Wall clock time and date at job start Tue Mar 31 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30666 * 1 3 3 Si 1.86802 * 119.99846 * 2 1 4 4 H 1.48502 * 109.47499 * 270.00316 * 3 2 1 5 5 H 1.48507 * 109.46892 * 29.99951 * 3 2 1 6 6 H 1.48502 * 109.47300 * 149.99877 * 3 2 1 7 7 C 1.40044 * 120.00503 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00320 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00047 * 0.02562 * 7 2 1 10 10 O 1.21695 * 120.00085 * 5.67891 * 9 7 2 11 11 N 1.34777 * 120.00400 * 185.68390 * 9 7 2 12 12 C 1.46921 * 120.62842 * 354.73342 * 11 9 7 13 13 C 1.53193 * 108.77727 * 126.43656 * 12 11 9 14 14 C 1.53039 * 109.31398 * 54.63131 * 13 12 11 15 15 C 1.53036 * 109.53652 * 298.63793 * 14 13 12 16 16 H 1.08998 * 109.49816 * 301.37644 * 15 14 13 17 17 N 1.46904 * 109.49444 * 181.31695 * 15 14 13 18 18 C 1.46904 * 111.00006 * 155.06636 * 17 15 14 19 19 C 1.53180 * 109.54136 * 274.82023 * 18 17 15 20 20 C 1.53104 * 109.15395 * 183.23987 * 19 18 17 21 21 O 1.42905 * 109.48832 * 57.47650 * 20 19 18 22 22 C 1.42909 * 114.09633 * 298.88872 * 21 20 19 23 23 C 1.53092 * 109.41423 * 61.15603 * 22 21 20 24 24 C 1.46937 * 120.60609 * 174.75372 * 11 9 7 25 25 H 0.96997 * 120.00420 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.59126 * 6.64708 * 12 11 9 27 27 H 1.08995 * 109.58840 * 246.22008 * 12 11 9 28 28 H 1.09003 * 109.49450 * 294.68068 * 13 12 11 29 29 H 1.08995 * 109.52749 * 174.60795 * 13 12 11 30 30 H 1.09001 * 109.45901 * 178.61997 * 14 13 12 31 31 H 1.08998 * 109.45548 * 58.66002 * 14 13 12 32 32 H 1.00904 * 110.99951 * 279.01854 * 17 15 14 33 33 H 1.09004 * 109.54148 * 34.99614 * 18 17 15 34 34 H 1.08995 * 109.52282 * 303.05933 * 19 18 17 35 35 H 1.08999 * 109.52084 * 63.24959 * 19 18 17 36 36 H 1.08999 * 109.40970 * 297.49602 * 20 19 18 37 37 H 1.09001 * 109.49109 * 177.50654 * 20 19 18 38 38 H 1.08999 * 109.47608 * 301.16922 * 22 21 20 39 39 H 1.09004 * 109.48454 * 181.14694 * 22 21 20 40 40 H 1.08997 * 109.51571 * 182.48647 * 23 22 21 41 41 H 1.08997 * 109.57479 * 62.33324 * 23 22 21 42 42 H 1.09005 * 109.55772 * 113.76548 * 24 11 9 43 43 H 1.08998 * 109.61338 * 353.33838 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4881 2.0466 -1.4001 5 1 1.4380 2.6527 0.7001 6 1 3.5382 1.4403 0.7001 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0017 10 8 0.0628 -2.4831 -0.1064 11 7 1.9441 -3.6448 0.1134 12 6 3.4132 -3.6662 0.1250 13 6 3.8855 -4.4204 1.3720 14 6 3.2365 -5.8060 1.4016 15 6 1.7151 -5.6571 1.4745 16 1 1.4474 -5.0902 2.3661 17 7 1.0946 -6.9873 1.5346 18 6 -0.2244 -6.9244 2.1783 19 6 -0.0573 -7.0112 3.6985 20 6 -1.4400 -7.0264 4.3558 21 8 -2.1988 -8.1242 3.8446 22 6 -2.4272 -8.0695 2.4349 23 6 -1.0843 -8.0984 1.7004 24 6 1.2175 -4.9167 0.2291 25 1 -0.4850 0.8400 0.0004 26 1 3.7934 -2.6449 0.1498 27 1 3.7783 -4.1726 -0.7684 28 1 3.5974 -3.8645 2.2642 29 1 4.9699 -4.5270 1.3443 30 1 3.5900 -6.3540 2.2750 31 1 3.5050 -6.3521 0.4973 32 1 1.0291 -7.3977 0.6151 33 1 -0.7125 -5.9851 1.9182 34 1 0.4765 -7.9264 3.9546 35 1 0.5065 -6.1483 4.0529 36 1 -1.9568 -6.0927 4.1339 37 1 -1.3286 -7.1327 5.4348 38 1 -2.9569 -7.1494 2.1880 39 1 -3.0269 -8.9272 2.1302 40 1 -1.2543 -8.0123 0.6272 41 1 -0.5715 -9.0362 1.9138 42 1 1.4033 -5.5250 -0.6562 43 1 0.1494 -4.7207 0.3229 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001153748871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:30 Heat of formation + Delta-G solvation = -114.939110 kcal Electronic energy + Delta-G solvation = -23258.169438 eV Core-core repulsion = 19915.518094 eV Total energy + Delta-G solvation = -3342.651343 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.85770 -40.05951 -38.16766 -36.38680 -34.71866 -33.47533 -32.43374 -32.11498 -29.82263 -28.22081 -25.82166 -24.96464 -24.70757 -23.08763 -22.04316 -21.13702 -20.56536 -18.47381 -17.84542 -17.45427 -17.03628 -16.55638 -16.40121 -16.04801 -15.85048 -15.77238 -15.16843 -15.03032 -14.90110 -14.41501 -14.27078 -13.85331 -13.61435 -13.44574 -13.30329 -13.10517 -12.77752 -12.66677 -12.64237 -12.34291 -12.18873 -12.02862 -11.79516 -11.68742 -11.55551 -11.46734 -11.22995 -10.96010 -10.63119 -9.90070 -9.65215 -8.98946 -8.32023 -6.86790 1.38150 1.39473 1.54787 2.21202 2.42674 2.70904 2.88569 3.12077 3.53276 3.67248 3.80997 3.91190 3.98635 4.01501 4.13266 4.20050 4.24518 4.26356 4.31223 4.46704 4.55547 4.61105 4.68041 4.71959 4.77383 4.83355 4.89690 4.94490 5.02822 5.05456 5.07393 5.12179 5.21925 5.29020 5.39634 5.47216 5.73620 5.93511 6.13717 6.16767 6.33710 6.42374 6.85201 7.39105 8.43065 8.64173 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020565 B = 0.004411 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.216291 B = 6346.889524 C = 7081.813785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.028 3.972 3 Si 0.996 3.004 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.245 1.245 7 C -0.568 4.568 8 H 0.096 0.904 9 C 0.538 3.462 10 O -0.636 6.636 11 N -0.642 5.642 12 C 0.113 3.887 13 C -0.126 4.126 14 C -0.091 4.091 15 C 0.088 3.912 16 H 0.050 0.950 17 N -0.661 5.661 18 C 0.079 3.921 19 C -0.134 4.134 20 C 0.059 3.941 21 O -0.395 6.395 22 C 0.059 3.941 23 C -0.148 4.148 24 C 0.100 3.900 25 H 0.273 0.727 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.102 0.898 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.347 0.653 33 H 0.015 0.985 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.039 0.961 37 H 0.113 0.887 38 H 0.042 0.958 39 H 0.118 0.882 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 -14.094 5.116 15.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.187 4.187 3 Si 0.815 3.185 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.605 4.605 8 H 0.114 0.886 9 C 0.345 3.655 10 O -0.524 6.524 11 N -0.379 5.379 12 C -0.010 4.010 13 C -0.165 4.165 14 C -0.129 4.129 15 C -0.023 4.023 16 H 0.069 0.931 17 N -0.291 5.291 18 C -0.031 4.031 19 C -0.173 4.173 20 C -0.018 4.018 21 O -0.314 6.314 22 C -0.018 4.018 23 C -0.186 4.186 24 C -0.026 4.026 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.166 0.834 33 H 0.034 0.966 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.131 0.869 38 H 0.060 0.940 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.074 0.926 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.679 -14.368 5.749 16.167 hybrid contribution -0.671 1.708 -1.078 2.128 sum 4.008 -12.660 4.671 14.076 Atomic orbital electron populations 1.70193 1.09659 1.28891 1.36717 1.27016 0.95473 1.05029 0.91135 0.85051 0.78953 0.75063 0.79469 1.18632 1.19945 1.16782 1.21523 0.94881 0.89678 1.54370 0.88605 1.18727 0.86539 0.84343 0.75939 1.90532 1.16884 1.87467 1.57518 1.48014 1.06804 1.05083 1.78005 1.21709 0.79459 1.01823 0.97982 1.21905 1.01532 0.95789 0.97272 1.21373 0.91732 0.96529 1.03234 1.21827 0.96593 0.88387 0.95537 0.93118 1.60804 1.21512 1.20350 1.26452 1.21583 0.89227 0.96842 0.95424 1.22119 0.97773 1.03146 0.94220 1.22676 0.90417 0.89027 0.99667 1.87883 1.73744 1.46737 1.23018 1.22696 0.95961 1.02756 0.80418 1.22316 0.96457 0.98888 1.00896 1.21931 0.96243 0.86277 0.98118 0.91673 0.90077 0.91953 0.93440 0.87956 0.90114 0.90788 0.83370 0.96644 0.89760 0.92039 0.94273 0.86859 0.93999 0.86399 0.90134 0.89185 0.92563 0.94475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.07 11.84 21.83 0.26 -50.81 16 2 C 0.03 1.58 5.50 85.30 0.47 2.05 16 3 Si 1.00 40.76 29.56 68.60 2.03 42.79 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 6 H -0.24 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.57 -32.16 8.87 24.83 0.22 -31.94 16 8 H 0.10 4.80 5.64 -2.91 -0.02 4.79 16 9 C 0.54 31.83 7.61 86.36 0.66 32.48 16 10 O -0.64 -43.65 14.48 -4.33 -0.06 -43.72 16 11 N -0.64 -29.58 2.97 -823.97 -2.45 -32.03 16 12 C 0.11 4.00 6.35 86.36 0.55 4.55 16 13 C -0.13 -3.49 6.08 30.67 0.19 -3.31 16 14 C -0.09 -2.31 5.49 30.62 0.17 -2.14 16 15 C 0.09 2.75 2.43 44.99 0.11 2.86 16 16 H 0.05 1.87 7.16 -2.39 -0.02 1.86 16 17 N -0.66 -17.01 6.06 -468.45 -2.84 -19.85 16 18 C 0.08 2.11 2.39 45.03 0.11 2.22 16 19 C -0.13 -3.31 5.62 30.69 0.17 -3.14 16 20 C 0.06 1.39 6.84 72.02 0.49 1.88 16 21 O -0.39 -9.73 10.77 -148.98 -1.60 -11.33 16 22 C 0.06 1.25 6.84 72.01 0.49 1.75 16 23 C -0.15 -3.12 5.41 30.68 0.17 -2.96 16 24 C 0.10 3.98 5.66 86.36 0.49 4.47 16 25 H 0.27 15.35 8.29 -92.71 -0.77 14.58 16 26 H 0.08 3.06 5.30 -2.39 -0.01 3.04 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.35 8.05 8.05 -89.69 -0.72 7.33 16 33 H 0.02 0.53 7.19 -2.38 -0.02 0.51 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 1.63 7.49 -2.39 -0.02 1.61 16 36 H 0.04 0.99 8.14 -2.39 -0.02 0.98 16 37 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 2.02 8.04 -2.38 -0.02 2.00 16 43 H 0.04 1.77 6.42 -2.39 -0.02 1.76 16 Total: -1.00 -76.59 333.40 -0.11 -76.70 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: 0.28 Total: 29.48 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: 4.28 Total: 8.77 kcal Atomic # 7 Polarization: -97.66 SS G_CDS: -5.03 Total: -102.69 kcal Atomic # 8 Polarization: -53.38 SS G_CDS: -1.67 Total: -55.05 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -76.59 -0.11 -76.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001153748871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.240 kcal (2) G-P(sol) polarization free energy of solvation -76.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds