Wall clock time and date at job start Tue Mar 31 2020 06:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00065 * 2 1 4 4 H 1.48497 * 109.47232 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46864 * 299.99874 * 3 2 1 6 6 H 1.48496 * 109.47456 * 59.99804 * 3 2 1 7 7 C 1.38808 * 119.99870 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00155 * 195.68286 * 7 2 1 9 9 N 1.36940 * 120.00223 * 15.68294 * 7 2 1 10 10 C 1.47611 * 118.63894 * 26.46430 * 9 7 2 11 11 C 1.54006 * 112.13534 * 137.84794 * 10 9 7 12 12 C 1.50883 * 110.09517 * 319.48600 * 11 10 9 13 13 C 1.52571 * 109.37457 * 91.85932 * 12 11 10 14 14 H 1.09007 * 108.50934 * 36.22734 * 13 12 11 15 15 N 1.46495 * 108.51200 * 153.87585 * 13 12 11 16 16 C 1.34778 * 119.99943 * 204.99849 * 15 13 12 17 17 O 1.21281 * 120.00208 * 0.02562 * 16 15 13 18 18 C 1.50701 * 119.99631 * 179.97438 * 16 15 13 19 19 H 1.08993 * 110.45893 * 302.60696 * 18 16 15 20 20 C 1.54515 * 110.50876 * 179.97438 * 18 16 15 21 21 C 1.54476 * 104.06352 * 241.35749 * 20 18 16 22 22 O 1.44429 * 104.80509 * 23.98023 * 21 20 18 23 23 C 1.44425 * 105.27322 * 319.48802 * 22 21 20 24 24 C 1.47098 * 114.32601 * 274.97579 * 13 12 11 25 25 C 1.44575 * 118.64506 * 206.48242 * 9 7 2 26 26 H 0.97000 * 120.00069 * 0.02562 * 1 2 3 27 27 H 1.08999 * 108.94298 * 258.55299 * 10 9 7 28 28 H 1.08993 * 108.94719 * 17.27188 * 10 9 7 29 29 H 1.09000 * 109.39367 * 199.27673 * 11 10 9 30 30 H 1.09002 * 109.33561 * 79.66176 * 11 10 9 31 31 H 1.08997 * 109.48910 * 331.88160 * 12 11 10 32 32 H 1.09003 * 109.48835 * 211.83130 * 12 11 10 33 33 H 0.96998 * 120.00102 * 25.00395 * 15 13 12 34 34 H 1.09004 * 110.50730 * 0.02562 * 20 18 16 35 35 H 1.09002 * 110.50847 * 122.57311 * 20 18 16 36 36 H 1.09007 * 110.37183 * 142.81031 * 21 20 18 37 37 H 1.08995 * 110.37549 * 265.14619 * 21 20 18 38 38 H 1.09001 * 110.37313 * 281.68038 * 23 22 21 39 39 H 1.08996 * 110.37029 * 159.34355 * 23 22 21 40 40 H 1.08997 * 109.32733 * 183.06288 * 24 13 12 41 41 H 1.08997 * 109.32351 * 302.71619 * 24 13 12 42 42 H 1.09007 * 109.44935 * 150.68488 * 25 9 7 43 43 H 1.09001 * 109.45005 * 30.76737 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0601 -1.2195 0.2534 9 7 1.3638 -2.3661 -0.3195 10 6 0.1793 -2.2992 -1.1978 11 6 0.1714 -3.4251 -2.2484 12 6 1.5629 -3.6362 -2.7924 13 6 2.2712 -4.7076 -1.9687 14 1 1.5400 -5.4635 -1.6822 15 7 3.2896 -5.3425 -2.8088 16 6 3.6986 -6.5981 -2.5391 17 8 3.2231 -7.2025 -1.6013 18 6 4.7459 -7.2514 -3.4037 19 1 4.4215 -7.2734 -4.4440 20 6 5.0490 -8.6804 -2.9003 21 6 6.5462 -8.6356 -2.5225 22 8 6.8177 -7.2425 -2.2548 23 6 6.0958 -6.5123 -3.2704 24 6 2.9230 -4.2029 -0.7505 25 6 1.8694 -3.6098 0.2170 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7196 -2.3789 -0.5863 28 1 0.1734 -1.3379 -1.7114 29 1 -0.4984 -3.1541 -3.0645 30 1 -0.1799 -4.3477 -1.7862 31 1 2.1222 -2.7026 -2.7327 32 1 1.5020 -3.9580 -3.8321 33 1 3.6697 -4.8592 -3.5590 34 1 4.4410 -8.9144 -2.0263 35 1 4.8743 -9.4093 -3.6917 36 1 6.7309 -9.2361 -1.6317 37 1 7.1578 -8.9887 -3.3527 38 1 6.6383 -6.5397 -4.2154 39 1 5.9346 -5.4817 -2.9543 40 1 3.4466 -5.0212 -0.2561 41 1 3.6392 -3.4266 -1.0198 42 1 1.0468 -4.3154 0.3347 43 1 2.3306 -3.4256 1.1873 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052242123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:39 Heat of formation + Delta-G solvation = -85.241291 kcal Electronic energy + Delta-G solvation = -23344.074113 eV Core-core repulsion = 20002.710563 eV Total energy + Delta-G solvation = -3341.363549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.58059 -39.99527 -38.81581 -36.39686 -34.19639 -33.38108 -33.20049 -31.70318 -30.00582 -27.87653 -25.84933 -25.26833 -24.30363 -22.98770 -21.53619 -21.28325 -20.64194 -18.61290 -18.38997 -17.57377 -17.21497 -16.98067 -16.70622 -15.99050 -15.84404 -15.57310 -15.31417 -15.19787 -14.93868 -14.31668 -14.17388 -13.64385 -13.61561 -13.24182 -13.02416 -12.87784 -12.74625 -12.43095 -12.39993 -12.29838 -12.13503 -12.03153 -11.87544 -11.75367 -11.55920 -11.50391 -11.35171 -10.99673 -10.55155 -10.44068 -10.06981 -8.65603 -7.84375 -5.30909 1.46169 1.48727 1.58741 1.63464 2.19642 2.52735 3.04181 3.29333 3.43858 3.65381 3.72238 3.80743 3.94836 4.11328 4.20055 4.30055 4.32375 4.43705 4.43777 4.46193 4.65251 4.67629 4.73972 4.76781 4.84003 4.92871 4.96366 4.98703 5.11261 5.14419 5.21113 5.24044 5.33276 5.49021 5.57825 5.59999 5.68934 5.82337 5.82954 6.42003 6.61751 7.19938 7.29956 7.95035 8.34634 9.20960 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026855 B = 0.004090 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.395262 B = 6844.080091 C = 7340.791970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.046 4.046 3 Si 0.963 3.037 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.295 1.295 7 C -0.263 4.263 8 H 0.062 0.938 9 N -0.601 5.601 10 C 0.187 3.813 11 C -0.130 4.130 12 C -0.100 4.100 13 C 0.170 3.830 14 H 0.056 0.944 15 N -0.716 5.716 16 C 0.513 3.487 17 O -0.583 6.583 18 C -0.140 4.140 19 H 0.148 0.852 20 C -0.147 4.147 21 C 0.042 3.958 22 O -0.407 6.407 23 C 0.054 3.946 24 C -0.134 4.134 25 C 0.159 3.841 26 H 0.249 0.751 27 H -0.009 1.009 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.413 0.587 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.034 0.966 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.198 -14.932 -13.589 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.241 4.241 3 Si 0.792 3.208 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.223 1.223 7 C -0.393 4.393 8 H 0.080 0.920 9 N -0.323 5.323 10 C 0.062 3.938 11 C -0.169 4.169 12 C -0.138 4.138 13 C 0.065 3.935 14 H 0.074 0.926 15 N -0.367 5.367 16 C 0.301 3.699 17 O -0.463 6.463 18 C -0.161 4.161 19 H 0.166 0.834 20 C -0.185 4.185 21 C -0.034 4.034 22 O -0.326 6.326 23 C -0.023 4.023 24 C -0.175 4.175 25 C 0.032 3.968 26 H 0.058 0.942 27 H 0.009 0.991 28 H 0.065 0.935 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.249 0.751 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.124 0.876 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.053 0.947 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 9.866 -15.154 -12.751 22.126 hybrid contribution -0.022 1.289 0.236 1.310 sum 9.844 -13.866 -12.515 21.113 Atomic orbital electron populations 1.70241 1.06528 1.25600 1.55751 1.25724 0.95977 1.01217 1.01199 0.85272 0.78591 0.80201 0.76766 1.19314 1.21401 1.22267 1.19502 0.92481 0.86071 1.41291 0.91991 1.43858 1.32449 1.02048 1.53969 1.20825 0.86869 0.96256 0.89831 1.21846 0.97111 0.98980 0.98973 1.21114 0.95849 0.98107 0.98702 1.19694 0.89337 0.94162 0.90263 0.92559 1.46263 1.42112 1.14997 1.33309 1.21006 0.82674 0.81490 0.84768 1.90658 1.58654 1.64644 1.32337 1.22818 0.94788 0.96541 1.01946 0.83408 1.23003 0.97066 0.95232 1.03190 1.23618 0.94725 0.82649 1.02375 1.89147 1.71496 1.18998 1.52958 1.23585 0.89012 0.96202 0.93526 1.21578 0.99450 0.99051 0.97394 1.20639 0.94521 0.87449 0.94238 0.94199 0.99139 0.93495 0.90238 0.92970 0.92036 0.89368 0.75069 0.91349 0.87156 0.89202 0.89331 0.87633 0.89453 0.93416 0.92809 0.94722 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 11.01 21.65 0.24 -54.72 16 2 C -0.05 -2.54 4.87 84.86 0.41 -2.13 16 3 Si 0.96 44.69 29.58 68.60 2.03 46.72 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 7 C -0.26 -14.39 9.44 84.03 0.79 -13.59 16 8 H 0.06 3.37 7.88 -2.91 -0.02 3.34 16 9 N -0.60 -29.99 2.27 -698.25 -1.59 -31.58 16 10 C 0.19 8.92 4.67 86.51 0.40 9.32 16 11 C -0.13 -4.60 5.71 30.25 0.17 -4.43 16 12 C -0.10 -3.08 4.97 29.76 0.15 -2.94 16 13 C 0.17 5.43 1.93 43.01 0.08 5.51 16 14 H 0.06 2.02 6.81 -2.38 -0.02 2.01 16 15 N -0.72 -17.60 4.76 -452.04 -2.15 -19.74 16 16 C 0.51 13.59 6.81 87.66 0.60 14.18 16 17 O -0.58 -21.09 14.45 -3.03 -0.04 -21.14 16 18 C -0.14 -2.33 3.51 -10.52 -0.04 -2.37 16 19 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 20 C -0.15 -2.50 6.67 31.61 0.21 -2.29 16 21 C 0.04 0.70 7.63 72.48 0.55 1.25 16 22 O -0.41 -9.46 11.65 -148.98 -1.74 -11.19 16 23 C 0.05 0.88 7.17 72.49 0.52 1.40 16 24 C -0.13 -5.03 5.16 29.39 0.15 -4.88 16 25 C 0.16 7.04 5.65 87.37 0.49 7.54 16 26 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 27 H -0.01 -0.51 8.03 -2.39 -0.02 -0.53 16 28 H 0.05 2.48 6.33 -2.39 -0.02 2.47 16 29 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.05 1.81 7.32 -2.39 -0.02 1.79 16 31 H 0.06 2.20 7.48 -2.39 -0.02 2.19 16 32 H 0.09 2.09 8.04 -2.39 -0.02 2.07 16 33 H 0.41 7.27 8.56 -92.71 -0.79 6.48 16 34 H 0.07 1.66 6.50 -2.38 -0.02 1.64 16 35 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.09 1.56 7.71 -2.39 -0.02 1.55 16 40 H 0.05 1.86 7.45 -2.39 -0.02 1.84 16 41 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.03 1.50 8.07 -2.38 -0.02 1.48 16 43 H 0.03 1.59 7.99 -2.39 -0.02 1.58 16 Total: -1.00 -71.67 332.72 1.46 -70.22 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.20 Total: 14.85 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 4.50 Total: 6.58 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.50 Total: -106.04 kcal Atomic # 8 Polarization: -30.55 SS G_CDS: -1.78 Total: -32.33 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -71.67 1.46 -70.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052242123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.024 kcal (2) G-P(sol) polarization free energy of solvation -71.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds