Wall clock time and date at job start Tue Mar 31 2020 06:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86810 * 119.99814 * 2 1 4 4 H 1.48498 * 109.46876 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46995 * 300.00361 * 3 2 1 6 6 H 1.48501 * 109.46762 * 60.00116 * 3 2 1 7 7 C 1.38815 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99884 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99647 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99522 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46857 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47121 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.47011 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99912 * 179.97438 * 13 12 11 15 15 O 1.21282 * 119.99979 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99824 * 180.02562 * 14 13 12 17 17 C 1.54033 * 111.85473 * 299.63596 * 16 14 13 18 18 C 1.54833 * 104.46848 * 215.06899 * 17 16 14 19 19 C 1.54874 * 102.73836 * 37.57682 * 18 17 16 20 20 C 1.54342 * 104.13017 * 321.28607 * 19 18 17 21 21 H 1.09002 * 111.39666 * 146.69643 * 20 19 18 22 22 O 1.43816 * 108.58543 * 269.71661 * 20 19 18 23 23 C 1.45294 * 106.66401 * 139.79277 * 22 20 19 24 24 C 1.54612 * 112.67129 * 62.95278 * 16 14 13 25 25 H 0.96998 * 120.00610 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99978 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.46942 * 60.00620 * 10 9 7 28 28 H 1.08996 * 109.47551 * 299.99845 * 10 9 7 29 29 H 1.08994 * 109.47373 * 59.99592 * 11 10 9 30 30 H 1.09008 * 109.47069 * 300.00019 * 11 10 9 31 31 H 1.08999 * 109.47050 * 60.00153 * 12 11 10 32 32 H 1.08991 * 109.46824 * 299.99850 * 12 11 10 33 33 H 0.97004 * 119.99789 * 0.02562 * 13 12 11 34 34 H 1.08993 * 110.43310 * 96.32257 * 17 16 14 35 35 H 1.08996 * 110.54021 * 333.86649 * 17 16 14 36 36 H 1.09007 * 110.75554 * 279.26802 * 18 17 16 37 37 H 1.08999 * 110.76035 * 155.88924 * 18 17 16 38 38 H 1.09002 * 110.49995 * 202.62319 * 19 18 17 39 39 H 1.08994 * 110.60860 * 80.00321 * 19 18 17 40 40 H 1.09000 * 110.68669 * 201.97626 * 23 22 20 41 41 H 1.09004 * 110.29741 * 79.31571 * 23 22 20 42 42 H 1.08998 * 110.90945 * 218.30914 * 24 16 14 43 43 H 1.09000 * 110.90959 * 341.88289 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3966 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8197 -0.0021 12 6 1.8291 -6.1447 -0.0026 13 7 0.8771 -7.2582 -0.0024 14 6 1.3265 -8.5289 -0.0033 15 8 2.5189 -8.7505 -0.0038 16 6 0.3472 -9.6744 -0.0036 17 6 -0.5623 -9.6516 1.2393 18 6 -0.7900 -11.1448 1.5795 19 6 0.5879 -11.7799 1.2685 20 6 1.0617 -11.0472 -0.0046 21 1 2.1456 -10.9322 -0.0170 22 8 0.5987 -11.7781 -1.1533 23 6 0.1671 -10.7916 -2.1287 24 6 -0.5336 -9.7051 -1.2740 25 1 -0.4851 0.8400 0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6855 -3.7148 0.8879 28 1 2.6842 -3.7141 -0.8921 29 1 0.4370 -4.7614 -0.8917 30 1 0.4377 -4.7626 0.8883 31 1 2.4558 -6.2028 0.8873 32 1 2.4556 -6.2020 -0.8926 33 1 -0.0766 -7.0810 -0.0023 34 1 -1.5100 -9.1651 1.0085 35 1 -0.0665 -9.1441 2.0668 36 1 -1.5649 -11.5723 0.9430 37 1 -1.0428 -11.2670 2.6327 38 1 0.4816 -12.8477 1.0772 39 1 1.2838 -11.6076 2.0895 40 1 -0.5330 -11.2324 -2.8384 41 1 1.0282 -10.3735 -2.6502 42 1 -1.5550 -9.9992 -1.0322 43 1 -0.5183 -8.7405 -1.7813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162368076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:34 Heat of formation + Delta-G solvation = -87.403040 kcal Electronic energy + Delta-G solvation = -22254.882545 eV Core-core repulsion = 18913.425256 eV Total energy + Delta-G solvation = -3341.457290 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30688 -38.83033 -36.08206 -35.58104 -34.43356 -32.63431 -31.73601 -29.60184 -28.26971 -27.71523 -25.30353 -23.08173 -22.77919 -21.70286 -21.19842 -21.01491 -19.42140 -17.83763 -16.99843 -16.35991 -16.01109 -15.73353 -15.57120 -15.26056 -15.02689 -14.57219 -14.34068 -14.11067 -13.31943 -13.27986 -13.05382 -13.00391 -12.46505 -12.44952 -11.83985 -11.73496 -11.53787 -11.50761 -11.38709 -11.26364 -11.00433 -10.96603 -10.89624 -10.79204 -10.66724 -10.10799 -9.99476 -9.77048 -9.65984 -9.14253 -8.91468 -6.96740 -5.80266 -3.09295 2.43203 2.98588 3.41632 3.47485 3.49054 3.49751 3.97251 4.12357 4.34286 4.56302 4.60378 4.64825 4.74889 4.80055 4.99395 5.06268 5.14089 5.24762 5.26711 5.29928 5.38373 5.48936 5.50245 5.54581 5.57232 5.58619 5.60282 5.74364 5.81382 5.92006 5.94595 6.00842 6.14297 6.27537 6.37447 6.59357 6.74504 6.78736 7.36558 7.68032 8.05981 8.38640 9.49959 10.06622 10.41278 11.42807 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039339 B = 0.002609 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.591722 B =10728.801959 C =10792.081410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.734 5.734 10 C 0.156 3.844 11 C -0.137 4.137 12 C 0.121 3.879 13 N -0.722 5.722 14 C 0.530 3.470 15 O -0.537 6.537 16 C -0.116 4.116 17 C -0.110 4.110 18 C -0.121 4.121 19 C -0.126 4.126 20 C 0.088 3.912 21 H 0.097 0.903 22 O -0.371 6.371 23 C 0.046 3.954 24 C -0.140 4.140 25 H 0.255 0.745 26 H 0.383 0.617 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.401 0.599 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 -24.597 0.237 24.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.002 4.002 13 N -0.373 5.373 14 C 0.315 3.685 15 O -0.414 6.414 16 C -0.120 4.120 17 C -0.147 4.147 18 C -0.158 4.158 19 C -0.164 4.164 20 C 0.030 3.970 21 H 0.115 0.885 22 O -0.290 6.290 23 C -0.031 4.031 24 C -0.178 4.178 25 H 0.065 0.935 26 H 0.217 0.783 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.235 0.765 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.194 -24.844 0.215 25.049 hybrid contribution -0.355 1.427 -0.032 1.471 sum -3.549 -23.417 0.182 23.685 Atomic orbital electron populations 1.69662 1.05145 1.25606 1.57894 1.24757 0.95561 0.97779 1.02967 0.86097 0.78828 0.83961 0.77208 1.20490 1.21818 1.21812 1.19292 0.91141 0.84093 1.42572 0.91032 1.42345 1.05865 0.99999 1.89619 1.20518 0.93251 0.85177 0.98229 1.21946 0.99582 0.93297 1.02729 1.21396 0.91729 0.84542 1.02550 1.46044 1.10803 1.05599 1.74856 1.20005 0.88961 0.83615 0.75900 1.90699 1.16605 1.84545 1.49531 1.22595 0.95791 0.95082 0.98485 1.22379 0.98661 0.98143 0.95549 1.22474 0.97476 0.94249 1.01600 1.22560 0.97054 1.00656 0.96112 1.23364 0.99186 0.87804 0.86681 0.88492 1.89078 1.83674 1.29815 1.26457 1.23685 0.98268 0.89063 0.92072 1.23219 0.99495 1.00842 0.94227 0.93534 0.78306 0.96034 0.96056 0.91292 0.91270 0.91262 0.91281 0.76477 0.90260 0.90730 0.90905 0.90862 0.90174 0.90342 0.88670 0.91913 0.89094 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -18.53 5.60 -59.91 -0.34 -18.87 16 10 C 0.16 3.08 6.26 -4.04 -0.03 3.05 16 11 C -0.14 -2.03 5.44 -26.73 -0.15 -2.18 16 12 C 0.12 1.60 5.67 -4.04 -0.02 1.58 16 13 N -0.72 -7.97 5.43 -60.30 -0.33 -8.30 16 14 C 0.53 6.48 6.52 -10.98 -0.07 6.41 16 15 O -0.54 -8.65 15.47 5.56 0.09 -8.56 16 16 C -0.12 -1.08 0.75 -153.34 -0.12 -1.20 16 17 C -0.11 -0.82 5.64 -25.23 -0.14 -0.96 16 18 C -0.12 -0.84 6.88 -24.78 -0.17 -1.01 16 19 C -0.13 -1.07 6.49 -25.04 -0.16 -1.23 16 20 C 0.09 0.92 3.85 -25.10 -0.10 0.83 16 21 H 0.10 1.23 6.74 -51.93 -0.35 0.88 16 22 O -0.37 -4.08 11.16 -35.23 -0.39 -4.48 16 23 C 0.05 0.40 7.72 38.21 0.30 0.69 16 24 C -0.14 -1.06 6.19 -24.83 -0.15 -1.22 16 25 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.38 10.04 7.67 -40.82 -0.31 9.73 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.40 3.48 8.47 -40.82 -0.35 3.13 16 34 H 0.08 0.47 7.71 -51.93 -0.40 0.07 16 35 H 0.07 0.60 7.94 -51.93 -0.41 0.19 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 0.56 7.61 -51.93 -0.40 0.16 16 43 H 0.09 0.61 7.85 -51.93 -0.41 0.20 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -33.08 346.28 -8.35 -41.43 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -7.24 Total: 6.27 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -1.06 Total: -2.66 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: 0.06 Total: -54.58 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.31 Total: -13.04 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.08 -8.35 -41.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162368076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.977 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds