Wall clock time and date at job start Tue Mar 31 2020 06:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48498 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47279 * 299.99883 * 3 2 1 6 6 H 1.48506 * 109.46927 * 59.99902 * 3 2 1 7 7 C 1.38812 * 119.99767 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00045 * 160.39683 * 7 2 1 9 9 N 1.36939 * 119.99989 * 340.39747 * 7 2 1 10 10 C 1.50168 * 120.54084 * 336.71236 * 9 7 2 11 11 C 1.46237 * 107.53473 * 109.56418 * 10 9 7 12 12 C 1.52533 * 114.27301 * 58.41538 * 11 10 9 13 13 C 1.50127 * 105.40936 * 270.58666 * 12 11 10 14 14 H 1.08996 * 109.21229 * 337.34085 * 13 12 11 15 15 N 1.46503 * 109.17198 * 218.00412 * 13 12 11 16 16 C 1.34781 * 119.99690 * 153.69906 * 15 13 12 17 17 O 1.21273 * 120.00111 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99399 * 180.02562 * 16 15 13 19 19 H 1.08992 * 110.45885 * 57.39722 * 18 16 15 20 20 C 1.54512 * 110.51021 * 180.02562 * 18 16 15 21 21 C 1.54474 * 104.06321 * 118.64075 * 20 18 16 22 22 O 1.44423 * 104.80269 * 23.98339 * 21 20 18 23 23 C 1.44426 * 105.27491 * 319.48197 * 22 21 20 24 24 C 1.54841 * 110.81366 * 97.68866 * 13 12 11 25 25 C 1.43339 * 120.66466 * 156.65911 * 9 7 2 26 26 H 0.97000 * 119.99618 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.84197 * 350.05918 * 10 9 7 28 28 H 1.09003 * 109.84701 * 229.07653 * 10 9 7 29 29 H 1.08997 * 108.52494 * 297.16931 * 11 10 9 30 30 H 1.08996 * 108.52030 * 179.64845 * 11 10 9 31 31 H 1.08994 * 110.24645 * 151.61748 * 12 11 10 32 32 H 1.08994 * 110.36995 * 29.62408 * 12 11 10 33 33 H 0.96996 * 119.99455 * 333.70374 * 15 13 12 34 34 H 1.08998 * 110.51252 * 237.29219 * 20 18 16 35 35 H 1.09002 * 110.50890 * 359.97438 * 20 18 16 36 36 H 1.09010 * 110.37167 * 142.81155 * 21 20 18 37 37 H 1.08994 * 110.37750 * 265.03412 * 21 20 18 38 38 H 1.08995 * 110.37054 * 281.68203 * 23 22 21 39 39 H 1.08994 * 110.37029 * 159.34651 * 23 22 21 40 40 H 1.08994 * 109.36196 * 81.33527 * 24 13 12 41 41 H 1.09004 * 109.36227 * 201.06219 * 24 13 12 42 42 H 1.09008 * 108.24846 * 149.97211 * 25 9 7 43 43 H 1.08998 * 108.00450 * 33.44085 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0433 -1.2295 -0.3133 9 7 1.3850 -2.3535 0.3989 10 6 0.1862 -2.2978 1.3016 11 6 -0.9806 -2.6831 0.5087 12 6 -0.8831 -4.0708 -0.1170 13 6 -0.2327 -3.8608 -1.4537 14 1 -0.3837 -2.8280 -1.7678 15 7 -0.8487 -4.7578 -2.4347 16 6 -0.8489 -4.4288 -3.7417 17 8 -0.3388 -3.3905 -4.1058 18 6 -1.4831 -5.3512 -4.7507 19 1 -2.5289 -5.5286 -4.5002 20 6 -1.3590 -4.7637 -6.1743 21 6 -0.5238 -5.8124 -6.9417 22 8 -0.7336 -7.0481 -6.2242 23 6 -0.7081 -6.6854 -4.8264 24 6 1.2859 -4.1537 -1.3788 25 6 1.8612 -3.6329 -0.0382 26 1 -0.4849 0.8401 -0.0004 27 1 0.0566 -1.2847 1.6824 28 1 0.3153 -2.9924 2.1317 29 1 -1.1141 -1.9522 -0.2888 30 1 -1.8607 -2.6542 1.1511 31 1 -1.8777 -4.4979 -0.2443 32 1 -0.2691 -4.7241 0.5028 33 1 -1.2564 -5.5883 -2.1434 34 1 -2.3435 -4.6525 -6.6288 35 1 -0.8394 -3.8059 -6.1483 36 1 -0.8801 -5.9043 -7.9678 37 1 0.5313 -5.5394 -6.9304 38 1 0.3190 -6.5474 -4.4889 39 1 -1.2060 -7.4479 -4.2275 40 1 1.4505 -5.2288 -1.4492 41 1 1.7912 -3.6559 -2.2064 42 1 1.6331 -4.3650 0.7366 43 1 2.9454 -3.5741 -0.1337 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052242122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:36 Heat of formation + Delta-G solvation = -78.507671 kcal Electronic energy + Delta-G solvation = -23584.211864 eV Core-core repulsion = 20243.140306 eV Total energy + Delta-G solvation = -3341.071558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50638 -39.98691 -38.94506 -36.27904 -34.12234 -33.32173 -33.23548 -31.64205 -30.07851 -27.93697 -25.79112 -25.17416 -24.16527 -23.07479 -21.90390 -20.84531 -20.66559 -18.62827 -18.52867 -17.59181 -16.95126 -16.87044 -16.46788 -16.25148 -15.93286 -15.64065 -15.50882 -15.03696 -14.64754 -14.26657 -13.94792 -13.83124 -13.50181 -13.24084 -13.23426 -13.09594 -12.73326 -12.50003 -12.35885 -12.31337 -12.08832 -11.91557 -11.79789 -11.74361 -11.55514 -11.20513 -11.12061 -10.87082 -10.75223 -10.45708 -9.95032 -8.64535 -7.84044 -5.23761 1.42984 1.46162 1.55026 1.62077 2.20773 2.53075 2.98465 3.29259 3.39868 3.62937 3.77223 3.86098 4.04057 4.07445 4.16219 4.23802 4.30928 4.36003 4.50096 4.64022 4.70217 4.74472 4.75793 4.80520 4.88222 4.90071 4.99761 5.02231 5.08829 5.18355 5.29887 5.32309 5.43070 5.51706 5.66642 5.68815 5.71384 5.79724 6.20658 6.42333 6.64079 7.18893 7.34882 7.92758 8.40374 9.20245 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022812 B = 0.004593 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.106351 B = 6095.386210 C = 6618.818542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.043 4.043 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.300 1.300 6 H -0.286 1.286 7 C -0.260 4.260 8 H 0.057 0.943 9 N -0.603 5.603 10 C 0.167 3.833 11 C -0.124 4.124 12 C -0.106 4.106 13 C 0.166 3.834 14 H 0.039 0.961 15 N -0.710 5.710 16 C 0.509 3.491 17 O -0.587 6.587 18 C -0.137 4.137 19 H 0.137 0.863 20 C -0.151 4.151 21 C 0.045 3.955 22 O -0.384 6.384 23 C 0.061 3.939 24 C -0.140 4.140 25 C 0.155 3.845 26 H 0.245 0.755 27 H 0.054 0.946 28 H 0.034 0.966 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.052 0.948 38 H 0.053 0.947 39 H 0.133 0.867 40 H 0.082 0.918 41 H 0.015 0.985 42 H 0.061 0.939 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.913 -16.377 -5.743 18.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.239 4.239 3 Si 0.783 3.217 4 H -0.197 1.197 5 H -0.228 1.228 6 H -0.213 1.213 7 C -0.391 4.391 8 H 0.075 0.925 9 N -0.325 5.325 10 C 0.043 3.957 11 C -0.163 4.163 12 C -0.144 4.144 13 C 0.062 3.938 14 H 0.057 0.943 15 N -0.361 5.361 16 C 0.296 3.704 17 O -0.467 6.467 18 C -0.158 4.158 19 H 0.155 0.845 20 C -0.189 4.189 21 C -0.031 4.031 22 O -0.303 6.303 23 C -0.016 4.016 24 C -0.182 4.182 25 C 0.026 3.974 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.253 0.747 34 H 0.117 0.883 35 H 0.090 0.910 36 H 0.134 0.866 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.151 0.849 40 H 0.101 0.899 41 H 0.034 0.966 42 H 0.079 0.921 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -5.658 -15.713 -6.045 17.761 hybrid contribution 0.429 1.589 -0.065 1.647 sum -5.228 -14.124 -6.110 16.253 Atomic orbital electron populations 1.70141 1.05874 1.24967 1.55172 1.25503 0.96019 1.00661 1.01732 0.85416 0.78695 0.81005 0.76570 1.19734 1.22797 1.21274 1.19399 0.93516 0.86885 1.39251 0.92529 1.44424 1.34151 1.01286 1.52602 1.20124 0.85592 0.99295 0.90639 1.20746 0.98207 0.96286 1.01070 1.21268 1.00859 0.97756 0.94487 1.20804 0.92266 0.92545 0.88207 0.94280 1.46254 1.58808 1.24915 1.06149 1.21014 0.78864 0.86470 0.84099 1.90728 1.47744 1.28046 1.80197 1.22759 1.03210 0.95430 0.94402 0.84480 1.22975 1.02718 1.00097 0.93100 1.23519 0.99041 0.82814 0.97725 1.89101 1.93614 1.30015 1.17554 1.23452 0.99502 0.94564 0.84089 1.23161 0.95273 1.00068 0.99662 1.20489 0.95973 0.87480 0.93430 0.94524 0.92732 0.94827 0.92442 0.93610 0.89503 0.89724 0.74721 0.88293 0.90980 0.86623 0.92931 0.92844 0.84897 0.89927 0.96627 0.92074 0.95699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.26 9.43 21.65 0.20 -53.05 16 2 C -0.04 -2.45 4.91 84.86 0.42 -2.03 16 3 Si 0.95 46.44 29.60 68.60 2.03 48.47 16 4 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 7 C -0.26 -14.61 9.63 84.03 0.81 -13.80 16 8 H 0.06 3.22 7.89 -2.91 -0.02 3.20 16 9 N -0.60 -29.60 2.60 -708.03 -1.84 -31.44 16 10 C 0.17 7.56 5.24 83.58 0.44 8.00 16 11 C -0.12 -5.09 5.02 28.36 0.14 -4.95 16 12 C -0.11 -3.33 5.33 29.51 0.16 -3.17 16 13 C 0.17 6.10 2.24 44.69 0.10 6.20 16 14 H 0.04 1.99 6.23 -2.39 -0.01 1.98 16 15 N -0.71 -19.51 4.94 -443.95 -2.19 -21.70 16 16 C 0.51 15.89 6.98 87.66 0.61 16.50 16 17 O -0.59 -25.83 14.93 -3.01 -0.04 -25.88 16 18 C -0.14 -2.86 3.51 -10.52 -0.04 -2.90 16 19 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 20 C -0.15 -3.35 6.67 31.61 0.21 -3.13 16 21 C 0.05 0.90 7.63 72.48 0.55 1.46 16 22 O -0.38 -8.17 11.65 -148.98 -1.74 -9.90 16 23 C 0.06 1.10 7.17 72.49 0.52 1.62 16 24 C -0.14 -5.26 6.00 31.87 0.19 -5.07 16 25 C 0.15 6.28 5.16 87.61 0.45 6.74 16 26 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 27 H 0.05 2.86 6.05 -2.38 -0.01 2.85 16 28 H 0.03 1.33 8.12 -2.39 -0.02 1.31 16 29 H 0.06 2.95 5.29 -2.39 -0.01 2.94 16 30 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 2.17 7.86 -2.39 -0.02 2.15 16 32 H 0.08 2.36 6.29 -2.39 -0.02 2.34 16 33 H 0.42 7.40 8.50 -92.71 -0.79 6.61 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 2.10 6.50 -2.39 -0.02 2.09 16 36 H 0.12 1.73 8.14 -2.38 -0.02 1.71 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.05 1.10 7.86 -2.39 -0.02 1.08 16 39 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.08 2.47 8.12 -2.39 -0.02 2.45 16 41 H 0.01 0.68 8.14 -2.38 -0.02 0.66 16 42 H 0.06 2.09 6.88 -2.38 -0.02 2.08 16 43 H 0.02 1.03 7.99 -2.39 -0.02 1.02 16 Total: -1.00 -72.85 328.85 1.20 -71.65 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.22 Total: 16.40 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 4.57 Total: 5.46 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -3.83 Total: -106.20 kcal Atomic # 8 Polarization: -34.00 SS G_CDS: -1.78 Total: -35.78 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -72.85 1.20 -71.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052242122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.859 kcal (2) G-P(sol) polarization free energy of solvation -72.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds