Wall clock time and date at job start Tue Mar 31 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00111 * 2 1 4 4 H 1.48505 * 109.46903 * 275.55976 * 3 2 1 5 5 H 1.48496 * 109.47142 * 35.55889 * 3 2 1 6 6 H 1.48497 * 109.47089 * 155.55813 * 3 2 1 7 7 C 1.38811 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00091 * 336.56606 * 7 2 1 9 9 N 1.36946 * 119.99906 * 156.56434 * 7 2 1 10 10 C 1.43424 * 120.63445 * 320.51409 * 9 7 2 11 11 C 1.55329 * 116.24162 * 269.32992 * 10 9 7 12 12 C 1.55182 * 108.87357 * 319.45736 * 11 10 9 13 13 O 1.39638 * 110.56379 * 322.14404 * 12 11 10 14 14 C 1.42382 * 108.62064 * 101.17550 * 13 12 11 15 15 H 1.08997 * 108.61484 * 28.55517 * 14 13 12 16 16 C 1.53002 * 108.61590 * 146.46646 * 14 13 12 17 17 N 1.46503 * 109.46918 * 299.99791 * 16 14 13 18 18 C 1.34780 * 120.00015 * 180.02562 * 17 16 14 19 19 O 1.21286 * 119.99564 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00155 * 180.02562 * 18 17 16 21 21 C 1.53783 * 113.61362 * 277.49511 * 20 18 17 22 22 C 1.53775 * 87.08334 * 220.02081 * 21 20 18 23 23 C 1.53775 * 113.61377 * 179.97438 * 20 18 17 24 24 C 1.46920 * 113.79485 * 267.43625 * 14 13 12 25 25 H 0.97001 * 120.00257 * 359.97438 * 1 2 3 26 26 H 1.09004 * 108.12862 * 31.08854 * 10 9 7 27 27 H 1.08991 * 108.12858 * 147.77854 * 10 9 7 28 28 H 1.09010 * 109.56754 * 199.64100 * 11 10 9 29 29 H 1.09001 * 109.57289 * 79.28103 * 11 10 9 30 30 H 1.09001 * 109.25809 * 201.86871 * 12 11 10 31 31 H 1.09002 * 109.25857 * 82.42934 * 12 11 10 32 32 H 1.08996 * 109.47442 * 59.99807 * 16 14 13 33 33 H 1.09003 * 109.46604 * 180.02562 * 16 14 13 34 34 H 0.96999 * 120.00496 * 0.02562 * 17 16 14 35 35 H 1.08994 * 112.84686 * 48.79855 * 20 18 17 36 36 H 1.09010 * 113.61118 * 334.57070 * 21 20 18 37 37 H 1.08997 * 113.61387 * 105.46779 * 21 20 18 38 38 H 1.09000 * 113.61385 * 270.88613 * 22 21 20 39 39 H 1.08992 * 113.69636 * 139.98847 * 22 21 20 40 40 H 1.08999 * 113.61505 * 254.52853 * 23 20 18 41 41 H 1.09007 * 113.61802 * 25.34854 * 23 20 18 42 42 H 1.09008 * 109.98642 * 176.12217 * 24 14 13 43 43 H 1.08996 * 109.99497 * 297.49840 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3802 2.1142 -1.3936 5 1 1.5114 2.6159 0.8142 6 1 3.6015 1.4091 0.5793 7 6 2.0102 -1.2022 -0.0005 8 1 1.5371 -2.0990 0.3710 9 7 3.2949 -1.2509 -0.4723 10 6 3.6763 -0.4997 -1.6330 11 6 3.5353 -1.2268 -2.9984 12 6 4.0022 -2.6976 -2.8344 13 8 5.1032 -2.7702 -1.9787 14 6 4.6550 -3.1963 -0.6962 15 1 3.7654 -3.8128 -0.8257 16 6 5.7505 -4.0504 -0.0548 17 7 6.0199 -5.2154 -0.9013 18 6 6.9540 -6.1144 -0.5330 19 8 7.5719 -5.9587 0.4990 20 6 7.2316 -7.3125 -1.4040 21 6 6.2451 -8.4724 -1.1887 22 6 7.4513 -9.4179 -1.3141 23 6 8.3232 -8.2404 -0.8455 24 6 4.3312 -2.0911 0.2160 25 1 -0.4850 0.8400 0.0004 26 1 3.0689 0.4048 -1.6663 27 1 4.7181 -0.2015 -1.5169 28 1 4.1553 -0.7278 -3.7434 29 1 2.4929 -1.2078 -3.3164 30 1 4.2781 -3.0981 -3.8100 31 1 3.1859 -3.2899 -2.4211 32 1 6.6596 -3.4580 0.0480 33 1 5.4211 -4.3848 0.9289 34 1 5.5260 -5.3397 -1.7268 35 1 7.3764 -7.0495 -2.4518 36 1 5.7868 -8.4780 -0.1996 37 1 5.5183 -8.5826 -1.9935 38 1 7.6555 -9.7317 -2.3377 39 1 7.4293 -10.2515 -0.6122 40 1 9.2737 -8.1635 -1.3734 41 1 8.4345 -8.1816 0.2373 42 1 3.9313 -2.4844 1.1507 43 1 5.2232 -1.4961 0.4120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073506165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:36 Heat of formation + Delta-G solvation = -33.404167 kcal Electronic energy + Delta-G solvation = -23018.346546 eV Core-core repulsion = 19679.230823 eV Total energy + Delta-G solvation = -3339.115723 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.36521 -39.39009 -37.51133 -35.33483 -34.76655 -32.27583 -31.77831 -29.15549 -27.30070 -25.88590 -25.69392 -25.04274 -22.54366 -21.24319 -20.85399 -20.10095 -19.46268 -17.61261 -17.06231 -16.28272 -15.89036 -15.68621 -15.65572 -14.93289 -14.69632 -14.48249 -14.06393 -13.79950 -13.17524 -13.06434 -12.81689 -12.68567 -12.50299 -12.44157 -12.15089 -11.92316 -11.63735 -11.41078 -11.23810 -10.80365 -10.78781 -10.64245 -10.54089 -10.41882 -10.22166 -9.77047 -9.74840 -9.61735 -9.05293 -8.97721 -8.53751 -6.86695 -6.08913 -3.53429 2.64288 3.24546 3.29337 3.43780 3.51126 4.22307 4.28244 4.37004 4.47072 4.52809 4.56911 4.74419 5.01022 5.16847 5.29727 5.35302 5.36590 5.42526 5.53832 5.57995 5.61592 5.70310 5.71927 5.77577 5.83403 5.85850 5.97312 6.02815 6.13647 6.17345 6.23472 6.46155 6.49698 6.56199 6.59064 6.76497 6.82971 7.55874 7.61052 7.99781 8.25553 8.27360 8.91441 9.62269 10.06975 11.06006 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033877 B = 0.003654 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.309314 B = 7660.711745 C = 7774.609833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.043 3.957 3 Si 0.879 3.121 4 H -0.285 1.285 5 H -0.300 1.300 6 H -0.269 1.269 7 C -0.276 4.276 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.151 3.849 11 C -0.169 4.169 12 C 0.065 3.935 13 O -0.356 6.356 14 C 0.063 3.937 15 H 0.069 0.931 16 C 0.115 3.885 17 N -0.718 5.718 18 C 0.519 3.481 19 O -0.546 6.546 20 C -0.139 4.139 21 C -0.124 4.124 22 C -0.142 4.142 23 C -0.118 4.118 24 C 0.112 3.888 25 H 0.264 0.736 26 H 0.043 0.957 27 H 0.032 0.968 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.401 0.599 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.142 -14.400 -5.969 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.159 4.159 3 Si 0.708 3.292 4 H -0.213 1.213 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.404 4.404 8 H 0.094 0.906 9 N -0.321 5.321 10 C 0.024 3.976 11 C -0.210 4.210 12 C -0.012 4.012 13 O -0.274 6.274 14 C 0.003 3.997 15 H 0.087 0.913 16 C -0.010 4.010 17 N -0.369 5.369 18 C 0.305 3.695 19 O -0.424 6.424 20 C -0.161 4.161 21 C -0.162 4.162 22 C -0.180 4.180 23 C -0.156 4.156 24 C -0.013 4.013 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.235 0.765 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.596 -14.112 -5.216 19.622 hybrid contribution -0.221 1.113 -0.539 1.256 sum 12.375 -12.999 -5.754 18.847 Atomic orbital electron populations 1.69881 1.06094 1.26969 1.50518 1.25516 0.95022 0.97954 0.97370 0.86886 0.80765 0.84432 0.77075 1.21311 1.22822 1.19346 1.18701 0.86544 0.94374 1.40777 0.90636 1.44104 1.07373 1.55243 1.25386 1.20625 0.97376 0.93691 0.85923 1.23503 1.00734 0.96654 1.00075 1.22422 0.88605 0.97136 0.93055 1.87602 1.30954 1.88560 1.20262 1.21983 0.95179 0.96198 0.86300 0.91325 1.21709 0.99394 0.85954 0.93919 1.45951 1.40225 1.24358 1.26349 1.20498 0.79152 0.83460 0.86367 1.90680 1.49681 1.76421 1.25626 1.22796 1.00153 0.92686 1.00431 1.22821 0.96378 0.94084 1.02875 1.22837 0.96322 0.97033 1.01789 1.22804 0.96534 0.93784 1.02444 1.21052 0.92959 0.92285 0.94966 0.92568 0.93901 0.94964 0.92639 0.91553 0.92146 0.92385 0.90911 0.90389 0.76459 0.87057 0.89619 0.90648 0.89959 0.91032 0.91148 0.88706 0.90053 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.97 55.49 0.78 -25.82 16 2 C 0.04 1.21 5.27 -17.43 -0.09 1.12 16 3 Si 0.88 22.09 25.24 -169.99 -4.29 17.80 16 4 H -0.29 -7.02 6.74 56.52 0.38 -6.64 16 5 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.28 -7.42 9.93 -15.06 -0.15 -7.57 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 N -0.60 -13.75 2.16 -174.50 -0.38 -14.13 16 10 C 0.15 3.30 4.30 -4.43 -0.02 3.28 16 11 C -0.17 -3.10 6.75 -24.34 -0.16 -3.26 16 12 C 0.07 1.05 6.38 38.31 0.24 1.29 16 13 O -0.36 -5.85 9.53 -31.93 -0.30 -6.16 16 14 C 0.06 1.01 2.10 -29.64 -0.06 0.94 16 15 H 0.07 1.12 6.77 -51.93 -0.35 0.77 16 16 C 0.11 1.63 5.23 -4.04 -0.02 1.61 16 17 N -0.72 -8.96 5.43 -60.29 -0.33 -9.29 16 18 C 0.52 6.80 7.36 -10.98 -0.08 6.72 16 19 O -0.55 -9.24 15.90 5.55 0.09 -9.15 16 20 C -0.14 -1.31 4.15 -90.96 -0.38 -1.68 16 21 C -0.12 -0.98 7.63 -25.92 -0.20 -1.18 16 22 C -0.14 -1.01 8.08 -25.90 -0.21 -1.22 16 23 C -0.12 -1.06 7.41 -25.90 -0.19 -1.26 16 24 C 0.11 2.12 5.57 -4.93 -0.03 2.10 16 25 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 26 H 0.04 1.03 3.45 -51.93 -0.18 0.85 16 27 H 0.03 0.68 7.98 -51.93 -0.41 0.26 16 28 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.97 6.66 -51.93 -0.35 0.62 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.40 4.28 8.33 -40.82 -0.34 3.94 16 35 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.77 8.09 -51.92 -0.42 0.34 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.02 7.43 -51.92 -0.39 0.64 16 42 H 0.08 1.50 8.00 -51.92 -0.42 1.08 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -31.53 335.97 -7.80 -39.34 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -7.08 Total: 1.44 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -1.35 Total: 0.90 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.07 Total: -49.24 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.22 Total: -15.31 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.29 Total: 17.80 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.53 -7.80 -39.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073506165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.931 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds