Wall clock time and date at job start Tue Mar 31 2020 06:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86789 * 120.00457 * 2 1 4 4 H 1.48504 * 109.47168 * 270.00327 * 3 2 1 5 5 H 1.48500 * 109.47185 * 30.00179 * 3 2 1 6 6 H 1.48496 * 109.47383 * 150.00088 * 3 2 1 7 7 C 1.37876 * 119.99596 * 180.02562 * 2 1 3 8 8 C 1.51271 * 120.84986 * 359.97438 * 7 2 1 9 9 C 1.53236 * 108.53834 * 231.32528 * 8 7 2 10 10 C 1.52960 * 109.40226 * 305.37624 * 9 8 7 11 11 H 1.08998 * 109.41290 * 303.55746 * 10 9 8 12 12 N 1.46905 * 109.41140 * 183.70347 * 10 9 8 13 13 C 1.46893 * 110.99935 * 154.99627 * 12 10 9 14 14 H 1.09007 * 110.43390 * 32.45729 * 13 12 10 15 15 C 1.54894 * 110.48818 * 269.77448 * 13 12 10 16 16 C 1.55013 * 102.75068 * 203.36860 * 15 13 12 17 17 C 1.54263 * 104.14119 * 37.95307 * 16 15 13 18 18 H 1.09002 * 110.03499 * 95.68289 * 17 16 15 19 19 C 1.53001 * 110.03396 * 217.06492 * 17 16 15 20 20 N 1.46497 * 109.47153 * 292.90893 * 19 17 16 21 21 O 1.21801 * 120.00578 * 134.99707 * 20 19 17 22 22 O 1.21806 * 119.99527 * 314.99616 * 20 19 17 23 23 C 1.53876 * 106.63651 * 336.37227 * 17 16 15 24 24 C 1.52957 * 109.81982 * 63.59401 * 10 9 8 25 25 C 1.51265 * 120.85150 * 179.97438 * 7 2 1 26 26 H 0.96999 * 119.99802 * 359.97438 * 1 2 3 27 27 H 1.09005 * 109.63068 * 111.61214 * 8 7 2 28 28 H 1.09000 * 109.63071 * 351.04137 * 8 7 2 29 29 H 1.08994 * 109.48039 * 185.39189 * 9 8 7 30 30 H 1.09001 * 109.48747 * 65.35628 * 9 8 7 31 31 H 1.00899 * 110.99722 * 278.95253 * 12 10 9 32 32 H 1.08997 * 110.75486 * 321.69439 * 15 13 12 33 33 H 1.08996 * 110.75526 * 85.06547 * 15 13 12 34 34 H 1.08996 * 110.51029 * 279.29376 * 16 15 13 35 35 H 1.09002 * 110.51988 * 156.61519 * 16 15 13 36 36 H 1.09002 * 109.46606 * 52.90080 * 19 17 16 37 37 H 1.08993 * 109.47471 * 172.90358 * 19 17 16 38 38 H 1.09002 * 110.03233 * 119.31598 * 23 17 16 39 39 H 1.09001 * 110.03366 * 240.69213 * 23 17 16 40 40 H 1.09004 * 109.47930 * 56.38550 * 24 10 9 41 41 H 1.08997 * 109.48029 * 176.41977 * 24 10 9 42 42 H 1.08997 * 109.62684 * 248.38898 * 25 7 2 43 43 H 1.09000 * 109.62473 * 8.95736 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 6 1.2675 -2.5152 -0.0005 9 6 1.8235 -3.3832 1.1333 10 6 3.3404 -3.5075 0.9810 11 1 3.5737 -3.9113 -0.0042 12 7 3.8624 -4.4111 2.0150 13 6 5.1279 -5.0234 1.5890 14 1 5.6897 -4.3355 0.9570 15 6 4.8620 -6.3548 0.8435 16 6 6.1998 -7.1180 1.0186 17 6 6.6479 -6.7690 2.4528 18 1 6.3313 -7.5505 3.1436 19 6 8.1689 -6.6106 2.5029 20 7 8.8033 -7.9080 2.2570 21 8 9.7484 -7.9888 1.4929 22 8 8.3856 -8.9059 2.8167 23 6 5.9671 -5.4375 2.8154 24 6 3.9913 -2.1317 1.1322 25 6 3.5169 -1.2167 -0.0011 26 1 -0.4850 0.8401 0.0004 27 1 1.4190 -3.0190 -0.9552 28 1 0.2036 -2.3410 0.1598 29 1 1.3711 -4.3737 1.0880 30 1 1.5911 -2.9208 2.0926 31 1 3.9720 -3.9290 2.8946 32 1 4.0417 -6.9010 1.3090 33 1 4.6567 -6.1725 -0.2113 34 1 6.9357 -6.7700 0.2937 35 1 6.0429 -8.1920 0.9186 36 1 8.4855 -5.9007 1.7386 37 1 8.4637 -6.2423 3.4854 38 1 5.3201 -5.5728 3.6821 39 1 6.7202 -4.6785 3.0269 40 1 3.7077 -1.6988 2.0916 41 1 5.0754 -2.2354 1.0863 42 1 3.8770 -1.6000 -0.9558 43 1 3.8982 -0.2081 0.1588 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168971809.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:34 Heat of formation + Delta-G solvation = -38.973924 kcal Electronic energy + Delta-G solvation = -22632.119839 eV Core-core repulsion = 19292.762593 eV Total energy + Delta-G solvation = -3339.357246 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.47954 -39.22531 -37.20125 -36.66694 -34.13353 -32.26635 -30.92796 -29.70150 -28.84362 -27.41294 -25.48500 -23.69129 -21.95444 -21.31061 -20.68995 -20.25686 -19.33330 -18.97608 -18.67247 -17.83597 -16.35587 -15.82174 -15.44043 -14.64080 -14.42829 -14.37048 -13.83244 -13.26730 -13.06517 -12.95617 -12.64081 -12.29577 -12.20618 -11.81962 -11.71918 -11.53919 -11.44662 -11.31551 -11.28842 -11.10373 -11.04572 -10.99578 -10.91798 -10.75846 -10.40553 -10.21581 -9.87003 -9.57893 -8.91897 -8.80255 -8.51669 -7.92355 -6.12776 -4.03774 0.30395 1.45107 3.22268 3.30035 3.31141 3.64218 3.82255 4.13368 4.33279 4.34103 4.39106 4.47435 4.96884 5.05813 5.11768 5.14347 5.26080 5.31616 5.44796 5.56276 5.66768 5.72566 5.78805 5.90836 6.01308 6.06648 6.13079 6.19321 6.43315 6.65725 6.74818 6.82112 6.87669 7.00376 7.15540 7.33268 7.33495 7.51141 7.60628 7.66651 7.82631 7.85743 8.37496 8.95040 9.51394 10.96767 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036806 B = 0.003212 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.564497 B = 8715.445808 C = 9105.606497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.075 3.925 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.486 4.486 8 C 0.009 3.991 9 C -0.092 4.092 10 C 0.100 3.900 11 H 0.064 0.936 12 N -0.682 5.682 13 C 0.082 3.918 14 H 0.052 0.948 15 C -0.107 4.107 16 C -0.131 4.131 17 C -0.098 4.098 18 H 0.104 0.896 19 C -0.010 4.010 20 N -0.014 5.014 21 O -0.171 6.171 22 O -0.160 6.160 23 C -0.117 4.117 24 C -0.132 4.132 25 C -0.017 4.017 26 H 0.264 0.736 27 H 0.002 0.998 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.336 0.664 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.025 0.975 42 H 0.014 0.986 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.513 -10.929 5.902 18.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.128 4.128 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.192 1.192 7 C -0.506 4.506 8 C -0.029 4.029 9 C -0.131 4.131 10 C -0.009 4.009 11 H 0.083 0.917 12 N -0.312 5.312 13 C -0.029 4.029 14 H 0.070 0.930 15 C -0.145 4.145 16 C -0.169 4.169 17 C -0.118 4.118 18 H 0.122 0.878 19 C -0.126 4.126 20 N 0.508 4.492 21 O -0.389 6.389 22 O -0.381 6.381 23 C -0.156 4.156 24 C -0.172 4.172 25 C -0.055 4.055 26 H 0.074 0.926 27 H 0.020 0.980 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.150 0.850 37 H 0.154 0.846 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.033 0.967 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 12.630 -10.637 5.830 17.512 hybrid contribution 1.306 1.645 0.120 2.104 sum 13.936 -8.992 5.950 17.621 Atomic orbital electron populations 1.69838 1.06109 1.26857 1.49956 1.24852 0.94716 0.98498 0.94701 0.86699 0.79885 0.83494 0.78468 1.20443 1.21625 1.19177 1.20047 0.89217 0.91639 1.49651 1.19395 0.98643 0.92828 0.92062 1.21567 0.92430 0.98105 1.00995 1.21537 0.96495 0.89672 0.93196 0.91749 1.60890 1.26022 1.37822 1.06423 1.22341 0.90154 0.95696 0.94686 0.93032 1.22506 0.96058 0.95210 1.00767 1.22605 0.98880 1.01315 0.94078 1.22095 0.88317 1.00897 1.00447 0.87792 1.24919 0.97414 0.82735 1.07580 1.44756 1.00302 1.05374 0.98809 1.94574 1.19306 1.93384 1.31592 1.94552 1.65965 1.28411 1.49209 1.22346 0.99000 0.94344 0.99903 1.22207 0.96147 0.97508 1.01314 1.19752 0.96944 0.95360 0.93487 0.92608 0.97999 0.92432 0.94543 0.93470 0.84613 0.89996 0.91322 0.91559 0.90785 0.85028 0.84636 0.89437 0.91456 0.92972 0.95664 0.96744 0.94962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 12.73 55.43 0.71 -24.71 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 20.75 27.53 -169.99 -4.68 16.07 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.01 6.10 56.52 0.35 -5.66 16 7 C -0.49 -12.57 5.51 -98.92 -0.55 -13.11 16 8 C 0.01 0.21 5.97 -27.48 -0.16 0.05 16 9 C -0.09 -1.91 5.54 -26.63 -0.15 -2.06 16 10 C 0.10 1.78 2.23 -67.75 -0.15 1.63 16 11 H 0.06 1.21 7.86 -51.93 -0.41 0.80 16 12 N -0.68 -9.67 6.07 -98.05 -0.60 -10.26 16 13 C 0.08 0.94 2.92 -66.06 -0.19 0.74 16 14 H 0.05 0.65 7.17 -51.92 -0.37 0.27 16 15 C -0.11 -1.19 6.57 -24.67 -0.16 -1.35 16 16 C -0.13 -1.20 6.18 -25.01 -0.15 -1.36 16 17 C -0.10 -0.76 2.81 -89.50 -0.25 -1.01 16 18 H 0.10 0.83 7.69 -51.93 -0.40 0.43 16 19 C -0.01 -0.07 5.48 -4.04 -0.02 -0.09 16 20 N -0.01 -0.14 4.03 -10.62 -0.04 -0.19 16 21 O -0.17 -2.03 19.22 -29.46 -0.57 -2.60 16 22 O -0.16 -1.87 18.34 -29.46 -0.54 -2.41 16 23 C -0.12 -0.97 5.93 -25.61 -0.15 -1.12 16 24 C -0.13 -2.52 5.18 -26.65 -0.14 -2.65 16 25 C -0.02 -0.39 5.59 -27.51 -0.15 -0.55 16 26 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 27 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 28 H 0.06 1.56 7.07 -51.93 -0.37 1.19 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.34 4.50 8.08 -39.29 -0.32 4.19 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.60 7.77 -51.93 -0.40 0.20 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.13 0.77 7.99 -51.93 -0.41 0.35 16 37 H 0.14 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.73 7.93 -51.93 -0.41 0.31 16 39 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.42 7.42 -51.93 -0.39 0.04 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.03 0.73 4.60 -51.93 -0.24 0.49 16 LS Contribution 336.45 15.07 5.07 5.07 Total: -1.00 -28.47 336.45 -10.09 -38.57 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.11 Total: -0.59 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -2.33 Total: -18.96 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.07 Total: -35.16 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -1.11 Total: -5.01 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.68 Total: 16.07 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.47 -10.09 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168971809.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.407 kcal (2) G-P(sol) polarization free energy of solvation -28.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds