Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99769 * 2 1 4 4 H 1.48500 * 109.46916 * 269.99887 * 3 2 1 5 5 H 1.48497 * 109.47459 * 30.00139 * 3 2 1 6 6 H 1.48503 * 109.47057 * 150.00460 * 3 2 1 7 7 C 1.38816 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99705 * 195.46857 * 7 2 1 9 9 N 1.36934 * 119.99622 * 15.46378 * 7 2 1 10 10 C 1.47505 * 118.75762 * 26.10104 * 9 7 2 11 11 C 1.53572 * 111.02661 * 138.37371 * 10 9 7 12 12 C 1.51537 * 109.58087 * 320.01840 * 11 10 9 13 13 O 1.42154 * 108.76431 * 91.40044 * 12 11 10 14 14 C 1.38013 * 119.43736 * 272.78042 * 13 12 11 15 15 H 1.09001 * 109.46883 * 303.42616 * 14 13 12 16 16 C 1.53001 * 109.47051 * 183.43103 * 14 13 12 17 17 N 1.46500 * 109.47064 * 64.99327 * 16 14 13 18 18 C 1.34778 * 119.99341 * 180.02562 * 17 16 14 19 19 O 1.21284 * 120.00489 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.99808 * 180.02562 * 18 17 16 21 21 C 1.53773 * 113.61544 * 179.97438 * 20 18 17 22 22 C 1.53776 * 87.08387 * 89.11526 * 21 20 18 23 23 C 1.53777 * 87.08233 * 25.43222 * 22 21 20 24 24 C 1.45127 * 118.75731 * 206.09762 * 9 7 2 25 25 H 0.97003 * 120.00285 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.17359 * 17.97182 * 10 9 7 27 27 H 1.09007 * 109.11890 * 258.73896 * 10 9 7 28 28 H 1.08999 * 109.44983 * 199.98292 * 11 10 9 29 29 H 1.08997 * 109.45647 * 80.04979 * 11 10 9 30 30 H 1.08997 * 109.58802 * 331.61662 * 12 11 10 31 31 H 1.09001 * 109.59079 * 211.18788 * 12 11 10 32 32 H 1.09000 * 109.46507 * 304.99128 * 16 14 13 33 33 H 1.08998 * 109.47234 * 184.99700 * 16 14 13 34 34 H 0.96994 * 120.00289 * 359.97438 * 17 16 14 35 35 H 1.09003 * 112.90775 * 48.74165 * 20 18 17 36 36 H 1.08997 * 113.61603 * 334.55663 * 21 20 18 37 37 H 1.09005 * 113.61132 * 203.66256 * 21 20 18 38 38 H 1.09004 * 113.61420 * 139.98286 * 22 21 20 39 39 H 1.09004 * 113.61095 * 270.88268 * 22 21 20 40 40 H 1.09004 * 113.61350 * 89.11873 * 23 22 21 41 41 H 1.08999 * 113.61242 * 220.02005 * 23 22 21 42 42 H 1.08997 * 109.46381 * 149.27059 * 24 9 7 43 43 H 1.09000 * 109.45726 * 29.31172 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0609 -1.2191 0.2489 9 7 1.3627 -2.3664 -0.3173 10 6 0.1711 -2.3024 -1.1842 11 6 0.1767 -3.4422 -2.2135 12 6 1.5842 -3.6477 -2.7360 13 8 2.2338 -4.6213 -1.9293 14 6 2.8926 -4.2230 -0.7838 15 1 3.6427 -3.4740 -1.0380 16 6 3.5763 -5.4321 -0.1421 17 7 4.6225 -5.9332 -1.0368 18 6 5.3619 -7.0012 -0.6772 19 8 5.1614 -7.5471 0.3871 20 6 6.4385 -7.5165 -1.5972 21 6 7.1904 -8.7378 -1.0424 22 6 6.1194 -9.6073 -1.7218 23 6 5.9106 -8.4434 -2.7050 24 6 1.8749 -3.6166 0.2127 25 1 -0.4851 0.8400 0.0004 26 1 0.1606 -1.3469 -1.7084 27 1 -0.7240 -2.3819 -0.5672 28 1 -0.4843 -3.1865 -3.0417 29 1 -0.1726 -4.3601 -1.7407 30 1 2.1331 -2.7073 -2.6870 31 1 1.5437 -3.9962 -3.7680 32 1 2.8395 -6.2165 0.0308 33 1 4.0215 -5.1360 0.8077 34 1 4.7826 -5.4970 -1.8882 35 1 7.0965 -6.7284 -1.9636 36 1 7.1783 -8.8007 0.0457 37 1 8.1877 -8.8649 -1.4636 38 1 6.5195 -10.5071 -2.1891 39 1 5.2534 -9.8062 -1.0904 40 1 6.5580 -8.4900 -3.5807 41 1 4.8651 -8.2687 -2.9590 42 1 1.0502 -4.3141 0.3589 43 1 2.3674 -3.4317 1.1673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073506164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = -42.229706 kcal Electronic energy + Delta-G solvation = -23019.760641 eV Core-core repulsion = 19680.262214 eV Total energy + Delta-G solvation = -3339.498427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.40040 -38.99313 -37.26514 -35.25049 -34.57661 -32.14336 -31.50864 -28.86457 -26.76450 -25.79740 -25.52668 -24.95024 -22.80768 -21.28422 -20.83594 -19.63277 -19.07321 -17.04153 -17.01504 -16.22045 -16.10289 -15.64478 -15.21823 -15.01143 -14.60716 -14.33100 -13.89508 -13.70397 -13.09683 -13.00528 -12.79242 -12.58624 -12.33575 -12.12279 -12.04231 -11.41989 -11.22549 -11.12112 -10.99462 -10.89006 -10.67103 -10.56144 -10.54207 -10.25150 -9.90319 -9.78281 -9.74985 -9.66698 -8.90978 -8.83526 -8.46032 -6.78588 -5.86669 -3.31782 2.68701 3.25965 3.31862 3.39270 3.40187 4.14792 4.37695 4.41746 4.46289 4.63967 4.69026 5.08608 5.18558 5.33458 5.43698 5.46962 5.53143 5.59660 5.61735 5.68883 5.73368 5.85628 5.90907 5.94655 5.98164 6.02994 6.14901 6.21983 6.26022 6.33017 6.50699 6.61400 6.68347 6.72600 6.80464 7.32743 7.60299 7.64271 7.74051 8.19030 8.33237 8.36551 9.14323 9.78993 10.25126 11.20799 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.003788 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.504580 B = 7389.960212 C = 7848.674977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.177 4.177 12 C 0.088 3.912 13 O -0.396 6.396 14 C 0.067 3.933 15 H 0.051 0.949 16 C 0.132 3.868 17 N -0.717 5.717 18 C 0.528 3.472 19 O -0.545 6.545 20 C -0.141 4.141 21 C -0.122 4.122 22 C -0.141 4.141 23 C -0.125 4.125 24 C 0.128 3.872 25 H 0.254 0.746 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.403 0.597 35 H 0.098 0.902 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.714 -13.143 -7.190 17.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.313 5.313 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.315 6.315 14 C 0.005 3.995 15 H 0.069 0.931 16 C 0.008 3.992 17 N -0.368 5.368 18 C 0.314 3.686 19 O -0.422 6.422 20 C -0.163 4.163 21 C -0.160 4.160 22 C -0.179 4.179 23 C -0.163 4.163 24 C -0.002 4.002 25 H 0.065 0.935 26 H 0.094 0.906 27 H 0.045 0.955 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.237 0.763 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.383 -13.534 -6.434 17.681 hybrid contribution 0.374 1.618 -0.376 1.703 sum 9.757 -11.916 -6.811 16.840 Atomic orbital electron populations 1.70069 1.05250 1.25591 1.53673 1.25050 0.95297 0.98431 1.00417 0.86290 0.79153 0.83612 0.77703 1.21400 1.21671 1.20382 1.19233 0.92410 0.84877 1.43082 0.91558 1.43837 1.31494 1.01547 1.54404 1.20997 0.88441 0.95441 0.89904 1.22773 0.97078 1.01327 1.00413 1.22011 0.92790 0.92204 0.91790 1.86071 1.70685 1.37957 1.36786 1.22620 0.94858 0.93895 0.88115 0.93084 1.21428 0.88990 0.96030 0.92745 1.45961 1.36289 1.31572 1.22930 1.20045 0.82051 0.79799 0.86742 1.90676 1.69298 1.58126 1.24137 1.22428 0.97454 0.98665 0.97728 1.22743 0.97449 0.93778 1.01987 1.22880 0.99824 0.96969 0.98201 1.22823 1.01947 0.95372 0.96173 1.21413 0.95131 0.88968 0.94661 0.93540 0.90627 0.95474 0.92105 0.92391 0.92065 0.91259 0.91053 0.90269 0.76307 0.88383 0.90038 0.89684 0.91429 0.89722 0.89231 0.90902 0.93820 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.49 10.99 55.49 0.61 -24.88 16 2 C 0.01 0.19 4.89 -17.43 -0.09 0.11 16 3 Si 0.90 21.15 29.58 -169.99 -5.03 16.12 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.27 -7.02 9.46 -15.06 -0.14 -7.16 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.21 2.23 -172.02 -0.38 -14.59 16 10 C 0.18 4.11 4.70 -3.19 -0.02 4.10 16 11 C -0.18 -3.28 5.79 -27.17 -0.16 -3.44 16 12 C 0.09 1.53 6.37 36.42 0.23 1.76 16 13 O -0.40 -6.90 9.38 -26.53 -0.25 -7.15 16 14 C 0.07 1.16 2.68 -25.78 -0.07 1.09 16 15 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 16 C 0.13 2.03 5.34 -4.04 -0.02 2.01 16 17 N -0.72 -9.66 5.49 -60.29 -0.33 -9.99 16 18 C 0.53 7.31 7.08 -10.98 -0.08 7.23 16 19 O -0.54 -9.48 15.75 5.55 0.09 -9.40 16 20 C -0.14 -1.43 4.34 -90.96 -0.40 -1.83 16 21 C -0.12 -1.17 7.45 -25.93 -0.19 -1.36 16 22 C -0.14 -1.33 7.73 -25.92 -0.20 -1.53 16 23 C -0.13 -1.10 7.66 -25.92 -0.20 -1.30 16 24 C 0.13 2.61 5.12 -3.83 -0.02 2.59 16 25 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.08 1.94 6.37 -51.93 -0.33 1.61 16 27 H 0.03 0.69 8.04 -51.92 -0.42 0.27 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.08 8.01 -51.93 -0.42 0.66 16 30 H 0.06 1.18 7.40 -51.93 -0.38 0.80 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.40 4.74 8.46 -40.82 -0.35 4.40 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.93 7.43 -51.93 -0.39 0.55 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 42 H 0.04 0.89 8.11 -51.93 -0.42 0.47 16 43 H 0.06 1.14 7.98 -51.93 -0.41 0.73 16 LS Contribution 340.79 15.07 5.14 5.14 Total: -1.00 -30.09 340.79 -8.81 -38.90 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.31 Total: 3.57 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.34 Total: 2.27 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.10 Total: -49.45 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.16 Total: -16.55 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.09 -8.81 -38.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073506164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.329 kcal (2) G-P(sol) polarization free energy of solvation -30.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds