Wall clock time and date at job start Tue Mar 31 2020 06:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00014 * 2 1 4 4 H 1.48498 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47265 * 299.99826 * 3 2 1 6 6 H 1.48497 * 109.47301 * 59.99674 * 3 2 1 7 7 C 1.37874 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00251 * 359.97438 * 7 2 1 10 10 O 1.42906 * 109.47111 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99774 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47064 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47356 * 62.22274 * 12 11 10 14 14 C 1.46856 * 110.99832 * 176.37338 * 13 12 11 15 15 C 1.53196 * 109.41783 * 173.46116 * 14 13 12 16 16 C 1.52247 * 109.35742 * 57.86768 * 15 14 13 17 17 C 1.53754 * 110.75647 * 67.81780 * 16 15 14 18 18 N 1.46937 * 105.32237 * 93.52006 * 17 16 15 19 19 C 1.34500 * 111.29553 * 16.62734 * 18 17 16 20 20 O 1.21281 * 124.94244 * 179.31983 * 19 18 17 21 21 C 1.51454 * 110.11325 * 359.19565 * 19 18 17 22 22 C 1.52246 * 111.06522 * 304.30335 * 16 15 14 23 23 C 1.46859 * 110.99559 * 51.98885 * 13 12 11 24 24 H 0.97000 * 119.99916 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47130 * 60.00457 * 9 7 2 26 26 H 1.08993 * 109.47526 * 299.99916 * 9 7 2 27 27 H 1.08997 * 109.47380 * 60.00359 * 11 10 9 28 28 H 1.09002 * 109.47327 * 300.00003 * 11 10 9 29 29 H 1.09010 * 109.46676 * 302.22659 * 12 11 10 30 30 H 1.08998 * 109.46999 * 182.22689 * 12 11 10 31 31 H 1.08994 * 109.47946 * 53.47693 * 14 13 12 32 32 H 1.08998 * 109.47788 * 293.44186 * 14 13 12 33 33 H 1.09004 * 109.49275 * 297.90312 * 15 14 13 34 34 H 1.08994 * 109.49456 * 177.83054 * 15 14 13 35 35 H 1.09003 * 110.27020 * 334.55325 * 17 16 15 36 36 H 1.08998 * 110.27036 * 212.48776 * 17 16 15 37 37 H 0.96995 * 124.35079 * 196.35944 * 18 17 16 38 38 H 1.09004 * 110.67114 * 226.00456 * 21 19 18 39 39 H 1.09000 * 110.30405 * 103.32621 * 21 19 18 40 40 H 1.08997 * 109.49395 * 175.65763 * 22 16 15 41 41 H 1.08997 * 109.49213 * 295.73455 * 22 16 15 42 42 H 1.08998 * 109.48194 * 306.52485 * 23 13 12 43 43 H 1.08993 * 109.48474 * 66.55924 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 8 2.1797 -3.5853 0.0015 11 6 1.5651 -4.8754 0.0019 12 6 2.6480 -5.9562 0.0023 13 7 3.4506 -5.8449 1.2276 14 6 4.4468 -6.9212 1.3037 15 6 5.3670 -6.6795 2.5044 16 6 4.5310 -6.6091 3.7749 17 6 3.9163 -7.9806 4.0992 18 7 4.8637 -8.6227 5.0206 19 6 5.7150 -7.7256 5.5494 20 8 6.5899 -7.9852 6.3482 21 6 5.4239 -6.3446 4.9999 22 6 3.4475 -5.5459 3.6588 23 6 2.5922 -5.8261 2.4190 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 0.9446 -4.9826 -0.8877 28 1 0.9453 -4.9823 0.8922 29 1 3.2923 -5.8252 -0.8672 30 1 2.1797 -6.9397 -0.0373 31 1 5.0389 -6.9339 0.3887 32 1 3.9392 -7.8786 1.4218 33 1 5.9024 -5.7397 2.3689 34 1 6.0826 -7.4977 2.5848 35 1 3.8132 -8.5728 3.1899 36 1 2.9466 -7.8553 4.5811 37 1 4.8716 -9.5710 5.2245 38 1 6.3465 -5.8476 4.7000 39 1 4.8905 -5.7479 5.7398 40 1 2.8177 -5.5698 4.5481 41 1 3.9104 -4.5634 3.5668 42 1 1.8397 -5.0448 2.3126 43 1 2.1001 -6.7925 2.5278 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117746338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:18 Heat of formation + Delta-G solvation = -82.799743 kcal Electronic energy + Delta-G solvation = -22807.801537 eV Core-core repulsion = 19466.543861 eV Total energy + Delta-G solvation = -3341.257676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.18028 -38.80824 -37.03089 -35.86313 -33.44895 -32.61016 -31.11541 -29.98896 -28.11011 -26.87793 -25.97014 -23.63639 -22.74475 -22.28536 -20.91340 -20.67658 -18.63961 -17.60208 -16.41326 -16.33082 -16.09911 -15.60459 -15.20257 -15.10599 -14.50260 -14.39542 -14.18927 -14.11303 -13.91258 -13.35854 -13.01985 -13.00250 -12.76954 -12.36014 -12.16460 -12.01140 -11.57056 -11.25518 -11.20560 -10.94744 -10.82671 -10.80419 -10.70632 -10.50888 -10.27814 -10.01103 -9.83002 -9.37816 -9.06498 -8.79455 -8.15238 -8.06289 -6.09754 -4.10596 2.40204 3.12500 3.30223 3.36965 3.43800 3.91864 4.11101 4.18051 4.36086 4.38051 4.66526 4.83138 4.90099 5.05656 5.13917 5.21664 5.27083 5.27776 5.30896 5.40162 5.48598 5.52068 5.58531 5.60687 5.76127 5.78485 5.88778 5.97222 6.03065 6.08198 6.20856 6.27047 6.28670 6.53067 6.74153 7.09926 7.23295 7.26408 7.43616 7.82650 8.02496 8.17891 8.61844 9.04465 9.54489 11.01932 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.003536 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.542234 B = 7916.758181 C = 8599.810358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.378 6.378 11 C 0.060 3.940 12 C 0.063 3.937 13 N -0.522 5.522 14 C 0.056 3.944 15 C -0.102 4.102 16 C -0.068 4.068 17 C 0.106 3.894 18 N -0.733 5.733 19 C 0.520 3.480 20 O -0.541 6.541 21 C -0.148 4.148 22 C -0.100 4.100 23 C 0.052 3.948 24 H 0.263 0.737 25 H 0.002 0.998 26 H 0.002 0.998 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.028 0.972 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.407 0.593 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 -17.665 6.061 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.548 4.548 8 H 0.086 0.914 9 C 0.119 3.881 10 O -0.297 6.297 11 C -0.018 4.018 12 C -0.065 4.065 13 N -0.247 5.247 14 C -0.072 4.072 15 C -0.139 4.139 16 C -0.069 4.069 17 C -0.018 4.018 18 N -0.389 5.389 19 C 0.307 3.693 20 O -0.418 6.418 21 C -0.188 4.188 22 C -0.138 4.138 23 C -0.076 4.076 24 H 0.072 0.928 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.245 0.755 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.243 -17.073 6.427 19.282 hybrid contribution -0.625 -0.367 0.006 0.725 sum 5.618 -17.440 6.433 19.419 Atomic orbital electron populations 1.69975 1.06108 1.26966 1.50954 1.24948 0.94950 0.99423 0.95262 0.86305 0.80112 0.82669 0.77564 1.19425 1.20928 1.20897 1.21096 0.94140 0.89289 1.50228 0.91429 1.20182 0.88847 0.83967 0.95067 1.87976 1.34529 1.12211 1.95002 1.22353 0.93977 0.86476 0.98984 1.22127 0.95453 0.95821 0.93086 1.61746 1.16142 1.45014 1.01751 1.22119 0.94486 0.91880 0.98697 1.21489 0.97092 1.03059 0.92297 1.21005 0.96297 0.94600 0.94993 1.22274 0.92376 0.93911 0.93253 1.46315 1.34709 1.10837 1.46991 1.21060 0.80106 0.88321 0.79800 1.90748 1.33129 1.83482 1.34463 1.22425 1.02598 0.95455 0.98328 1.21513 0.95894 0.98999 0.97443 1.22218 0.95514 1.00249 0.89635 0.92794 0.98052 0.97982 0.94287 0.94403 0.90046 0.94611 0.90542 0.95394 0.89853 0.91675 0.90209 0.90820 0.75479 0.87606 0.87479 0.91147 0.89479 0.89104 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.91 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.51 -14.82 9.43 -34.44 -0.32 -15.14 16 8 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 9 C 0.19 5.20 5.69 36.00 0.20 5.41 16 10 O -0.38 -8.79 10.23 -35.23 -0.36 -9.15 16 11 C 0.06 1.04 5.56 37.16 0.21 1.25 16 12 C 0.06 0.86 5.52 -3.82 -0.02 0.84 16 13 N -0.52 -6.90 4.65 -234.44 -1.09 -7.99 16 14 C 0.06 0.57 5.30 -3.75 -0.02 0.55 16 15 C -0.10 -0.95 4.77 -27.01 -0.13 -1.08 16 16 C -0.07 -0.60 0.60 -154.43 -0.09 -0.69 16 17 C 0.11 0.79 5.99 -3.41 -0.02 0.77 16 18 N -0.73 -6.14 6.25 -59.39 -0.37 -6.51 16 19 C 0.52 5.86 8.45 -10.74 -0.09 5.77 16 20 O -0.54 -8.36 18.03 5.56 0.10 -8.26 16 21 C -0.15 -1.37 5.96 -27.05 -0.16 -1.53 16 22 C -0.10 -1.03 4.70 -27.01 -0.13 -1.16 16 23 C 0.05 0.62 4.91 -3.74 -0.02 0.60 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 26 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.04 0.63 6.04 -51.93 -0.31 0.32 16 29 H 0.08 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 32 H 0.03 0.25 6.60 -51.93 -0.34 -0.09 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.54 6.29 -51.93 -0.33 0.21 16 36 H 0.07 0.50 7.77 -51.93 -0.40 0.10 16 37 H 0.41 2.78 8.96 -40.82 -0.37 2.42 16 38 H 0.11 0.97 7.88 -51.93 -0.41 0.56 16 39 H 0.11 0.91 7.87 -51.93 -0.41 0.50 16 40 H 0.07 0.62 8.02 -51.93 -0.42 0.20 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 1.33 5.76 -51.93 -0.30 1.03 16 43 H 0.03 0.26 7.59 -51.93 -0.39 -0.13 16 LS Contribution 337.78 15.07 5.09 5.09 Total: -1.00 -33.50 337.78 -8.63 -42.14 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -7.03 Total: -3.09 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -0.69 Total: -2.95 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.72 Total: -40.46 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.26 Total: -17.41 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.50 -8.63 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117746338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.662 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds