Wall clock time and date at job start Tue Mar 31 2020 05:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99962 * 2 1 4 4 H 1.48503 * 109.47376 * 240.00142 * 3 2 1 5 5 H 1.48500 * 109.47231 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47083 * 120.00442 * 3 2 1 7 7 C 1.37873 * 120.00001 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00330 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47544 * 180.02562 * 9 7 2 11 11 N 1.46493 * 109.47417 * 180.02562 * 10 9 7 12 12 C 1.34776 * 120.00112 * 179.72370 * 11 10 9 13 13 O 1.21584 * 120.00018 * 359.97438 * 12 11 10 14 14 N 1.34785 * 119.99840 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99793 * 175.64992 * 14 12 11 16 16 C 1.53003 * 109.54580 * 295.03927 * 15 14 12 17 17 C 1.52998 * 117.49722 * 1.94321 * 16 15 14 18 18 C 1.52990 * 117.49709 * 293.28103 * 16 15 14 19 19 C 1.53178 * 109.54292 * 174.76851 * 15 14 12 20 20 C 1.53087 * 109.16616 * 297.11962 * 19 15 14 21 21 O 1.42903 * 109.41372 * 302.38610 * 20 19 15 22 22 C 1.42910 * 114.09640 * 61.15767 * 21 20 19 23 23 C 1.53087 * 109.41652 * 298.84475 * 22 21 20 24 24 H 0.97002 * 119.99771 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46905 * 59.99968 * 9 7 2 26 26 H 1.08998 * 109.46705 * 300.00163 * 9 7 2 27 27 H 1.08996 * 109.47588 * 59.99597 * 10 9 7 28 28 H 1.09010 * 109.47143 * 300.00169 * 10 9 7 29 29 H 0.97000 * 120.00055 * 359.97438 * 11 10 9 30 30 H 0.96999 * 120.00124 * 355.65038 * 14 12 11 31 31 H 1.09003 * 115.54816 * 147.60668 * 16 15 14 32 32 H 1.09001 * 117.50134 * 359.97438 * 17 16 15 33 33 H 1.09002 * 117.49754 * 145.02147 * 17 16 15 34 34 H 1.09001 * 117.50086 * 214.97611 * 18 16 15 35 35 H 1.08993 * 117.50212 * 359.97438 * 18 16 15 36 36 H 1.09002 * 109.51762 * 57.02211 * 19 15 14 37 37 H 1.08998 * 109.52038 * 177.20554 * 19 15 14 38 38 H 1.08997 * 109.48084 * 182.40763 * 20 19 15 39 39 H 1.08998 * 109.48470 * 62.37167 * 20 19 15 40 40 H 1.09003 * 109.48119 * 178.85743 * 22 21 20 41 41 H 1.09003 * 109.48558 * 58.83390 * 22 21 20 42 42 H 1.09004 * 109.51705 * 297.70167 * 23 22 21 43 43 H 1.08997 * 109.57235 * 177.54284 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5128 -4.9308 -0.0012 12 6 2.1867 -6.0979 -0.0069 13 8 3.4026 -6.0979 -0.0120 14 7 1.5128 -7.2652 -0.0069 15 6 2.2417 -8.5318 -0.1094 16 6 2.9327 -8.6160 -1.4719 17 6 2.7905 -7.4168 -2.4114 18 6 2.0412 -8.7175 -2.7110 19 6 1.2630 -9.7001 0.0440 20 6 0.6354 -9.6502 1.4394 21 8 1.6677 -9.6959 2.4264 22 6 2.5856 -8.6025 2.3617 23 6 3.2915 -8.6103 1.0033 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 2.8720 -3.6044 0.8894 28 1 2.8720 -3.6043 -0.8906 29 1 0.5428 -4.9308 -0.0011 30 1 0.5452 -7.2666 0.0609 31 1 3.8786 -9.1574 -1.4866 32 1 2.2043 -6.5681 -2.0590 33 1 3.6426 -7.1697 -3.0445 34 1 2.4006 -9.3255 -3.5412 35 1 0.9624 -8.7248 -2.5556 36 1 0.4803 -9.6209 -0.7105 37 1 1.7973 -10.6418 -0.0817 38 1 -0.0299 -10.5037 1.5695 39 1 0.0675 -8.7263 1.5498 40 1 3.3252 -8.7012 3.1564 41 1 2.0435 -7.6648 2.4843 42 1 3.8668 -9.5300 0.8972 43 1 3.9602 -7.7523 0.9344 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116615136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:29 Heat of formation + Delta-G solvation = -52.227293 kcal Electronic energy + Delta-G solvation = -23280.322435 eV Core-core repulsion = 19940.390480 eV Total energy + Delta-G solvation = -3339.931955 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.04325 -38.68758 -37.15178 -34.80433 -34.02536 -32.89371 -31.50763 -31.26019 -29.19815 -25.68993 -24.60443 -23.96406 -22.15067 -21.46098 -21.11232 -20.68660 -19.25226 -18.10592 -16.79885 -16.34223 -16.10401 -15.96311 -15.51301 -14.94303 -14.67085 -14.53447 -14.29401 -13.89542 -13.56360 -13.26300 -12.99967 -12.59849 -12.51653 -12.26615 -11.88988 -11.50094 -11.30244 -11.19812 -11.10400 -11.01261 -10.65339 -10.60322 -10.33852 -10.27278 -10.07120 -9.83019 -9.61994 -9.41598 -9.19975 -8.93822 -8.48814 -8.26071 -6.09597 -4.12346 2.99122 3.31071 3.34945 3.38547 3.56905 3.75622 3.79069 4.38487 4.46365 4.57261 4.65907 4.68795 4.85276 5.00675 5.01794 5.18692 5.21247 5.27582 5.37128 5.43316 5.52153 5.58929 5.66303 5.73760 5.87354 5.93925 6.02705 6.10270 6.22144 6.26281 6.32396 6.38847 6.70888 6.77345 7.00883 7.09478 7.23396 7.55978 7.62481 7.89372 8.25477 8.43393 8.92541 9.01783 9.52497 11.02018 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.025451 B = 0.003669 C = 0.003482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.874757 B = 7628.672984 C = 8039.194660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.142 3.858 11 N -0.742 5.742 12 C 0.702 3.298 13 O -0.585 6.585 14 N -0.750 5.750 15 C 0.230 3.770 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.184 4.184 19 C -0.153 4.153 20 C 0.061 3.939 21 O -0.385 6.385 22 C 0.065 3.935 23 C -0.168 4.168 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.391 0.609 30 H 0.391 0.609 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 -20.936 -0.725 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.019 3.981 11 N -0.395 5.395 12 C 0.403 3.597 13 O -0.463 6.463 14 N -0.407 5.407 15 C 0.143 3.857 16 C -0.171 4.171 17 C -0.191 4.191 18 C -0.221 4.221 19 C -0.191 4.191 20 C -0.016 4.016 21 O -0.304 6.304 22 C -0.012 4.012 23 C -0.207 4.207 24 H 0.072 0.928 25 H 0.039 0.961 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.224 0.776 30 H 0.225 0.775 31 H 0.124 0.876 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.151 -20.915 -0.597 20.955 hybrid contribution -0.540 1.207 -0.299 1.356 sum 0.611 -19.708 -0.896 19.737 Atomic orbital electron populations 1.69945 1.06097 1.26961 1.50364 1.24985 0.94878 0.99377 0.94981 0.86579 0.79525 0.82673 0.78793 1.20103 1.21254 1.20105 1.21009 0.93208 0.90381 1.51398 0.92307 1.19312 0.94251 0.91123 0.97724 1.21558 0.95565 0.80416 1.00553 1.45625 1.09798 1.05441 1.78679 1.15930 0.85818 0.80265 0.77666 1.90828 1.11487 1.86230 1.57799 1.45409 1.09384 1.04645 1.81218 1.19480 0.91147 0.81944 0.93163 1.22555 1.00312 1.04043 0.90163 1.22934 1.02412 0.92056 1.01652 1.22971 0.98167 1.02012 0.98970 1.22454 0.99633 0.98782 0.98270 1.22549 0.89936 1.01859 0.87270 1.87909 1.41007 1.47488 1.54005 1.22549 0.91914 0.89354 0.97351 1.22715 0.99163 1.04903 0.93878 0.92811 0.96051 0.96066 0.92867 0.92836 0.77586 0.77550 0.87626 0.88369 0.89346 0.89258 0.89219 0.90262 0.89397 0.88879 0.93242 0.89048 0.93044 0.91011 0.86915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 8 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 9 C 0.01 0.33 5.09 -27.89 -0.14 0.19 16 10 C 0.14 2.97 5.61 -4.05 -0.02 2.95 16 11 N -0.74 -12.52 5.56 -65.23 -0.36 -12.88 16 12 C 0.70 11.27 5.58 -86.91 -0.49 10.78 16 13 O -0.59 -11.23 12.63 5.29 0.07 -11.16 16 14 N -0.75 -8.94 3.58 -52.24 -0.19 -9.12 16 15 C 0.23 2.53 0.49 -131.63 -0.06 2.46 16 16 C -0.15 -1.74 4.88 -90.62 -0.44 -2.19 16 17 C -0.15 -2.04 8.56 -26.69 -0.23 -2.27 16 18 C -0.18 -1.88 9.72 -26.70 -0.26 -2.14 16 19 C -0.15 -1.30 4.65 -26.59 -0.12 -1.42 16 20 C 0.06 0.54 6.67 37.20 0.25 0.79 16 21 O -0.39 -4.50 10.77 -35.23 -0.38 -4.88 16 22 C 0.06 0.77 6.68 37.20 0.25 1.02 16 23 C -0.17 -2.05 4.64 -26.59 -0.12 -2.17 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.05 1.17 8.14 -51.92 -0.42 0.75 16 29 H 0.39 5.78 8.49 -40.82 -0.35 5.43 16 30 H 0.39 3.81 7.72 -40.82 -0.32 3.50 16 31 H 0.11 1.19 8.06 -51.93 -0.42 0.77 16 32 H 0.10 1.51 5.18 -51.93 -0.27 1.24 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.84 7.25 -51.93 -0.38 0.47 16 36 H 0.08 0.57 7.06 -51.93 -0.37 0.20 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.43 7.21 -51.93 -0.37 0.05 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 0.67 7.75 -51.93 -0.40 0.27 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.11 1.71 5.62 -51.93 -0.29 1.42 16 LS Contribution 335.62 15.07 5.06 5.06 Total: -1.00 -30.92 335.62 -8.82 -39.74 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -6.93 Total: 7.38 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.81 Total: -5.13 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.19 Total: -47.31 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.31 Total: -16.04 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.92 -8.82 -39.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116615136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.486 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds