Wall clock time and date at job start Tue Mar 31 2020 06:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00014 * 2 1 4 4 H 1.48498 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47265 * 299.99826 * 3 2 1 6 6 H 1.48497 * 109.47301 * 59.99674 * 3 2 1 7 7 C 1.37874 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99764 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00251 * 359.97438 * 7 2 1 10 10 O 1.42906 * 109.47111 * 179.97438 * 9 7 2 11 11 C 1.42900 * 113.99774 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47064 * 180.02562 * 11 10 9 13 13 N 1.46900 * 109.47356 * 62.22274 * 12 11 10 14 14 C 1.46856 * 110.99832 * 176.37338 * 13 12 11 15 15 C 1.53196 * 109.41783 * 173.46116 * 14 13 12 16 16 C 1.52247 * 109.35742 * 57.86768 * 15 14 13 17 17 C 1.53754 * 110.75647 * 67.81780 * 16 15 14 18 18 N 1.46937 * 105.32237 * 93.52006 * 17 16 15 19 19 C 1.34500 * 111.29553 * 16.62734 * 18 17 16 20 20 O 1.21281 * 124.94244 * 179.31983 * 19 18 17 21 21 C 1.51454 * 110.11325 * 359.19565 * 19 18 17 22 22 C 1.52246 * 111.06522 * 304.30335 * 16 15 14 23 23 C 1.46859 * 110.99559 * 51.98885 * 13 12 11 24 24 H 0.97000 * 119.99916 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47130 * 60.00457 * 9 7 2 26 26 H 1.08993 * 109.47526 * 299.99916 * 9 7 2 27 27 H 1.08997 * 109.47380 * 60.00359 * 11 10 9 28 28 H 1.09002 * 109.47327 * 300.00003 * 11 10 9 29 29 H 1.09010 * 109.46676 * 302.22659 * 12 11 10 30 30 H 1.08998 * 109.46999 * 182.22689 * 12 11 10 31 31 H 1.08994 * 109.47946 * 53.47693 * 14 13 12 32 32 H 1.08998 * 109.47788 * 293.44186 * 14 13 12 33 33 H 1.09004 * 109.49275 * 297.90312 * 15 14 13 34 34 H 1.08994 * 109.49456 * 177.83054 * 15 14 13 35 35 H 1.09003 * 110.27020 * 334.55325 * 17 16 15 36 36 H 1.08998 * 110.27036 * 212.48776 * 17 16 15 37 37 H 0.96995 * 124.35079 * 196.35944 * 18 17 16 38 38 H 1.09004 * 110.67114 * 226.00456 * 21 19 18 39 39 H 1.09000 * 110.30405 * 103.32621 * 21 19 18 40 40 H 1.08997 * 109.49395 * 175.65763 * 22 16 15 41 41 H 1.08997 * 109.49213 * 295.73455 * 22 16 15 42 42 H 1.08998 * 109.48194 * 306.52485 * 23 13 12 43 43 H 1.08993 * 109.48474 * 66.55924 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0017 10 8 2.1797 -3.5853 0.0015 11 6 1.5651 -4.8754 0.0019 12 6 2.6480 -5.9562 0.0023 13 7 3.4506 -5.8449 1.2276 14 6 4.4468 -6.9212 1.3037 15 6 5.3670 -6.6795 2.5044 16 6 4.5310 -6.6091 3.7749 17 6 3.9163 -7.9806 4.0992 18 7 4.8637 -8.6227 5.0206 19 6 5.7150 -7.7256 5.5494 20 8 6.5899 -7.9852 6.3482 21 6 5.4239 -6.3446 4.9999 22 6 3.4475 -5.5459 3.6588 23 6 2.5922 -5.8261 2.4190 24 1 -0.4850 0.8401 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 0.9446 -4.9826 -0.8877 28 1 0.9453 -4.9823 0.8922 29 1 3.2923 -5.8252 -0.8672 30 1 2.1797 -6.9397 -0.0373 31 1 5.0389 -6.9339 0.3887 32 1 3.9392 -7.8786 1.4218 33 1 5.9024 -5.7397 2.3689 34 1 6.0826 -7.4977 2.5848 35 1 3.8132 -8.5728 3.1899 36 1 2.9466 -7.8553 4.5811 37 1 4.8716 -9.5710 5.2245 38 1 6.3465 -5.8476 4.7000 39 1 4.8905 -5.7479 5.7398 40 1 2.8177 -5.5698 4.5481 41 1 3.9104 -4.5634 3.5668 42 1 1.8397 -5.0448 2.3126 43 1 2.1001 -6.7925 2.5278 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117746338.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:18 Heat of formation + Delta-G solvation = -108.503878 kcal Electronic energy + Delta-G solvation = -22808.916151 eV Core-core repulsion = 19466.543861 eV Total energy + Delta-G solvation = -3342.372291 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.97861 -39.81032 -38.47624 -37.06715 -34.94963 -34.17520 -31.98841 -31.06943 -29.50024 -28.39765 -26.93193 -24.57062 -24.43748 -23.62018 -21.95011 -21.54310 -19.45869 -18.57964 -18.41152 -17.43748 -17.29203 -16.94620 -16.44325 -16.07695 -15.95165 -15.65428 -15.38998 -15.08074 -14.95956 -14.60845 -14.19306 -13.97056 -13.71584 -13.62297 -13.42407 -13.12750 -12.90840 -12.73764 -12.64637 -12.43264 -12.21728 -12.06859 -11.92822 -11.61674 -11.44135 -11.25765 -11.16571 -10.83776 -10.76924 -10.11666 -10.11204 -8.99951 -8.29251 -6.40299 1.42033 1.42731 1.54056 1.57822 2.37391 2.42998 2.98532 3.04785 3.29602 3.36592 3.42067 3.65177 3.90845 4.11076 4.14215 4.25827 4.31374 4.42250 4.53063 4.54206 4.59572 4.62408 4.69337 4.71766 4.76361 4.83964 4.88221 4.98341 5.02518 5.08002 5.14878 5.23641 5.24984 5.30019 5.43024 5.59551 5.82565 5.99806 6.01570 6.24515 6.36894 6.61520 6.91263 7.23557 7.32174 8.83167 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023011 B = 0.003536 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.542234 B = 7916.758181 C = 8599.810358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.541 4.541 8 H 0.059 0.941 9 C 0.210 3.790 10 O -0.393 6.393 11 C 0.050 3.950 12 C 0.072 3.928 13 N -0.550 5.550 14 C 0.059 3.941 15 C -0.098 4.098 16 C -0.060 4.060 17 C 0.109 3.891 18 N -0.719 5.719 19 C 0.516 3.484 20 O -0.590 6.590 21 C -0.145 4.145 22 C -0.096 4.096 23 C 0.053 3.947 24 H 0.270 0.730 25 H -0.019 1.019 26 H -0.016 1.016 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.416 0.584 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.057 0.943 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.670 -18.619 6.126 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.579 4.579 8 H 0.077 0.923 9 C 0.135 3.865 10 O -0.312 6.312 11 C -0.027 4.027 12 C -0.056 4.056 13 N -0.276 5.276 14 C -0.068 4.068 15 C -0.136 4.136 16 C -0.061 4.061 17 C -0.014 4.014 18 N -0.373 5.373 19 C 0.304 3.696 20 O -0.471 6.471 21 C -0.185 4.185 22 C -0.134 4.134 23 C -0.074 4.074 24 H 0.078 0.922 25 H -0.001 1.001 26 H 0.002 0.998 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.256 0.744 38 H 0.122 0.878 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.400 -18.070 6.469 20.232 hybrid contribution -0.743 -0.144 -0.040 0.758 sum 5.657 -18.213 6.429 20.126 Atomic orbital electron populations 1.70073 1.07674 1.28437 1.50919 1.25912 0.95913 1.03237 0.94101 0.85183 0.78720 0.77595 0.78204 1.18928 1.19776 1.19712 1.21402 0.93998 0.90930 1.51589 0.92252 1.19759 0.88618 0.85015 0.93090 1.87927 1.34484 1.13764 1.95036 1.22720 0.95771 0.84754 0.99486 1.22026 0.94499 0.95640 0.93416 1.61685 1.16904 1.47201 1.01784 1.22149 0.93852 0.91864 0.98968 1.21451 0.97144 1.02655 0.92353 1.20877 0.95625 0.95124 0.94479 1.22365 0.92359 0.92864 0.93854 1.46278 1.33812 1.11128 1.46076 1.21306 0.79736 0.89300 0.79255 1.90723 1.35336 1.84264 1.36798 1.22413 1.02789 0.94667 0.98653 1.21445 0.96235 0.98202 0.97475 1.22157 0.95074 1.00403 0.89793 0.92156 1.00108 0.99842 0.93918 0.93699 0.90574 0.91123 0.90529 0.93028 0.91601 0.90472 0.88421 0.89288 0.74403 0.87817 0.86675 0.89488 0.92066 0.92415 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.73 13.29 21.45 0.28 -55.44 16 2 C 0.01 0.38 5.46 84.65 0.46 0.84 16 3 Si 0.98 44.42 29.54 68.60 2.03 46.44 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.54 -32.23 9.43 25.60 0.24 -31.98 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.70 5.69 71.23 0.41 12.11 16 10 O -0.39 -18.74 10.23 -148.98 -1.52 -20.27 16 11 C 0.05 1.73 5.56 71.98 0.40 2.13 16 12 C 0.07 1.85 5.52 86.30 0.48 2.33 16 13 N -0.55 -13.73 4.65 -895.65 -4.16 -17.90 16 14 C 0.06 1.04 5.30 86.38 0.46 1.50 16 15 C -0.10 -1.65 4.77 30.41 0.14 -1.51 16 16 C -0.06 -0.93 0.60 -52.13 -0.03 -0.97 16 17 C 0.11 1.23 5.99 86.55 0.52 1.75 16 18 N -0.72 -10.17 6.25 -460.35 -2.88 -13.05 16 19 C 0.52 10.97 8.45 87.94 0.74 11.71 16 20 O -0.59 -18.12 18.03 -3.03 -0.05 -18.17 16 21 C -0.15 -2.52 5.96 30.38 0.18 -2.33 16 22 C -0.10 -1.84 4.70 30.41 0.14 -1.70 16 23 C 0.05 1.20 4.91 86.38 0.42 1.62 16 24 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 25 H -0.02 -1.10 8.14 -2.39 -0.02 -1.11 16 26 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 27 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.04 1.50 6.04 -2.39 -0.01 1.49 16 29 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 32 H 0.05 0.69 6.60 -2.39 -0.02 0.67 16 33 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.10 0.84 6.29 -2.39 -0.02 0.83 16 36 H 0.09 0.83 7.77 -2.39 -0.02 0.82 16 37 H 0.42 4.60 8.96 -92.71 -0.83 3.77 16 38 H 0.10 1.85 7.88 -2.39 -0.02 1.83 16 39 H 0.12 1.81 7.87 -2.39 -0.02 1.79 16 40 H 0.09 1.37 8.02 -2.39 -0.02 1.35 16 41 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 1.69 5.76 -2.39 -0.01 1.67 16 43 H 0.05 0.89 7.59 -2.39 -0.02 0.87 16 Total: -1.00 -73.80 337.78 -1.57 -75.38 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.17 Total: 7.51 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 4.57 Total: -4.50 kcal Atomic # 7 Polarization: -79.64 SS G_CDS: -6.76 Total: -86.39 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.58 Total: -38.44 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.80 -1.57 -75.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117746338.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.128 kcal (2) G-P(sol) polarization free energy of solvation -73.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds