Wall clock time and date at job start Tue Mar 31 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47279 * 299.99883 * 3 2 1 6 6 H 1.48506 * 109.46927 * 59.99902 * 3 2 1 7 7 C 1.38812 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00045 * 160.39683 * 7 2 1 9 9 N 1.36939 * 119.99989 * 340.39747 * 7 2 1 10 10 C 1.50168 * 120.54084 * 336.71236 * 9 7 2 11 11 C 1.46237 * 107.53473 * 109.56418 * 10 9 7 12 12 C 1.52533 * 114.27301 * 58.41538 * 11 10 9 13 13 C 1.50127 * 105.40936 * 270.58666 * 12 11 10 14 14 H 1.08996 * 109.21229 * 337.34085 * 13 12 11 15 15 N 1.46503 * 109.17198 * 218.00412 * 13 12 11 16 16 C 1.34781 * 119.99690 * 153.69906 * 15 13 12 17 17 O 1.21273 * 120.00111 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99399 * 180.02562 * 16 15 13 19 19 H 1.08992 * 110.45885 * 57.39722 * 18 16 15 20 20 C 1.54512 * 110.51021 * 180.02562 * 18 16 15 21 21 C 1.54474 * 104.06321 * 118.64075 * 20 18 16 22 22 O 1.44423 * 104.80269 * 23.98339 * 21 20 18 23 23 C 1.44426 * 105.27491 * 319.48197 * 22 21 20 24 24 C 1.54841 * 110.81366 * 97.68866 * 13 12 11 25 25 C 1.43339 * 120.66466 * 156.65911 * 9 7 2 26 26 H 0.97000 * 119.99618 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.84197 * 350.05918 * 10 9 7 28 28 H 1.09003 * 109.84701 * 229.07653 * 10 9 7 29 29 H 1.08997 * 108.52494 * 297.16931 * 11 10 9 30 30 H 1.08996 * 108.52030 * 179.64845 * 11 10 9 31 31 H 1.08994 * 110.24645 * 151.61748 * 12 11 10 32 32 H 1.08994 * 110.36995 * 29.62408 * 12 11 10 33 33 H 0.96996 * 119.99455 * 333.70374 * 15 13 12 34 34 H 1.08998 * 110.51252 * 237.29219 * 20 18 16 35 35 H 1.09002 * 110.50890 * 359.97438 * 20 18 16 36 36 H 1.09010 * 110.37167 * 142.81155 * 21 20 18 37 37 H 1.08994 * 110.37750 * 265.03412 * 21 20 18 38 38 H 1.08995 * 110.37054 * 281.68203 * 23 22 21 39 39 H 1.08994 * 110.37029 * 159.34651 * 23 22 21 40 40 H 1.08994 * 109.36196 * 81.33527 * 24 13 12 41 41 H 1.09004 * 109.36227 * 201.06219 * 24 13 12 42 42 H 1.09008 * 108.24846 * 149.97211 * 25 9 7 43 43 H 1.08998 * 108.00450 * 33.44085 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0433 -1.2295 -0.3133 9 7 1.3850 -2.3535 0.3989 10 6 0.1862 -2.2978 1.3016 11 6 -0.9806 -2.6831 0.5087 12 6 -0.8831 -4.0708 -0.1170 13 6 -0.2327 -3.8608 -1.4537 14 1 -0.3837 -2.8280 -1.7678 15 7 -0.8487 -4.7578 -2.4347 16 6 -0.8489 -4.4288 -3.7417 17 8 -0.3388 -3.3905 -4.1058 18 6 -1.4831 -5.3512 -4.7507 19 1 -2.5289 -5.5286 -4.5002 20 6 -1.3590 -4.7637 -6.1743 21 6 -0.5238 -5.8124 -6.9417 22 8 -0.7336 -7.0481 -6.2242 23 6 -0.7081 -6.6854 -4.8264 24 6 1.2859 -4.1537 -1.3788 25 6 1.8612 -3.6329 -0.0382 26 1 -0.4849 0.8401 -0.0004 27 1 0.0566 -1.2847 1.6824 28 1 0.3153 -2.9924 2.1317 29 1 -1.1141 -1.9522 -0.2888 30 1 -1.8607 -2.6542 1.1511 31 1 -1.8777 -4.4979 -0.2443 32 1 -0.2691 -4.7241 0.5028 33 1 -1.2564 -5.5883 -2.1434 34 1 -2.3435 -4.6525 -6.6288 35 1 -0.8394 -3.8059 -6.1483 36 1 -0.8801 -5.9043 -7.9678 37 1 0.5313 -5.5394 -6.9304 38 1 0.3190 -6.5474 -4.4889 39 1 -1.2060 -7.4479 -4.2275 40 1 1.4505 -5.2288 -1.4492 41 1 1.7912 -3.6559 -2.2064 42 1 1.6331 -4.3650 0.7366 43 1 2.9454 -3.5741 -0.1337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052242122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:37 Heat of formation + Delta-G solvation = -56.936953 kcal Electronic energy + Delta-G solvation = -23583.276487 eV Core-core repulsion = 20243.140306 eV Total energy + Delta-G solvation = -3340.136181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.33381 -38.73069 -37.48376 -34.65213 -32.58616 -32.01365 -31.55633 -30.11327 -29.03417 -26.14755 -24.22586 -23.65212 -23.02145 -21.86932 -20.30911 -19.48610 -19.10979 -17.41798 -16.78986 -16.56000 -15.55315 -15.44512 -15.11806 -15.01903 -14.42495 -14.25323 -13.75220 -13.38698 -13.20722 -13.07485 -12.57786 -12.26346 -12.15955 -11.88438 -11.57599 -11.50357 -11.37384 -11.24799 -10.90311 -10.78142 -10.60053 -10.33781 -10.22651 -10.03381 -10.00270 -9.77079 -9.50384 -9.38330 -9.34210 -8.59615 -8.35868 -6.69291 -5.76265 -3.14898 2.86633 3.40115 3.41133 3.49502 3.51440 3.86025 4.33102 4.54817 4.65615 4.79005 4.97591 5.10775 5.22385 5.36100 5.40685 5.45591 5.55664 5.58344 5.61071 5.73558 5.84851 5.88113 5.97517 6.01914 6.26021 6.29557 6.41034 6.47552 6.55916 6.70629 6.87489 6.89281 6.93781 7.01745 7.13666 7.22233 7.59616 7.77493 7.85015 7.98531 8.45737 8.53870 9.22114 9.89649 10.41926 11.31614 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.004593 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.106351 B = 6095.386210 C = 6618.818542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.248 4.248 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.165 3.835 11 C -0.130 4.130 12 C -0.121 4.121 13 C 0.154 3.846 14 H 0.103 0.897 15 N -0.726 5.726 16 C 0.513 3.487 17 O -0.527 6.527 18 C -0.146 4.146 19 H 0.106 0.894 20 C -0.147 4.147 21 C 0.045 3.955 22 O -0.375 6.375 23 C 0.059 3.941 24 C -0.151 4.151 25 C 0.161 3.839 26 H 0.252 0.748 27 H 0.090 0.910 28 H 0.006 0.994 29 H 0.103 0.897 30 H 0.029 0.971 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.391 0.609 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.029 0.971 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 -13.297 -6.101 15.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.085 0.915 9 N -0.309 5.309 10 C 0.041 3.959 11 C -0.169 4.169 12 C -0.159 4.159 13 C 0.051 3.949 14 H 0.121 0.879 15 N -0.376 5.376 16 C 0.297 3.703 17 O -0.403 6.403 18 C -0.168 4.168 19 H 0.124 0.876 20 C -0.185 4.185 21 C -0.032 4.032 22 O -0.294 6.294 23 C -0.019 4.019 24 C -0.193 4.193 25 C 0.032 3.968 26 H 0.062 0.938 27 H 0.109 0.891 28 H 0.024 0.976 29 H 0.121 0.879 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.224 0.776 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.116 0.884 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.570 -12.568 -6.422 14.835 hybrid contribution 0.071 0.641 0.062 0.648 sum -4.500 -11.926 -6.359 14.245 Atomic orbital electron populations 1.69965 1.05097 1.25098 1.54362 1.24881 0.95228 0.98217 1.01145 0.86263 0.79432 0.84207 0.77129 1.20409 1.21882 1.21697 1.19238 0.93673 0.85276 1.39553 0.91463 1.44261 1.33741 1.00900 1.52024 1.20167 0.85268 1.00553 0.89896 1.20931 0.98462 0.95013 1.02447 1.21363 0.98709 0.99751 0.96086 1.21305 0.92080 0.94965 0.86538 0.87907 1.46524 1.59453 1.24661 1.06979 1.20209 0.79902 0.86789 0.83362 1.90736 1.45163 1.25160 1.79208 1.22728 1.01883 0.96089 0.96137 0.87617 1.22960 1.01820 1.01296 0.92448 1.23465 0.99603 0.83432 0.96680 1.89104 1.93679 1.29677 1.16914 1.23335 0.99899 0.94478 0.84160 1.23301 0.95335 0.98437 1.02209 1.20338 0.96415 0.88221 0.91870 0.93832 0.89145 0.97569 0.87927 0.95199 0.92883 0.91883 0.77636 0.90352 0.87841 0.88934 0.91944 0.91652 0.88431 0.93722 0.92600 0.95300 0.94891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.10 9.43 55.49 0.52 -24.58 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.88 29.60 -169.99 -5.03 16.85 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 7 C -0.25 -6.75 9.63 -15.06 -0.15 -6.89 16 8 H 0.07 1.84 7.89 -52.48 -0.41 1.43 16 9 N -0.59 -14.30 2.60 -175.14 -0.46 -14.75 16 10 C 0.16 3.75 5.24 -5.20 -0.03 3.73 16 11 C -0.13 -2.70 5.02 -30.18 -0.15 -2.85 16 12 C -0.12 -2.08 5.33 -28.40 -0.15 -2.23 16 13 C 0.15 2.87 2.24 -68.39 -0.15 2.72 16 14 H 0.10 2.51 6.23 -51.93 -0.32 2.18 16 15 N -0.73 -10.71 4.94 -54.25 -0.27 -10.98 16 16 C 0.51 8.15 6.98 -10.98 -0.08 8.08 16 17 O -0.53 -11.05 14.93 5.56 0.08 -10.96 16 18 C -0.15 -1.71 3.51 -90.20 -0.32 -2.03 16 19 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 20 C -0.15 -1.71 6.67 -25.16 -0.17 -1.88 16 21 C 0.04 0.48 7.63 37.93 0.29 0.77 16 22 O -0.38 -4.51 11.65 -35.23 -0.41 -4.92 16 23 C 0.06 0.62 7.17 37.93 0.27 0.89 16 24 C -0.15 -2.89 6.00 -24.76 -0.15 -3.04 16 25 C 0.16 3.35 5.16 -4.71 -0.02 3.33 16 26 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 27 H 0.09 2.32 6.05 -51.93 -0.31 2.01 16 28 H 0.01 0.13 8.12 -51.93 -0.42 -0.29 16 29 H 0.10 2.55 5.29 -51.93 -0.27 2.27 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.78 7.86 -51.93 -0.41 0.37 16 32 H 0.06 1.03 6.29 -51.93 -0.33 0.71 16 33 H 0.39 4.32 8.50 -40.82 -0.35 3.97 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.45 6.50 -51.93 -0.34 1.11 16 36 H 0.09 0.80 8.14 -51.92 -0.42 0.37 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.74 7.86 -51.93 -0.41 0.34 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.03 0.54 6.88 -51.92 -0.36 0.19 16 43 H 0.03 0.69 7.99 -51.93 -0.41 0.28 16 LS Contribution 328.85 15.07 4.96 4.96 Total: -1.00 -30.91 328.85 -8.35 -39.26 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.86 Total: 4.52 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.89 Total: 0.61 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: -0.20 Total: -50.31 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.33 Total: -15.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.91 -8.35 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052242122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.673 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds