Wall clock time and date at job start Tue Mar 31 2020 05:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00111 * 2 1 4 4 H 1.48505 * 109.46903 * 275.55976 * 3 2 1 5 5 H 1.48496 * 109.47142 * 35.55889 * 3 2 1 6 6 H 1.48497 * 109.47089 * 155.55813 * 3 2 1 7 7 C 1.38811 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00091 * 336.56606 * 7 2 1 9 9 N 1.36946 * 119.99906 * 156.56434 * 7 2 1 10 10 C 1.43424 * 120.63445 * 320.51409 * 9 7 2 11 11 C 1.55329 * 116.24162 * 269.32992 * 10 9 7 12 12 C 1.55182 * 108.87357 * 319.45736 * 11 10 9 13 13 O 1.39638 * 110.56379 * 322.14404 * 12 11 10 14 14 C 1.42382 * 108.62064 * 101.17550 * 13 12 11 15 15 H 1.08997 * 108.61484 * 28.55517 * 14 13 12 16 16 C 1.53002 * 108.61590 * 146.46646 * 14 13 12 17 17 N 1.46503 * 109.46918 * 299.99791 * 16 14 13 18 18 C 1.34780 * 120.00015 * 180.02562 * 17 16 14 19 19 O 1.21286 * 119.99564 * 359.97438 * 18 17 16 20 20 C 1.50701 * 120.00155 * 180.02562 * 18 17 16 21 21 C 1.53783 * 113.61362 * 277.49511 * 20 18 17 22 22 C 1.53775 * 87.08334 * 220.02081 * 21 20 18 23 23 C 1.53775 * 113.61377 * 179.97438 * 20 18 17 24 24 C 1.46920 * 113.79485 * 267.43625 * 14 13 12 25 25 H 0.97001 * 120.00257 * 359.97438 * 1 2 3 26 26 H 1.09004 * 108.12862 * 31.08854 * 10 9 7 27 27 H 1.08991 * 108.12858 * 147.77854 * 10 9 7 28 28 H 1.09010 * 109.56754 * 199.64100 * 11 10 9 29 29 H 1.09001 * 109.57289 * 79.28103 * 11 10 9 30 30 H 1.09001 * 109.25809 * 201.86871 * 12 11 10 31 31 H 1.09002 * 109.25857 * 82.42934 * 12 11 10 32 32 H 1.08996 * 109.47442 * 59.99807 * 16 14 13 33 33 H 1.09003 * 109.46604 * 180.02562 * 16 14 13 34 34 H 0.96999 * 120.00496 * 0.02562 * 17 16 14 35 35 H 1.08994 * 112.84686 * 48.79855 * 20 18 17 36 36 H 1.09010 * 113.61118 * 334.57070 * 21 20 18 37 37 H 1.08997 * 113.61387 * 105.46779 * 21 20 18 38 38 H 1.09000 * 113.61385 * 270.88613 * 22 21 20 39 39 H 1.08992 * 113.69636 * 139.98847 * 22 21 20 40 40 H 1.08999 * 113.61505 * 254.52853 * 23 20 18 41 41 H 1.09007 * 113.61802 * 25.34854 * 23 20 18 42 42 H 1.09008 * 109.98642 * 176.12217 * 24 14 13 43 43 H 1.08996 * 109.99497 * 297.49840 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3802 2.1142 -1.3936 5 1 1.5114 2.6159 0.8142 6 1 3.6015 1.4091 0.5793 7 6 2.0102 -1.2022 -0.0005 8 1 1.5371 -2.0990 0.3710 9 7 3.2949 -1.2509 -0.4723 10 6 3.6763 -0.4997 -1.6330 11 6 3.5353 -1.2268 -2.9984 12 6 4.0022 -2.6976 -2.8344 13 8 5.1032 -2.7702 -1.9787 14 6 4.6550 -3.1963 -0.6962 15 1 3.7654 -3.8128 -0.8257 16 6 5.7505 -4.0504 -0.0548 17 7 6.0199 -5.2154 -0.9013 18 6 6.9540 -6.1144 -0.5330 19 8 7.5719 -5.9587 0.4990 20 6 7.2316 -7.3125 -1.4040 21 6 6.2451 -8.4724 -1.1887 22 6 7.4513 -9.4179 -1.3141 23 6 8.3232 -8.2404 -0.8455 24 6 4.3312 -2.0911 0.2160 25 1 -0.4850 0.8400 0.0004 26 1 3.0689 0.4048 -1.6663 27 1 4.7181 -0.2015 -1.5169 28 1 4.1553 -0.7278 -3.7434 29 1 2.4929 -1.2078 -3.3164 30 1 4.2781 -3.0981 -3.8100 31 1 3.1859 -3.2899 -2.4211 32 1 6.6596 -3.4580 0.0480 33 1 5.4211 -4.3848 0.9289 34 1 5.5260 -5.3397 -1.7268 35 1 7.3764 -7.0495 -2.4518 36 1 5.7868 -8.4780 -0.1996 37 1 5.5183 -8.5826 -1.9935 38 1 7.6555 -9.7317 -2.3377 39 1 7.4293 -10.2515 -0.6122 40 1 9.2737 -8.1635 -1.3734 41 1 8.4345 -8.1816 0.2373 42 1 3.9313 -2.4844 1.1507 43 1 5.2232 -1.4961 0.4120 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073506165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:36 Heat of formation + Delta-G solvation = -54.915393 kcal Electronic energy + Delta-G solvation = -23019.279343 eV Core-core repulsion = 19679.230823 eV Total energy + Delta-G solvation = -3340.048520 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.39457 -40.66410 -38.37767 -37.05348 -35.97933 -33.88088 -33.56720 -30.64042 -28.41705 -27.25158 -26.59087 -26.35705 -24.07186 -22.56744 -21.96740 -21.66523 -20.24574 -18.89080 -18.50789 -17.60322 -17.45119 -17.22114 -16.46608 -16.21229 -16.05780 -15.73248 -15.61697 -15.02606 -14.84362 -14.32756 -14.14086 -13.95412 -13.79175 -13.68843 -13.37036 -13.24263 -12.89588 -12.77446 -12.65321 -12.34858 -12.12056 -12.03538 -11.75752 -11.64578 -11.40886 -11.33536 -11.26438 -10.77905 -10.59634 -10.42631 -10.08954 -8.77020 -8.25439 -5.65835 1.28106 1.38365 1.49525 1.63978 2.23223 2.38655 2.91232 3.01157 3.19818 3.57771 3.69662 3.82475 3.94584 3.95606 4.01311 4.20221 4.26056 4.26974 4.39015 4.53796 4.56277 4.66115 4.71170 4.72932 4.80472 4.82493 4.89612 4.96520 5.06080 5.07209 5.09949 5.11842 5.15842 5.21653 5.26024 5.41699 5.56291 5.91203 6.11957 6.28794 6.58292 6.94407 7.27085 7.56432 8.04495 8.93578 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.033877 B = 0.003654 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.309314 B = 7660.711745 C = 7774.609833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.008 4.008 3 Si 0.937 3.063 4 H -0.278 1.278 5 H -0.306 1.306 6 H -0.266 1.266 7 C -0.260 4.260 8 H 0.047 0.953 9 N -0.611 5.611 10 C 0.143 3.857 11 C -0.167 4.167 12 C 0.069 3.931 13 O -0.355 6.355 14 C 0.076 3.924 15 H 0.068 0.932 16 C 0.125 3.875 17 N -0.710 5.710 18 C 0.515 3.485 19 O -0.590 6.590 20 C -0.136 4.136 21 C -0.122 4.122 22 C -0.130 4.130 23 C -0.126 4.126 24 C 0.110 3.890 25 H 0.264 0.736 26 H 0.019 0.981 27 H 0.041 0.959 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.413 0.587 35 H 0.137 0.863 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.841 -15.549 -7.932 22.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.206 4.206 3 Si 0.766 3.234 4 H -0.205 1.205 5 H -0.235 1.235 6 H -0.190 1.190 7 C -0.389 4.389 8 H 0.064 0.936 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.207 4.207 12 C -0.009 4.009 13 O -0.273 6.273 14 C 0.016 3.984 15 H 0.086 0.914 16 C 0.000 4.000 17 N -0.361 5.361 18 C 0.303 3.697 19 O -0.471 6.471 20 C -0.157 4.157 21 C -0.160 4.160 22 C -0.167 4.167 23 C -0.164 4.164 24 C -0.014 4.014 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.070 0.930 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.249 0.751 35 H 0.155 0.845 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.122 0.878 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.321 -15.276 -7.215 22.148 hybrid contribution -0.715 1.417 0.081 1.589 sum 13.606 -13.860 -7.135 20.691 Atomic orbital electron populations 1.69982 1.07505 1.27540 1.53248 1.26044 0.95498 1.00818 0.98218 0.85939 0.79359 0.80891 0.77192 1.20497 1.23450 1.19028 1.18605 0.88097 0.93160 1.39059 0.93564 1.44196 1.06827 1.55919 1.26452 1.20722 0.97151 0.93287 0.87213 1.23458 1.00659 0.98312 0.98302 1.22460 0.88332 0.95371 0.94695 1.87614 1.31009 1.88513 1.20160 1.21687 0.95764 0.95066 0.85856 0.91439 1.21438 0.98182 0.86341 0.94029 1.45873 1.40200 1.23595 1.26469 1.21218 0.78239 0.84069 0.86159 1.90663 1.51260 1.77491 1.27705 1.22944 1.00871 0.91078 1.00825 1.22829 0.96886 0.93443 1.02794 1.22826 0.94680 0.96237 1.02983 1.22821 0.97395 0.95095 1.01097 1.21204 0.91931 0.92661 0.95582 0.92676 0.96314 0.94054 0.90131 0.92974 0.88323 0.93334 0.91791 0.90543 0.75081 0.84502 0.91147 0.88656 0.87844 0.90681 0.90235 0.91222 0.90108 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.23 13.97 21.65 0.30 -56.93 16 2 C -0.01 -0.46 5.27 84.86 0.45 -0.01 16 3 Si 0.94 46.17 25.24 68.60 1.73 47.90 16 4 H -0.28 -13.20 6.74 99.48 0.67 -12.53 16 5 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 6 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.26 -14.16 9.93 84.03 0.83 -13.33 16 8 H 0.05 2.76 8.06 -2.91 -0.02 2.73 16 9 N -0.61 -27.67 2.16 -706.01 -1.52 -29.19 16 10 C 0.14 6.03 4.30 87.75 0.38 6.41 16 11 C -0.17 -5.73 6.75 32.14 0.22 -5.51 16 12 C 0.07 1.99 6.38 72.73 0.46 2.46 16 13 O -0.36 -10.64 9.53 -137.16 -1.31 -11.95 16 14 C 0.08 2.29 2.10 28.71 0.06 2.36 16 15 H 0.07 2.10 6.77 -2.39 -0.02 2.08 16 16 C 0.13 3.40 5.23 86.38 0.45 3.86 16 17 N -0.71 -16.34 5.43 -463.04 -2.52 -18.85 16 18 C 0.51 12.80 7.36 87.66 0.64 13.44 16 19 O -0.59 -19.89 15.90 -3.05 -0.05 -19.94 16 20 C -0.14 -2.22 4.15 -11.01 -0.05 -2.27 16 21 C -0.12 -1.63 7.63 31.12 0.24 -1.39 16 22 C -0.13 -1.48 8.08 31.13 0.25 -1.22 16 23 C -0.13 -2.08 7.41 31.13 0.23 -1.85 16 24 C 0.11 4.06 5.57 83.79 0.47 4.53 16 25 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.02 0.88 3.45 -2.38 -0.01 0.87 16 27 H 0.04 1.65 7.98 -2.39 -0.02 1.63 16 28 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 29 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 1.51 6.66 -2.39 -0.02 1.49 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.41 7.60 8.33 -92.71 -0.77 6.83 16 35 H 0.14 1.56 8.14 -2.39 -0.02 1.55 16 36 H 0.07 1.17 8.09 -2.38 -0.02 1.15 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 1.51 7.43 -2.38 -0.02 1.49 16 42 H 0.08 2.95 8.00 -2.38 -0.02 2.93 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -69.04 335.97 1.47 -67.57 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.19 Total: 13.91 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 4.64 Total: 7.47 kcal Atomic # 7 Polarization: -101.23 SS G_CDS: -3.74 Total: -104.97 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.36 Total: -31.89 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 1.73 Total: 47.90 kcal Total: -69.04 1.47 -67.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073506165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.658 kcal (2) G-P(sol) polarization free energy of solvation -69.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds