Wall clock time and date at job start Tue Mar 31 2020 06:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00115 * 2 1 4 4 H 1.48500 * 109.46820 * 239.99976 * 3 2 1 5 5 H 1.48499 * 109.47006 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46960 * 120.00079 * 3 2 1 7 7 C 1.38810 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99926 * 195.64662 * 7 2 1 9 9 N 1.36936 * 120.00329 * 15.64601 * 7 2 1 10 10 C 1.44579 * 118.64730 * 206.47308 * 9 7 2 11 11 C 1.54861 * 109.60025 * 270.72601 * 10 9 7 12 12 C 1.47095 * 110.32372 * 288.73011 * 11 10 9 13 13 C 1.52574 * 114.32282 * 62.80072 * 12 11 10 14 14 H 1.09004 * 109.49155 * 34.98060 * 13 12 11 15 15 N 1.46501 * 109.48362 * 155.02043 * 13 12 11 16 16 C 1.34788 * 119.99553 * 204.95135 * 15 13 12 17 17 O 1.21276 * 119.99892 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.99621 * 180.28041 * 16 15 13 19 19 H 1.08998 * 110.45621 * 57.12392 * 18 16 15 20 20 C 1.54501 * 110.50900 * 179.72668 * 18 16 15 21 21 C 1.54482 * 104.06396 * 118.64626 * 20 18 16 22 22 O 1.44427 * 104.80375 * 23.97536 * 21 20 18 23 23 C 1.44425 * 105.27445 * 319.48988 * 22 21 20 24 24 C 1.50878 * 109.38024 * 274.99895 * 13 12 11 25 25 C 1.47604 * 118.64305 * 26.49192 * 9 7 2 26 26 H 0.97000 * 120.00030 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.45290 * 150.68668 * 10 9 7 28 28 H 1.09006 * 109.44576 * 30.76294 * 10 9 7 29 29 H 1.09000 * 109.33071 * 168.47019 * 11 10 9 30 30 H 1.08996 * 109.33052 * 48.99136 * 11 10 9 31 31 H 1.09001 * 108.51237 * 301.55444 * 12 11 10 32 32 H 1.08994 * 108.39062 * 183.96651 * 12 11 10 33 33 H 0.96996 * 120.00617 * 24.96448 * 15 13 12 34 34 H 1.09005 * 110.51544 * 237.28715 * 20 18 16 35 35 H 1.09000 * 110.51189 * 359.86661 * 20 18 16 36 36 H 1.09000 * 110.37813 * 142.81443 * 21 20 18 37 37 H 1.09003 * 110.37015 * 265.14549 * 21 20 18 38 38 H 1.08999 * 110.37657 * 281.68203 * 23 22 21 39 39 H 1.08997 * 110.37296 * 159.33809 * 23 22 21 40 40 H 1.08998 * 109.36780 * 212.06862 * 24 13 12 41 41 H 1.09003 * 109.36629 * 331.68792 * 24 13 12 42 42 H 1.08997 * 108.95181 * 258.55466 * 25 9 7 43 43 H 1.09002 * 108.94629 * 17.27458 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0602 -1.2194 0.2528 9 7 1.3636 -2.3662 -0.3188 10 6 1.8696 -3.6098 0.2177 11 6 2.9226 -4.2030 -0.7505 12 6 2.2698 -4.7081 -1.9681 13 6 1.5608 -3.6369 -2.7914 14 1 2.1204 -2.7033 -2.7328 15 7 1.4776 -4.0699 -4.1885 16 6 1.3719 -3.1547 -5.1724 17 8 1.3461 -1.9730 -4.9012 18 6 1.2799 -3.6003 -6.6091 19 1 0.4325 -4.2721 -6.7461 20 6 1.1599 -2.3791 -7.5480 21 6 2.4151 -2.4697 -8.4440 22 8 2.7877 -3.8648 -8.4171 23 6 2.5934 -4.2843 -7.0488 24 6 0.1700 -3.4253 -2.2462 25 6 0.1790 -2.2997 -1.1968 26 1 -0.4850 0.8400 -0.0004 27 1 1.0472 -4.3154 0.3361 28 1 2.3315 -3.4253 1.1877 29 1 3.4467 -5.0211 -0.2564 30 1 3.6408 -3.4290 -1.0208 31 1 1.5389 -5.4640 -1.6809 32 1 3.0272 -5.1805 -2.5936 33 1 1.4984 -5.0150 -4.4055 34 1 0.2545 -2.4484 -8.1510 35 1 1.1648 -1.4532 -6.9728 36 1 2.1780 -2.1597 -9.4617 37 1 3.2174 -1.8547 -8.0364 38 1 3.4231 -3.9476 -6.4272 39 1 2.4932 -5.3683 -6.9949 40 1 -0.5005 -3.1542 -3.0616 41 1 -0.1811 -4.3477 -1.7835 42 1 -0.7198 -2.3790 -0.5853 43 1 0.1732 -1.3386 -1.7111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052242121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:34 Heat of formation + Delta-G solvation = -64.024452 kcal Electronic energy + Delta-G solvation = -23540.446026 eV Core-core repulsion = 20200.002507 eV Total energy + Delta-G solvation = -3340.443518 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.40277 -38.79948 -37.45209 -34.68955 -32.92877 -32.34160 -30.94349 -30.45777 -29.17477 -26.01341 -24.31561 -23.46322 -23.18015 -22.08098 -20.25811 -19.62411 -19.21217 -17.48180 -16.74732 -16.50874 -15.87478 -15.50808 -15.22581 -14.96674 -14.49296 -14.13703 -13.86603 -13.44488 -13.23612 -13.07067 -12.85314 -12.42786 -12.24977 -11.91216 -11.73434 -11.49437 -11.48531 -11.06054 -10.91426 -10.84861 -10.72737 -10.38894 -10.20436 -10.06666 -10.02665 -9.92660 -9.68559 -9.56875 -9.47847 -8.73864 -8.30336 -6.60622 -5.70827 -3.14676 2.80122 3.30205 3.44509 3.50335 3.52839 3.81600 4.29425 4.57594 4.62139 4.74643 4.94353 5.07868 5.13640 5.21214 5.30547 5.41913 5.50713 5.55952 5.56044 5.60053 5.75160 5.82357 5.96184 6.00956 6.11591 6.21418 6.30588 6.45057 6.50153 6.53434 6.60453 6.69491 6.77877 6.86610 7.01360 7.07669 7.49015 7.73933 7.78091 7.90100 8.46126 8.54878 9.31196 9.98271 10.42517 11.36795 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017820 B = 0.005131 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.877374 B = 5456.210277 C = 6321.963141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.260 4.260 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.157 3.843 11 C -0.146 4.146 12 C -0.106 4.106 13 C 0.153 3.847 14 H 0.103 0.897 15 N -0.726 5.726 16 C 0.513 3.487 17 O -0.521 6.521 18 C -0.146 4.146 19 H 0.107 0.893 20 C -0.148 4.148 21 C 0.045 3.955 22 O -0.375 6.375 23 C 0.058 3.942 24 C -0.146 4.146 25 C 0.183 3.817 26 H 0.253 0.747 27 H 0.032 0.968 28 H 0.046 0.954 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.391 0.609 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.045 0.955 42 H 0.025 0.975 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 -11.464 -12.692 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.729 3.271 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.390 4.390 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.028 3.972 11 C -0.187 4.187 12 C -0.144 4.144 13 C 0.050 3.950 14 H 0.121 0.879 15 N -0.377 5.377 16 C 0.298 3.702 17 O -0.397 6.397 18 C -0.168 4.168 19 H 0.125 0.875 20 C -0.186 4.186 21 C -0.032 4.032 22 O -0.294 6.294 23 C -0.019 4.019 24 C -0.186 4.186 25 C 0.057 3.943 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.224 0.776 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.453 -10.578 -12.646 16.668 hybrid contribution 0.256 0.443 0.036 0.513 sum 2.709 -10.135 -12.610 16.403 Atomic orbital electron populations 1.70043 1.05247 1.25503 1.53967 1.24999 0.95227 0.98310 1.00539 0.86419 0.79004 0.83613 0.78038 1.20994 1.21669 1.20970 1.19125 0.92315 0.85042 1.42536 0.91832 1.43660 1.32365 1.01913 1.53285 1.20692 0.93884 0.88397 0.94197 1.21453 1.00347 0.99954 0.96926 1.20565 0.99097 0.97461 0.97267 1.20558 0.97714 0.99283 0.77487 0.87940 1.46331 1.74824 1.09061 1.07441 1.20209 0.76711 0.86535 0.86750 1.90767 1.48458 1.16827 1.83603 1.22725 1.00876 0.99675 0.93483 0.87537 1.22966 0.98919 0.99464 0.97208 1.23477 0.95860 0.83089 1.00767 1.89107 1.88238 1.25318 1.26701 1.23338 0.94869 0.99925 0.83777 1.22430 0.95434 1.00875 0.99893 1.20928 0.88541 0.95646 0.89170 0.93673 0.95012 0.93578 0.93020 0.91958 0.92799 0.93446 0.77595 0.90302 0.87766 0.88873 0.91909 0.91668 0.88425 0.92705 0.93612 0.95677 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 11.01 55.49 0.61 -26.18 16 2 C 0.01 0.23 4.87 -17.43 -0.08 0.14 16 3 Si 0.90 22.51 29.58 -169.99 -5.03 17.48 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 7 C -0.26 -7.20 9.44 -15.06 -0.14 -7.34 16 8 H 0.06 1.73 7.88 -52.48 -0.41 1.32 16 9 N -0.59 -14.63 2.27 -172.12 -0.39 -15.02 16 10 C 0.16 3.19 5.66 -4.09 -0.02 3.17 16 11 C -0.15 -2.48 5.74 -28.58 -0.16 -2.64 16 12 C -0.11 -1.60 4.69 -29.78 -0.14 -1.74 16 13 C 0.15 2.67 2.06 -69.21 -0.14 2.53 16 14 H 0.10 2.30 6.92 -51.93 -0.36 1.94 16 15 N -0.73 -10.05 4.93 -55.06 -0.27 -10.32 16 16 C 0.51 7.83 6.83 -10.98 -0.07 7.75 16 17 O -0.52 -10.65 14.94 5.56 0.08 -10.57 16 18 C -0.15 -1.63 3.51 -90.20 -0.32 -1.95 16 19 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.15 -1.67 6.67 -25.17 -0.17 -1.84 16 21 C 0.04 0.47 7.63 37.94 0.29 0.76 16 22 O -0.38 -4.41 11.65 -35.23 -0.41 -4.82 16 23 C 0.06 0.59 7.17 37.94 0.27 0.86 16 24 C -0.15 -2.82 5.38 -27.33 -0.15 -2.96 16 25 C 0.18 4.47 4.66 -2.97 -0.01 4.45 16 26 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 27 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 28 H 0.05 0.96 7.99 -51.93 -0.41 0.54 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.75 7.36 -51.93 -0.38 0.37 16 32 H 0.05 0.61 8.04 -51.93 -0.42 0.20 16 33 H 0.39 3.95 8.60 -40.82 -0.35 3.60 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.44 6.50 -51.93 -0.34 1.10 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.71 7.86 -51.93 -0.41 0.30 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 1.06 7.84 -51.93 -0.41 0.66 16 41 H 0.05 0.80 7.32 -51.93 -0.38 0.42 16 42 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 43 H 0.08 2.21 6.33 -51.93 -0.33 1.88 16 LS Contribution 334.07 15.07 5.03 5.03 Total: -1.00 -32.38 334.07 -8.36 -40.74 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.13 Total: 2.46 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -0.86 Total: 1.20 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: -0.05 Total: -51.52 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.33 Total: -15.39 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.38 -8.36 -40.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052242121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.285 kcal (2) G-P(sol) polarization free energy of solvation -32.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds