Wall clock time and date at job start Tue Mar 31 2020 06:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86809 * 120.00018 * 2 1 4 4 H 1.48498 * 109.46953 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46801 * 59.99864 * 3 2 1 6 6 H 1.48504 * 109.46774 * 299.99663 * 3 2 1 7 7 C 1.40046 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00556 * 159.27774 * 7 2 1 9 9 C 1.46378 * 119.99666 * 339.28506 * 7 2 1 10 10 O 1.21682 * 120.00039 * 341.32541 * 9 7 2 11 11 N 1.34774 * 119.99960 * 161.32686 * 9 7 2 12 12 C 1.46926 * 120.62941 * 354.88098 * 11 9 7 13 13 C 1.52761 * 109.01309 * 233.58459 * 12 11 9 14 14 C 1.53043 * 109.38340 * 305.59529 * 13 12 11 15 15 C 1.53040 * 109.54062 * 61.23649 * 14 13 12 16 16 H 1.09000 * 109.49587 * 58.58221 * 15 14 13 17 17 N 1.46893 * 109.49736 * 178.68288 * 15 14 13 18 18 C 1.46896 * 111.00261 * 272.27459 * 17 15 14 19 19 C 1.53181 * 109.54281 * 271.96771 * 18 17 15 20 20 C 1.53105 * 109.15628 * 183.23626 * 19 18 17 21 21 O 1.42902 * 109.48620 * 57.48071 * 20 19 18 22 22 C 1.42908 * 114.09261 * 298.88510 * 21 20 19 23 23 C 1.53095 * 109.41516 * 61.16251 * 22 21 20 24 24 C 1.46925 * 120.63093 * 175.16888 * 11 9 7 25 25 H 0.97001 * 119.99800 * 174.19734 * 1 2 3 26 26 H 1.08998 * 109.58838 * 353.42835 * 12 11 9 27 27 H 1.09004 * 109.58532 * 113.84634 * 12 11 9 28 28 H 1.08998 * 109.57102 * 185.55103 * 13 12 11 29 29 H 1.09007 * 109.35433 * 65.49914 * 13 12 11 30 30 H 1.08993 * 109.45867 * 301.21393 * 14 13 12 31 31 H 1.09003 * 109.44718 * 181.25086 * 14 13 12 32 32 H 1.00901 * 111.00115 * 148.31859 * 17 15 14 33 33 H 1.08999 * 109.54453 * 32.13987 * 18 17 15 34 34 H 1.08997 * 109.52488 * 303.05616 * 19 18 17 35 35 H 1.09002 * 109.52033 * 63.24748 * 19 18 17 36 36 H 1.08994 * 109.41037 * 297.49185 * 20 19 18 37 37 H 1.09005 * 109.48083 * 177.50257 * 20 19 18 38 38 H 1.08996 * 109.48050 * 301.17315 * 22 21 20 39 39 H 1.09007 * 109.47598 * 181.14055 * 22 21 20 40 40 H 1.09000 * 109.51770 * 182.48366 * 23 22 21 41 41 H 1.08993 * 109.57553 * 62.32459 * 23 22 21 42 42 H 1.08996 * 109.58528 * 246.14828 * 24 11 9 43 43 H 1.09002 * 109.58725 * 6.43738 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8819 2.3964 1.2125 6 1 1.8820 2.3964 -1.2126 7 6 2.0070 -1.2128 0.0005 8 1 3.0346 -1.2433 -0.3304 9 6 1.3461 -2.4393 0.4495 10 8 0.3381 -2.3739 1.1280 11 7 1.8540 -3.6410 0.1114 12 6 3.0036 -3.7387 -0.7983 13 6 2.6481 -4.6765 -1.9506 14 6 2.1768 -6.0187 -1.3862 15 6 0.9251 -5.8038 -0.5323 16 1 0.1436 -5.3483 -1.1405 17 7 0.4553 -7.0966 -0.0169 18 6 -0.4575 -7.7428 -0.9692 19 6 -1.8911 -7.2725 -0.7047 20 6 -2.8444 -8.0116 -1.6476 21 8 -2.7074 -9.4210 -1.4554 22 6 -1.3993 -9.9236 -1.7354 23 6 -0.3882 -9.2630 -0.7945 24 6 1.2647 -4.8785 0.6405 25 1 -0.4850 -0.8358 -0.0849 26 1 3.2422 -2.7511 -1.1930 27 1 3.8634 -4.1364 -0.2592 28 1 3.5257 -4.8334 -2.5777 29 1 1.8503 -4.2317 -2.5454 30 1 2.9660 -6.4513 -0.7713 31 1 1.9440 -6.6962 -2.2078 32 1 0.0185 -6.9887 0.8863 33 1 -0.1692 -7.4792 -1.9868 34 1 -2.1611 -7.4904 0.3286 35 1 -1.9608 -6.1993 -0.8818 36 1 -2.6003 -7.7600 -2.6797 37 1 -3.8708 -7.7136 -1.4337 38 1 -1.1363 -9.6971 -2.7686 39 1 -1.3847 -11.0031 -1.5846 40 1 0.6158 -9.6120 -1.0358 41 1 -0.6259 -9.5223 0.2371 42 1 1.9797 -5.3711 1.2993 43 1 0.3576 -4.6425 1.1969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001153748867.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:28 Heat of formation + Delta-G solvation = -104.077499 kcal Electronic energy + Delta-G solvation = -23161.017864 eV Core-core repulsion = 19818.837516 eV Total energy + Delta-G solvation = -3342.180349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.79016 -38.75420 -36.75437 -35.15798 -32.59733 -32.14870 -31.30617 -31.11261 -28.45395 -26.01620 -24.51227 -23.68913 -23.53570 -22.03278 -20.45345 -20.30424 -19.09553 -17.19585 -16.59916 -16.17537 -15.68537 -15.35556 -15.02185 -14.73751 -14.40268 -14.24388 -13.88245 -13.78040 -13.58332 -13.25340 -13.08381 -12.57400 -12.51474 -11.92355 -11.78068 -11.54842 -11.49625 -11.41443 -11.28699 -10.92209 -10.84706 -10.51031 -10.46131 -10.31909 -10.26144 -10.16528 -10.01271 -9.77676 -8.76908 -8.39283 -7.78327 -7.49103 -6.78928 -4.72474 3.26392 3.30431 3.46333 3.68084 3.90751 4.20961 4.42034 4.55051 4.58887 4.69191 4.82450 4.99261 5.03301 5.12601 5.17669 5.29285 5.31821 5.46930 5.49480 5.50486 5.53691 5.58798 5.70708 5.71420 5.86677 5.95020 5.98454 6.04316 6.09834 6.17695 6.32069 6.34513 6.39025 6.51924 6.67465 6.99926 7.09652 7.37545 7.46371 7.86021 8.02687 8.33428 8.82663 9.35881 10.30007 10.51166 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028110 B = 0.003882 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.858411 B = 7210.986299 C = 7739.735745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.054 3.946 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.282 1.282 7 C -0.616 4.616 8 H 0.071 0.929 9 C 0.558 3.442 10 O -0.623 6.623 11 N -0.635 5.635 12 C 0.122 3.878 13 C -0.135 4.135 14 C -0.099 4.099 15 C 0.075 3.925 16 H 0.046 0.954 17 N -0.678 5.678 18 C 0.088 3.912 19 C -0.187 4.187 20 C 0.066 3.934 21 O -0.385 6.385 22 C 0.060 3.940 23 C -0.141 4.141 24 C 0.119 3.881 25 H 0.301 0.699 26 H 0.094 0.906 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.342 0.658 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 -15.594 -5.770 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.169 4.169 3 Si 0.902 3.098 4 H -0.205 1.205 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.652 4.652 8 H 0.089 0.911 9 C 0.367 3.633 10 O -0.512 6.512 11 N -0.371 5.371 12 C -0.002 4.002 13 C -0.174 4.174 14 C -0.137 4.137 15 C -0.036 4.036 16 H 0.064 0.936 17 N -0.308 5.308 18 C -0.022 4.022 19 C -0.227 4.227 20 C -0.012 4.012 21 O -0.304 6.304 22 C -0.017 4.017 23 C -0.179 4.179 24 C -0.006 4.006 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.161 0.839 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.020 -14.405 -5.483 15.447 hybrid contribution -0.281 -1.068 -0.092 1.108 sum 0.739 -15.473 -5.575 16.463 Atomic orbital electron populations 1.70108 1.08261 1.34723 1.30339 1.26625 0.95808 1.03141 0.91324 0.83518 0.75027 0.73690 0.77607 1.20544 1.20365 1.20791 1.21854 1.00919 0.92449 1.49993 0.91067 1.18417 0.83112 0.82168 0.79564 1.90503 1.29155 1.86673 1.44891 1.47976 1.33831 1.05014 1.50291 1.21333 0.88286 1.00566 0.90009 1.21895 1.01073 0.95882 0.98579 1.21455 0.97212 0.96615 0.98436 1.21930 0.96644 0.87989 0.97013 0.93604 1.60603 1.41179 1.23531 1.05506 1.21612 0.89608 0.94122 0.96884 1.22963 0.96986 1.01290 1.01422 1.22506 0.99959 0.80797 0.97892 1.87920 1.30459 1.22386 1.89619 1.22615 0.82738 0.98690 0.97661 1.22172 0.99937 0.94832 1.00992 1.21256 0.99336 0.85799 0.94195 0.88492 0.88747 0.93936 0.91542 0.92025 0.91659 0.92946 0.83904 0.90622 0.90732 0.90656 0.93224 0.88874 0.93330 0.88853 0.90336 0.90988 0.93182 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -24.27 13.21 55.55 0.73 -23.54 16 2 C 0.05 1.49 5.34 -17.37 -0.09 1.40 16 3 Si 1.08 23.42 29.98 -169.99 -5.10 18.32 16 4 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.62 -17.18 8.44 -35.63 -0.30 -17.48 16 8 H 0.07 1.84 6.33 -52.49 -0.33 1.51 16 9 C 0.56 15.67 7.23 -12.99 -0.09 15.57 16 10 O -0.62 -19.60 14.22 5.20 0.07 -19.52 16 11 N -0.63 -14.33 2.98 -174.69 -0.52 -14.85 16 12 C 0.12 2.28 6.25 -3.93 -0.02 2.26 16 13 C -0.14 -2.08 6.06 -26.83 -0.16 -2.24 16 14 C -0.10 -1.43 5.41 -26.69 -0.14 -1.57 16 15 C 0.07 1.18 2.44 -67.59 -0.17 1.02 16 16 H 0.05 0.82 7.38 -51.93 -0.38 0.44 16 17 N -0.68 -8.98 6.09 -99.43 -0.61 -9.59 16 18 C 0.09 1.03 2.35 -67.53 -0.16 0.87 16 19 C -0.19 -2.20 5.40 -26.58 -0.14 -2.34 16 20 C 0.07 0.70 6.84 37.21 0.25 0.96 16 21 O -0.39 -4.49 10.77 -35.23 -0.38 -4.87 16 22 C 0.06 0.57 6.84 37.21 0.25 0.82 16 23 C -0.14 -1.42 5.75 -26.59 -0.15 -1.57 16 24 C 0.12 2.31 5.68 -3.71 -0.02 2.29 16 25 H 0.30 9.55 6.66 -40.82 -0.27 9.28 16 26 H 0.09 1.88 5.62 -51.93 -0.29 1.59 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.69 7.67 -51.93 -0.40 0.29 16 32 H 0.34 4.54 7.99 -39.29 -0.31 4.22 16 33 H 0.08 0.92 7.32 -51.93 -0.38 0.54 16 34 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 35 H 0.07 0.99 7.74 -51.93 -0.40 0.59 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.73 6.99 -51.93 -0.36 1.37 16 LS Contribution 333.95 15.07 5.03 5.03 Total: -1.00 -32.49 333.95 -8.71 -41.21 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -7.00 Total: 7.82 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: -0.95 Total: -0.02 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.39 Total: -47.97 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.31 Total: -24.39 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.10 Total: 18.32 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.49 -8.71 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153748867.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.870 kcal (2) G-P(sol) polarization free energy of solvation -32.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds