Wall clock time and date at job start Tue Mar 31 2020 06:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46864 * 299.99874 * 3 2 1 6 6 H 1.48496 * 109.47456 * 59.99804 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00155 * 195.68286 * 7 2 1 9 9 N 1.36940 * 120.00223 * 15.68294 * 7 2 1 10 10 C 1.47611 * 118.63894 * 26.46430 * 9 7 2 11 11 C 1.54006 * 112.13534 * 137.84794 * 10 9 7 12 12 C 1.50883 * 110.09517 * 319.48600 * 11 10 9 13 13 C 1.52571 * 109.37457 * 91.85932 * 12 11 10 14 14 H 1.09007 * 108.50934 * 36.22734 * 13 12 11 15 15 N 1.46495 * 108.51200 * 153.87585 * 13 12 11 16 16 C 1.34778 * 119.99943 * 204.99849 * 15 13 12 17 17 O 1.21281 * 120.00208 * 0.02562 * 16 15 13 18 18 C 1.50701 * 119.99631 * 179.97438 * 16 15 13 19 19 H 1.08993 * 110.45893 * 302.60696 * 18 16 15 20 20 C 1.54515 * 110.50876 * 179.97438 * 18 16 15 21 21 C 1.54476 * 104.06352 * 241.35749 * 20 18 16 22 22 O 1.44429 * 104.80509 * 23.98023 * 21 20 18 23 23 C 1.44425 * 105.27322 * 319.48802 * 22 21 20 24 24 C 1.47098 * 114.32601 * 274.97579 * 13 12 11 25 25 C 1.44575 * 118.64506 * 206.48242 * 9 7 2 26 26 H 0.97000 * 120.00069 * 0.02562 * 1 2 3 27 27 H 1.08999 * 108.94298 * 258.55299 * 10 9 7 28 28 H 1.08993 * 108.94719 * 17.27188 * 10 9 7 29 29 H 1.09000 * 109.39367 * 199.27673 * 11 10 9 30 30 H 1.09002 * 109.33561 * 79.66176 * 11 10 9 31 31 H 1.08997 * 109.48910 * 331.88160 * 12 11 10 32 32 H 1.09003 * 109.48835 * 211.83130 * 12 11 10 33 33 H 0.96998 * 120.00102 * 25.00395 * 15 13 12 34 34 H 1.09004 * 110.50730 * 0.02562 * 20 18 16 35 35 H 1.09002 * 110.50847 * 122.57311 * 20 18 16 36 36 H 1.09007 * 110.37183 * 142.81031 * 21 20 18 37 37 H 1.08995 * 110.37549 * 265.14619 * 21 20 18 38 38 H 1.09001 * 110.37313 * 281.68038 * 23 22 21 39 39 H 1.08996 * 110.37029 * 159.34355 * 23 22 21 40 40 H 1.08997 * 109.32733 * 183.06288 * 24 13 12 41 41 H 1.08997 * 109.32351 * 302.71619 * 24 13 12 42 42 H 1.09007 * 109.44935 * 150.68488 * 25 9 7 43 43 H 1.09001 * 109.45005 * 30.76737 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0601 -1.2195 0.2534 9 7 1.3638 -2.3661 -0.3195 10 6 0.1793 -2.2992 -1.1978 11 6 0.1714 -3.4251 -2.2484 12 6 1.5629 -3.6362 -2.7924 13 6 2.2712 -4.7076 -1.9687 14 1 1.5400 -5.4635 -1.6822 15 7 3.2896 -5.3425 -2.8088 16 6 3.6986 -6.5981 -2.5391 17 8 3.2231 -7.2025 -1.6013 18 6 4.7459 -7.2514 -3.4037 19 1 4.4215 -7.2734 -4.4440 20 6 5.0490 -8.6804 -2.9003 21 6 6.5462 -8.6356 -2.5225 22 8 6.8177 -7.2425 -2.2548 23 6 6.0958 -6.5123 -3.2704 24 6 2.9230 -4.2029 -0.7505 25 6 1.8694 -3.6098 0.2170 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7196 -2.3789 -0.5863 28 1 0.1734 -1.3379 -1.7114 29 1 -0.4984 -3.1541 -3.0645 30 1 -0.1799 -4.3477 -1.7862 31 1 2.1222 -2.7026 -2.7327 32 1 1.5020 -3.9580 -3.8321 33 1 3.6697 -4.8592 -3.5590 34 1 4.4410 -8.9144 -2.0263 35 1 4.8743 -9.4093 -3.6917 36 1 6.7309 -9.2361 -1.6317 37 1 7.1578 -8.9887 -3.3527 38 1 6.6383 -6.5397 -4.2154 39 1 5.9346 -5.4817 -2.9543 40 1 3.4466 -5.0212 -0.2561 41 1 3.6392 -3.4266 -1.0198 42 1 1.0468 -4.3154 0.3347 43 1 2.3306 -3.4256 1.1873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052242123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:40 Heat of formation + Delta-G solvation = -63.654535 kcal Electronic energy + Delta-G solvation = -23343.138041 eV Core-core repulsion = 20002.710563 eV Total energy + Delta-G solvation = -3340.427477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.53717 -38.85718 -37.42733 -34.80884 -32.74555 -32.18917 -31.57249 -30.22188 -29.07335 -26.08159 -24.35759 -23.69163 -23.16618 -22.01629 -20.15660 -19.89847 -19.13633 -17.44793 -16.77548 -16.59397 -16.12559 -15.68996 -15.14492 -15.06964 -14.42782 -14.04233 -13.90389 -13.58985 -13.39639 -12.88621 -12.83437 -12.51947 -12.13405 -11.95323 -11.69089 -11.55560 -11.37371 -11.23182 -11.14139 -10.84845 -10.69623 -10.44308 -10.27157 -10.12535 -10.05271 -9.86346 -9.74956 -9.60521 -9.46008 -8.80737 -8.38147 -6.63641 -5.75911 -3.19271 2.70224 3.27775 3.37150 3.45628 3.47555 3.75647 4.21040 4.51826 4.58322 4.68684 4.87989 4.95104 5.13191 5.22061 5.32814 5.36343 5.42756 5.46751 5.50206 5.59871 5.63755 5.73260 5.97572 6.03564 6.08615 6.23039 6.33899 6.48776 6.50951 6.52776 6.68231 6.77191 6.84388 6.86411 6.94983 7.08506 7.44973 7.66998 7.72989 7.85272 8.35810 8.49753 9.26924 9.93947 10.39186 11.31486 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026855 B = 0.004090 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.395262 B = 6844.080091 C = 7340.791970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.178 3.822 11 C -0.141 4.141 12 C -0.111 4.111 13 C 0.163 3.837 14 H 0.071 0.929 15 N -0.727 5.727 16 C 0.519 3.481 17 O -0.536 6.536 18 C -0.148 4.148 19 H 0.108 0.892 20 C -0.147 4.147 21 C 0.045 3.955 22 O -0.369 6.369 23 C 0.056 3.944 24 C -0.154 4.154 25 C 0.162 3.838 26 H 0.252 0.748 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.081 0.919 32 H 0.049 0.951 33 H 0.395 0.605 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.033 0.967 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.648 -14.043 -10.851 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.386 4.386 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.053 3.947 11 C -0.180 4.180 12 C -0.149 4.149 13 C 0.060 3.940 14 H 0.089 0.911 15 N -0.377 5.377 16 C 0.304 3.696 17 O -0.413 6.413 18 C -0.170 4.170 19 H 0.126 0.874 20 C -0.185 4.185 21 C -0.031 4.031 22 O -0.288 6.288 23 C -0.022 4.022 24 C -0.196 4.196 25 C 0.033 3.967 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.228 0.772 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.115 0.885 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.280 -14.250 -9.979 19.267 hybrid contribution 0.466 1.069 -0.694 1.357 sum 8.747 -13.181 -10.673 19.083 Atomic orbital electron populations 1.70083 1.05188 1.25214 1.54411 1.25021 0.95246 0.98282 1.00912 0.86274 0.79383 0.84203 0.77230 1.20323 1.21673 1.21775 1.19260 0.92430 0.84982 1.41901 0.91698 1.43693 1.32369 1.01859 1.53297 1.21025 0.88638 0.95485 0.89560 1.21990 0.95095 1.01035 0.99895 1.21237 0.97694 0.99189 0.96785 1.20035 0.88956 0.94465 0.90527 0.91103 1.46495 1.42893 1.14964 1.33357 1.20184 0.82571 0.81798 0.85006 1.90667 1.56928 1.63548 1.30161 1.22745 0.96182 0.97079 1.00998 0.87363 1.22996 0.97417 0.94566 1.03509 1.23447 0.94517 0.83878 1.01292 1.89185 1.70882 1.17308 1.51406 1.23402 0.89122 0.97029 0.92620 1.21857 1.00759 0.99949 0.97022 1.20567 0.93869 0.88205 0.94017 0.93792 0.95717 0.90708 0.92559 0.93449 0.90055 0.93236 0.77208 0.88067 0.90200 0.88869 0.92295 0.91219 0.88534 0.92706 0.92004 0.94860 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 11.01 55.49 0.61 -25.28 16 2 C 0.00 0.10 4.87 -17.43 -0.08 0.02 16 3 Si 0.90 21.50 29.58 -169.99 -5.03 16.48 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 7 C -0.26 -6.88 9.44 -15.06 -0.14 -7.02 16 8 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16 9 N -0.59 -14.41 2.27 -172.05 -0.39 -14.80 16 10 C 0.18 4.15 4.67 -2.91 -0.01 4.13 16 11 C -0.14 -2.57 5.71 -27.27 -0.16 -2.73 16 12 C -0.11 -1.83 4.97 -28.01 -0.14 -1.97 16 13 C 0.16 2.71 1.93 -70.99 -0.14 2.57 16 14 H 0.07 1.30 6.81 -51.92 -0.35 0.95 16 15 N -0.73 -9.77 4.76 -56.81 -0.27 -10.04 16 16 C 0.52 7.33 6.81 -10.98 -0.07 7.25 16 17 O -0.54 -9.75 14.45 5.56 0.08 -9.67 16 18 C -0.15 -1.48 3.51 -90.20 -0.32 -1.80 16 19 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.15 -1.43 6.67 -25.16 -0.17 -1.60 16 21 C 0.05 0.43 7.63 37.93 0.29 0.72 16 22 O -0.37 -4.62 11.65 -35.23 -0.41 -5.04 16 23 C 0.06 0.54 7.17 37.94 0.27 0.82 16 24 C -0.15 -2.91 5.16 -28.59 -0.15 -3.05 16 25 C 0.16 3.50 5.65 -4.09 -0.02 3.48 16 26 H 0.25 6.99 8.31 -40.82 -0.34 6.66 16 27 H 0.02 0.63 8.03 -51.93 -0.42 0.22 16 28 H 0.07 1.93 6.33 -51.93 -0.33 1.60 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.85 7.32 -51.93 -0.38 0.47 16 31 H 0.08 1.52 7.48 -51.93 -0.39 1.13 16 32 H 0.05 0.69 8.04 -51.93 -0.42 0.27 16 33 H 0.39 4.15 8.56 -40.82 -0.35 3.80 16 34 H 0.10 1.25 6.50 -51.93 -0.34 0.91 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.98 7.71 -51.93 -0.40 0.58 16 40 H 0.05 1.06 7.45 -51.93 -0.39 0.67 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 43 H 0.05 1.07 7.99 -51.93 -0.41 0.66 16 LS Contribution 332.72 15.07 5.01 5.01 Total: -1.00 -31.69 332.72 -8.34 -40.03 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -7.10 Total: 2.49 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.84 Total: 0.82 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -0.05 Total: -50.12 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -0.33 Total: -14.70 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.69 -8.34 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052242123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.629 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds