 H -0.194 1.194 7 C -0.383 4.383 8 H 0.062 0.938 9 N -0.333 5.333 10 C 0.012 3.988 11 C -0.174 4.174 12 C -0.142 4.142 13 C 0.053 3.947 14 H 0.087 0.913 15 N -0.359 5.359 16 C 0.302 3.698 17 O -0.461 6.461 18 C -0.161 4.161 19 H 0.164 0.836 20 C -0.187 4.187 21 C -0.033 4.033 22 O -0.325 6.325 23 C -0.022 4.022 24 C -0.167 4.167 25 C 0.015 3.985 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.036 0.964 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.253 0.747 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 18.805 -13.663 -9.802 25.227 hybrid contribution -0.507 0.861 0.398 1.075 sum 18.298 -12.802 -9.404 24.231 Atomic orbital electron populations 1.69985 1.07437 1.27405 1.53657 1.26016 0.95473 1.00610 0.98484 0.85982 0.79263 0.81181 0.77277 1.20368 1.23321 1.19444 1.18593 0.88356 0.93020 1.38314 0.93794 1.44254 1.06971 1.56399 1.25718 1.20761 0.96902 0.93597 0.87572 1.22653 1.00715 0.96341 0.97723 1.21574 0.95833 0.96852 0.99906 1.20009 0.90443 0.90959 0.93297 0.91285 1.46007 1.06700 1.29090 1.54117 1.21014 0.82931 0.86634 0.79220 1.90681 1.75779 1.38496 1.41184 1.22816 0.95638 0.99486 0.98182 0.83563 1.23008 0.92381 1.04304 0.98981 1.23602 0.91331 1.01397 0.86950 1.89135 1.23867 1.62321 1.57149 1.23601 0.89824 0.97791 0.91021 1.21128 1.00380 0.98988 0.96245 1.20465 0.90691 0.92051 0.95268 0.92755 0.94313 0.96410 0.90625 0.93312 0.92052 0.89713 0.74744 0.91394 0.87394 0.89238 0.89393 0.87708 0.88783 0.91932 0.92351 0.91866 0.94857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.52 13.97 21.65 0.30 -58.22 16 2 C -0.01 -0.50 5.28 84.86 0.45 -0.05 16 3 Si 0.93 47.52 25.26 68.60 1.73 49.26 16 4 H -0.28 -13.53 6.74 99.48 0.67 -12.86 16 5 H -0.30 -15.55 7.11 99.48 0.71 -14.84 16 6 H -0.27 -13.57 7.11 99.48 0.71 -12.86 16 7 C -0.25 -14.28 9.92 84.03 0.83 -13.45 16 8 H 0.04 2.71 8.06 -2.91 -0.02 2.69 16 9 N -0.61 -28.89 2.14 -708.06 -1.51 -30.40 16 10 C 0.14 6.05 4.22 87.61 0.37 6.42 16 11 C -0.13 -4.77 6.42 31.87 0.20 -4.56 16 12 C -0.10 -3.05 5.30 30.30 0.16 -2.89 16 13 C 0.16 4.71 2.23 43.91 0.10 4.81 16 14 H 0.07 2.49 5.69 -2.39 -0.01 2.47 16 15 N -0.71 -15.49 4.77 -447.73 -2.14 -17.63 16 16 C 0.51 12.63 7.07 87.66 0.62 13.25 16 17 O -0.58 -20.33 14.93 -3.05 -0.05 -20.37 16 18 C -0.14 -2.09 3.51 -10.53 -0.04 -2.13 16 19 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 20 C -0.15 -2.38 6.67 31.61 0.21 -2.17 16 21 C 0.04 0.65 7.63 72.48 0.55 1.20 16 22 O -0.41 -8.37 11.65 -148.98 -1.74 -10.10 16 23 C 0.05 0.73 7.17 72.49 0.52 1.25 16 24 C -0.13 -4.22 4.92 28.36 0.14 -4.08 16 25 C 0.14 5.60 6.11 83.58 0.51 6.11 16 26 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 27 H 0.04 1.61 6.88 -2.38 -0.02 1.59 16 28 H 0.02 0.86 3.39 -2.39 -0.01 0.86 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 2.00 6.83 -2.39 -0.02 1.99 16 32 H 0.08 1.90 7.85 -2.39 -0.02 1.88 16 33 H 0.42 5.90 8.52 -92.71 -0.79 5.11 16 34 H 0.07 1.59 6.50 -2.39 -0.02 1.57 16 35 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 1.26 7.72 -2.39 -0.02 1.24 16 40 H 0.06 2.12 6.93 -2.39 -0.02 2.10 16 41 H 0.06 1.79 8.02 -2.39 -0.02 1.78 16 42 H 0.06 2.57 7.99 -2.39 -0.02 2.55 16 43 H 0.03 1.35 8.12 -2.39 -0.02 1.33 16 Total: -1.00 -74.59 327.92 1.42 -73.17 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.18 Total: 10.59 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: 4.63 Total: 3.71 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -3.35 Total: -106.25 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.78 Total: -30.47 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 1.73 Total: 49.26 kcal Total: -74.59 1.42 -73.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052242120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.820 kcal (2) G-P(sol) polarization free energy of solvation -74.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds