Wall clock time and date at job start Tue Mar 31 2020 06:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00115 * 2 1 4 4 H 1.48500 * 109.46820 * 239.99976 * 3 2 1 5 5 H 1.48499 * 109.47006 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.46960 * 120.00079 * 3 2 1 7 7 C 1.38810 * 119.99754 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99926 * 195.64662 * 7 2 1 9 9 N 1.36936 * 120.00329 * 15.64601 * 7 2 1 10 10 C 1.44579 * 118.64730 * 206.47308 * 9 7 2 11 11 C 1.54861 * 109.60025 * 270.72601 * 10 9 7 12 12 C 1.47095 * 110.32372 * 288.73011 * 11 10 9 13 13 C 1.52574 * 114.32282 * 62.80072 * 12 11 10 14 14 H 1.09004 * 109.49155 * 34.98060 * 13 12 11 15 15 N 1.46501 * 109.48362 * 155.02043 * 13 12 11 16 16 C 1.34788 * 119.99553 * 204.95135 * 15 13 12 17 17 O 1.21276 * 119.99892 * 0.02562 * 16 15 13 18 18 C 1.50699 * 119.99621 * 180.28041 * 16 15 13 19 19 H 1.08998 * 110.45621 * 57.12392 * 18 16 15 20 20 C 1.54501 * 110.50900 * 179.72668 * 18 16 15 21 21 C 1.54482 * 104.06396 * 118.64626 * 20 18 16 22 22 O 1.44427 * 104.80375 * 23.97536 * 21 20 18 23 23 C 1.44425 * 105.27445 * 319.48988 * 22 21 20 24 24 C 1.50878 * 109.38024 * 274.99895 * 13 12 11 25 25 C 1.47604 * 118.64305 * 26.49192 * 9 7 2 26 26 H 0.97000 * 120.00030 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.45290 * 150.68668 * 10 9 7 28 28 H 1.09006 * 109.44576 * 30.76294 * 10 9 7 29 29 H 1.09000 * 109.33071 * 168.47019 * 11 10 9 30 30 H 1.08996 * 109.33052 * 48.99136 * 11 10 9 31 31 H 1.09001 * 108.51237 * 301.55444 * 12 11 10 32 32 H 1.08994 * 108.39062 * 183.96651 * 12 11 10 33 33 H 0.96996 * 120.00617 * 24.96448 * 15 13 12 34 34 H 1.09005 * 110.51544 * 237.28715 * 20 18 16 35 35 H 1.09000 * 110.51189 * 359.86661 * 20 18 16 36 36 H 1.09000 * 110.37813 * 142.81443 * 21 20 18 37 37 H 1.09003 * 110.37015 * 265.14549 * 21 20 18 38 38 H 1.08999 * 110.37657 * 281.68203 * 23 22 21 39 39 H 1.08997 * 110.37296 * 159.33809 * 23 22 21 40 40 H 1.08998 * 109.36780 * 212.06862 * 24 13 12 41 41 H 1.09003 * 109.36629 * 331.68792 * 24 13 12 42 42 H 1.08997 * 108.95181 * 258.55466 * 25 9 7 43 43 H 1.09002 * 108.94629 * 17.27458 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0602 -1.2194 0.2528 9 7 1.3636 -2.3662 -0.3188 10 6 1.8696 -3.6098 0.2177 11 6 2.9226 -4.2030 -0.7505 12 6 2.2698 -4.7081 -1.9681 13 6 1.5608 -3.6369 -2.7914 14 1 2.1204 -2.7033 -2.7328 15 7 1.4776 -4.0699 -4.1885 16 6 1.3719 -3.1547 -5.1724 17 8 1.3461 -1.9730 -4.9012 18 6 1.2799 -3.6003 -6.6091 19 1 0.4325 -4.2721 -6.7461 20 6 1.1599 -2.3791 -7.5480 21 6 2.4151 -2.4697 -8.4440 22 8 2.7877 -3.8648 -8.4171 23 6 2.5934 -4.2843 -7.0488 24 6 0.1700 -3.4253 -2.2462 25 6 0.1790 -2.2997 -1.1968 26 1 -0.4850 0.8400 -0.0004 27 1 1.0472 -4.3154 0.3361 28 1 2.3315 -3.4253 1.1877 29 1 3.4467 -5.0211 -0.2564 30 1 3.6408 -3.4290 -1.0208 31 1 1.5389 -5.4640 -1.6809 32 1 3.0272 -5.1805 -2.5936 33 1 1.4984 -5.0150 -4.4055 34 1 0.2545 -2.4484 -8.1510 35 1 1.1648 -1.4532 -6.9728 36 1 2.1780 -2.1597 -9.4617 37 1 3.2174 -1.8547 -8.0364 38 1 3.4231 -3.9476 -6.4272 39 1 2.4932 -5.3683 -6.9949 40 1 -0.5005 -3.1542 -3.0616 41 1 -0.1811 -4.3477 -1.7835 42 1 -0.7198 -2.3790 -0.5853 43 1 0.1732 -1.3386 -1.7111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052242121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:33 Heat of formation + Delta-G solvation = -87.040258 kcal Electronic energy + Delta-G solvation = -23541.444066 eV Core-core repulsion = 20200.002507 eV Total energy + Delta-G solvation = -3341.441558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.53636 -39.98317 -38.88264 -36.33751 -34.53269 -33.41152 -32.67823 -32.04917 -30.13392 -27.81182 -25.80508 -25.16621 -24.30296 -23.16427 -21.65937 -21.04491 -20.73229 -18.59979 -18.52617 -17.59757 -17.28212 -16.72949 -16.46029 -16.25487 -16.07620 -15.58807 -15.50627 -14.86976 -14.78577 -14.45697 -14.03009 -13.88758 -13.62194 -13.29648 -13.16128 -13.02057 -12.74015 -12.56088 -12.49277 -12.35086 -12.10024 -12.00225 -11.80138 -11.75334 -11.50382 -11.39564 -11.35613 -10.87435 -10.78558 -10.44399 -10.06720 -8.65137 -7.86845 -5.31882 1.39371 1.44802 1.49168 1.60999 2.15420 2.49310 2.97579 3.27771 3.39413 3.67866 3.77399 3.81998 3.86713 4.09520 4.09982 4.23523 4.29774 4.39851 4.46558 4.48214 4.69213 4.70755 4.74738 4.80026 4.85579 4.93947 4.99074 5.02446 5.03387 5.17063 5.23008 5.25364 5.36869 5.51655 5.58655 5.64095 5.69458 5.71619 5.77200 6.40386 6.61722 7.18103 7.33475 7.96432 8.33981 9.18064 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017820 B = 0.005131 C = 0.004428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.877374 B = 5456.210277 C = 6321.963141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.049 4.049 3 Si 0.956 3.044 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.262 4.262 8 H 0.064 0.936 9 N -0.604 5.604 10 C 0.147 3.853 11 C -0.133 4.133 12 C -0.103 4.103 13 C 0.162 3.838 14 H 0.047 0.953 15 N -0.707 5.707 16 C 0.509 3.491 17 O -0.583 6.583 18 C -0.136 4.136 19 H 0.139 0.861 20 C -0.152 4.152 21 C 0.045 3.955 22 O -0.385 6.385 23 C 0.060 3.940 24 C -0.131 4.131 25 C 0.195 3.805 26 H 0.246 0.754 27 H 0.049 0.951 28 H 0.037 0.963 29 H 0.090 0.910 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.416 0.584 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.134 0.866 40 H 0.048 0.952 41 H 0.075 0.925 42 H -0.004 1.004 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 -14.834 -13.946 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.785 3.215 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.392 4.392 8 H 0.082 0.918 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.173 4.173 12 C -0.141 4.141 13 C 0.057 3.943 14 H 0.065 0.935 15 N -0.359 5.359 16 C 0.296 3.704 17 O -0.463 6.463 18 C -0.157 4.157 19 H 0.157 0.843 20 C -0.190 4.190 21 C -0.031 4.031 22 O -0.303 6.303 23 C -0.017 4.017 24 C -0.171 4.171 25 C 0.069 3.931 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.254 0.746 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.152 0.848 40 H 0.067 0.933 41 H 0.094 0.906 42 H 0.014 0.986 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.398 -14.033 -13.901 20.042 hybrid contribution -0.013 1.462 0.448 1.529 sum 3.385 -12.571 -13.452 18.720 Atomic orbital electron populations 1.70200 1.06513 1.25483 1.55932 1.25704 0.95977 1.01274 1.01480 0.85507 0.77800 0.80102 0.78123 1.21532 1.22000 1.19369 1.19443 0.92499 0.86427 1.40881 0.91799 1.43835 1.32157 1.02778 1.53873 1.20959 0.95268 0.86950 0.94722 1.21295 0.98749 1.00193 0.97097 1.20518 1.00365 0.96757 0.96431 1.20171 0.95851 0.98384 0.79912 0.93456 1.46048 1.73863 1.10311 1.05706 1.20994 0.75097 0.85727 0.88560 1.90762 1.51124 1.19639 1.84741 1.22760 1.02897 1.00103 0.89965 0.84310 1.22978 1.00372 0.98244 0.97359 1.23523 0.95049 0.82769 1.01786 1.89103 1.88303 1.25526 1.27401 1.23466 0.93515 1.01778 0.82914 1.22217 0.96927 0.99748 0.98176 1.20578 0.87511 0.95460 0.89542 0.94452 0.93305 0.94425 0.89165 0.94609 0.90047 0.90072 0.74623 0.88290 0.90981 0.86664 0.92998 0.92872 0.84806 0.93337 0.90635 0.98645 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.38 11.01 21.65 0.24 -58.14 16 2 C -0.05 -2.91 4.87 84.86 0.41 -2.49 16 3 Si 0.96 48.06 29.58 68.60 2.03 50.09 16 4 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 5 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.26 -14.96 9.44 84.03 0.79 -14.16 16 8 H 0.06 3.56 7.88 -2.91 -0.02 3.54 16 9 N -0.60 -30.65 2.27 -698.47 -1.59 -32.24 16 10 C 0.15 5.84 5.66 87.37 0.49 6.33 16 11 C -0.13 -4.15 5.74 29.39 0.17 -3.98 16 12 C -0.10 -2.70 4.69 28.62 0.13 -2.57 16 13 C 0.16 5.47 2.06 44.16 0.09 5.56 16 14 H 0.05 2.18 6.92 -2.38 -0.02 2.16 16 15 N -0.71 -17.96 4.93 -446.49 -2.20 -20.15 16 16 C 0.51 15.18 6.83 87.66 0.60 15.77 16 17 O -0.58 -24.97 14.94 -3.02 -0.05 -25.02 16 18 C -0.14 -2.72 3.51 -10.52 -0.04 -2.75 16 19 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 20 C -0.15 -3.29 6.67 31.61 0.21 -3.08 16 21 C 0.05 0.89 7.63 72.49 0.55 1.44 16 22 O -0.38 -8.02 11.65 -148.98 -1.74 -9.75 16 23 C 0.06 1.04 7.17 72.49 0.52 1.56 16 24 C -0.13 -4.98 5.38 30.21 0.16 -4.82 16 25 C 0.19 9.95 4.66 86.47 0.40 10.36 16 26 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 27 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 28 H 0.04 1.53 7.99 -2.38 -0.02 1.51 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.78 7.36 -2.39 -0.02 1.77 16 32 H 0.08 1.66 8.04 -2.39 -0.02 1.64 16 33 H 0.42 6.52 8.60 -92.71 -0.80 5.72 16 34 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.07 2.08 6.50 -2.39 -0.02 2.07 16 36 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.05 1.05 7.86 -2.39 -0.02 1.03 16 39 H 0.13 1.34 8.14 -2.39 -0.02 1.33 16 40 H 0.05 1.89 7.84 -2.39 -0.02 1.87 16 41 H 0.08 2.44 7.32 -2.39 -0.02 2.42 16 42 H 0.00 -0.25 8.03 -2.39 -0.02 -0.27 16 43 H 0.03 1.64 6.33 -2.39 -0.02 1.63 16 Total: -1.00 -77.11 334.07 1.40 -75.70 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 0.20 Total: 12.35 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 4.51 Total: 7.17 kcal Atomic # 7 Polarization: -106.99 SS G_CDS: -3.55 Total: -110.54 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.78 Total: -34.77 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -77.11 1.40 -75.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052242121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.336 kcal (2) G-P(sol) polarization free energy of solvation -77.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds