Wall clock time and date at job start Tue Mar 31 2020 05:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86806 * 119.99769 * 2 1 4 4 H 1.48500 * 109.46916 * 269.99887 * 3 2 1 5 5 H 1.48497 * 109.47459 * 30.00139 * 3 2 1 6 6 H 1.48503 * 109.47057 * 150.00460 * 3 2 1 7 7 C 1.38816 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99705 * 195.46857 * 7 2 1 9 9 N 1.36934 * 119.99622 * 15.46378 * 7 2 1 10 10 C 1.47505 * 118.75762 * 26.10104 * 9 7 2 11 11 C 1.53572 * 111.02661 * 138.37371 * 10 9 7 12 12 C 1.51537 * 109.58087 * 320.01840 * 11 10 9 13 13 O 1.42154 * 108.76431 * 91.40044 * 12 11 10 14 14 C 1.38013 * 119.43736 * 272.78042 * 13 12 11 15 15 H 1.09001 * 109.46883 * 303.42616 * 14 13 12 16 16 C 1.53001 * 109.47051 * 183.43103 * 14 13 12 17 17 N 1.46500 * 109.47064 * 64.99327 * 16 14 13 18 18 C 1.34778 * 119.99341 * 180.02562 * 17 16 14 19 19 O 1.21284 * 120.00489 * 359.97438 * 18 17 16 20 20 C 1.50703 * 119.99808 * 180.02562 * 18 17 16 21 21 C 1.53773 * 113.61544 * 179.97438 * 20 18 17 22 22 C 1.53776 * 87.08387 * 89.11526 * 21 20 18 23 23 C 1.53777 * 87.08233 * 25.43222 * 22 21 20 24 24 C 1.45127 * 118.75731 * 206.09762 * 9 7 2 25 25 H 0.97003 * 120.00285 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.17359 * 17.97182 * 10 9 7 27 27 H 1.09007 * 109.11890 * 258.73896 * 10 9 7 28 28 H 1.08999 * 109.44983 * 199.98292 * 11 10 9 29 29 H 1.08997 * 109.45647 * 80.04979 * 11 10 9 30 30 H 1.08997 * 109.58802 * 331.61662 * 12 11 10 31 31 H 1.09001 * 109.59079 * 211.18788 * 12 11 10 32 32 H 1.09000 * 109.46507 * 304.99128 * 16 14 13 33 33 H 1.08998 * 109.47234 * 184.99700 * 16 14 13 34 34 H 0.96994 * 120.00289 * 359.97438 * 17 16 14 35 35 H 1.09003 * 112.90775 * 48.74165 * 20 18 17 36 36 H 1.08997 * 113.61603 * 334.55663 * 21 20 18 37 37 H 1.09005 * 113.61132 * 203.66256 * 21 20 18 38 38 H 1.09004 * 113.61420 * 139.98286 * 22 21 20 39 39 H 1.09004 * 113.61095 * 270.88268 * 22 21 20 40 40 H 1.09004 * 113.61350 * 89.11873 * 23 22 21 41 41 H 1.08999 * 113.61242 * 220.02005 * 23 22 21 42 42 H 1.08997 * 109.46381 * 149.27059 * 24 9 7 43 43 H 1.09000 * 109.45726 * 29.31172 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0609 -1.2191 0.2489 9 7 1.3627 -2.3664 -0.3173 10 6 0.1711 -2.3024 -1.1842 11 6 0.1767 -3.4422 -2.2135 12 6 1.5842 -3.6477 -2.7360 13 8 2.2338 -4.6213 -1.9293 14 6 2.8926 -4.2230 -0.7838 15 1 3.6427 -3.4740 -1.0380 16 6 3.5763 -5.4321 -0.1421 17 7 4.6225 -5.9332 -1.0368 18 6 5.3619 -7.0012 -0.6772 19 8 5.1614 -7.5471 0.3871 20 6 6.4385 -7.5165 -1.5972 21 6 7.1904 -8.7378 -1.0424 22 6 6.1194 -9.6073 -1.7218 23 6 5.9106 -8.4434 -2.7050 24 6 1.8749 -3.6166 0.2127 25 1 -0.4851 0.8400 0.0004 26 1 0.1606 -1.3469 -1.7084 27 1 -0.7240 -2.3819 -0.5672 28 1 -0.4843 -3.1865 -3.0417 29 1 -0.1726 -4.3601 -1.7407 30 1 2.1331 -2.7073 -2.6870 31 1 1.5437 -3.9962 -3.7680 32 1 2.8395 -6.2165 0.0308 33 1 4.0215 -5.1360 0.8077 34 1 4.7826 -5.4970 -1.8882 35 1 7.0965 -6.7284 -1.9636 36 1 7.1783 -8.8007 0.0457 37 1 8.1877 -8.8649 -1.4636 38 1 6.5195 -10.5071 -2.1891 39 1 5.2534 -9.8062 -1.0904 40 1 6.5580 -8.4900 -3.5807 41 1 4.8651 -8.2687 -2.9590 42 1 1.0502 -4.3141 0.3589 43 1 2.3674 -3.4317 1.1673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073506164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:33 Heat of formation + Delta-G solvation = -61.241075 kcal Electronic energy + Delta-G solvation = -23020.585036 eV Core-core repulsion = 19680.262214 eV Total energy + Delta-G solvation = -3340.322822 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.42634 -40.45272 -38.23246 -36.98769 -35.89981 -33.65586 -33.42224 -30.36460 -28.02104 -27.16916 -26.59543 -26.35495 -24.33258 -22.32896 -22.30948 -21.35794 -20.09229 -18.87800 -17.96345 -17.65277 -17.41661 -16.88783 -16.61860 -16.39166 -16.02925 -15.59475 -15.37087 -15.17239 -14.72885 -14.32675 -14.11812 -13.79495 -13.62803 -13.24636 -13.14074 -13.02779 -12.94971 -12.78761 -12.49495 -12.42034 -12.07128 -11.91182 -11.77658 -11.50015 -11.33213 -11.28987 -11.27332 -10.80084 -10.55115 -10.28918 -10.09232 -8.74466 -7.90689 -5.38473 1.45463 1.46604 1.55312 1.62134 2.17754 2.48762 2.74653 3.24375 3.54552 3.60782 3.71277 3.80059 3.97175 4.04872 4.12534 4.20659 4.29118 4.36243 4.52093 4.56459 4.65903 4.72599 4.73265 4.82988 4.86016 4.89440 4.92867 5.05868 5.12740 5.14960 5.17409 5.21606 5.23489 5.43199 5.45660 5.52102 5.59754 5.73767 6.33989 6.58206 6.73225 7.12686 7.26223 7.84618 8.25955 9.14975 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.003788 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.504580 B = 7389.960212 C = 7848.674977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.045 4.045 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.271 4.271 8 H 0.068 0.932 9 N -0.606 5.606 10 C 0.185 3.815 11 C -0.165 4.165 12 C 0.091 3.909 13 O -0.392 6.392 14 C 0.088 3.912 15 H 0.046 0.954 16 C 0.142 3.858 17 N -0.710 5.710 18 C 0.523 3.477 19 O -0.587 6.587 20 C -0.142 4.142 21 C -0.120 4.120 22 C -0.147 4.147 23 C -0.113 4.113 24 C 0.122 3.878 25 H 0.250 0.750 26 H 0.047 0.953 27 H -0.008 1.008 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.041 0.959 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.414 0.586 35 H 0.125 0.875 36 H 0.055 0.945 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.120 0.880 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.764 -14.021 -9.323 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.241 4.241 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.401 4.401 8 H 0.086 0.914 9 N -0.328 5.328 10 C 0.061 3.939 11 C -0.204 4.204 12 C 0.016 3.984 13 O -0.311 6.311 14 C 0.027 3.973 15 H 0.064 0.936 16 C 0.017 3.983 17 N -0.361 5.361 18 C 0.311 3.689 19 O -0.467 6.467 20 C -0.163 4.163 21 C -0.158 4.158 22 C -0.184 4.184 23 C -0.151 4.151 24 C -0.006 4.006 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.010 0.990 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.127 0.873 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.250 0.750 35 H 0.143 0.857 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.139 0.861 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.460 -14.436 -8.594 20.337 hybrid contribution -0.290 1.834 0.340 1.888 sum 11.170 -12.602 -8.253 18.753 Atomic orbital electron populations 1.70231 1.06634 1.25848 1.55305 1.25782 0.96015 1.01443 1.00850 0.85292 0.78056 0.79574 0.77665 1.20896 1.22371 1.19419 1.19526 0.92618 0.85900 1.42076 0.91425 1.44037 1.31574 1.02102 1.55066 1.20776 0.86924 0.96115 0.90119 1.22631 0.98864 0.99160 0.99721 1.22082 0.91254 0.91605 0.93502 1.86100 1.70548 1.37956 1.36468 1.22258 0.93627 0.94295 0.87164 0.93600 1.21158 0.89346 0.94894 0.92878 1.45860 1.35615 1.31627 1.23010 1.20776 0.82321 0.79079 0.86697 1.90661 1.70574 1.59291 1.26186 1.22472 0.96581 0.99754 0.97521 1.22815 0.98939 0.93485 1.00570 1.22870 0.98895 0.98362 0.98277 1.22855 1.02048 0.93756 0.96420 1.21569 0.95768 0.87806 0.95416 0.94088 0.93459 0.98969 0.89631 0.92210 0.94101 0.87267 0.91893 0.90560 0.75002 0.85747 0.92625 0.86693 0.89420 0.92584 0.86132 0.91817 0.94009 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.34 10.99 21.65 0.24 -54.11 16 2 C -0.05 -2.47 4.89 84.86 0.41 -2.05 16 3 Si 0.97 43.88 29.58 68.60 2.03 45.91 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.27 -14.44 9.46 84.03 0.80 -13.65 16 8 H 0.07 3.52 7.88 -2.91 -0.02 3.49 16 9 N -0.61 -29.53 2.23 -698.16 -1.55 -31.08 16 10 C 0.19 8.81 4.70 86.38 0.41 9.22 16 11 C -0.16 -5.91 5.79 30.31 0.18 -5.74 16 12 C 0.09 2.96 6.37 71.50 0.46 3.42 16 13 O -0.39 -12.85 9.38 -117.83 -1.11 -13.96 16 14 C 0.09 2.98 2.68 31.21 0.08 3.06 16 15 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 16 C 0.14 4.28 5.34 86.38 0.46 4.74 16 17 N -0.71 -18.02 5.49 -463.05 -2.54 -20.56 16 18 C 0.52 13.89 7.08 87.66 0.62 14.51 16 19 O -0.59 -20.54 15.75 -3.04 -0.05 -20.59 16 20 C -0.14 -2.51 4.34 -11.01 -0.05 -2.55 16 21 C -0.12 -2.05 7.45 31.12 0.23 -1.82 16 22 C -0.15 -2.49 7.73 31.12 0.24 -2.25 16 23 C -0.11 -1.62 7.66 31.12 0.24 -1.38 16 24 C 0.12 5.04 5.12 87.25 0.45 5.49 16 25 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 26 H 0.05 2.49 6.37 -2.39 -0.02 2.48 16 27 H -0.01 -0.42 8.04 -2.38 -0.02 -0.44 16 28 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 29 H 0.06 2.14 8.01 -2.39 -0.02 2.12 16 30 H 0.04 1.51 7.40 -2.39 -0.02 1.50 16 31 H 0.11 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.41 8.71 8.46 -92.71 -0.78 7.92 16 35 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.05 1.25 7.43 -2.39 -0.02 1.23 16 37 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.06 1.27 8.07 -2.38 -0.02 1.25 16 40 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 42 H 0.04 1.72 8.11 -2.39 -0.02 1.70 16 43 H 0.05 2.09 7.98 -2.39 -0.02 2.07 16 Total: -1.00 -66.99 340.79 1.74 -65.24 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.20 Total: 18.14 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 4.52 Total: 11.00 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -3.86 Total: -105.75 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -1.15 Total: -34.54 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.99 1.74 -65.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073506164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.004 kcal (2) G-P(sol) polarization free energy of solvation -66.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds