Wall clock time and date at job start Tue Mar 31 2020 06:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99632 * 2 1 4 4 H 1.48501 * 109.47086 * 174.65700 * 3 2 1 5 5 H 1.48496 * 109.47497 * 294.66078 * 3 2 1 6 6 H 1.48505 * 109.47295 * 54.66203 * 3 2 1 7 7 C 1.37874 * 120.00266 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.84886 * 348.92450 * 7 2 1 9 9 C 1.53228 * 108.53250 * 231.32148 * 8 7 2 10 10 C 1.52953 * 109.41806 * 305.36581 * 9 8 7 11 11 H 1.09004 * 109.41361 * 303.49704 * 10 9 8 12 12 N 1.46906 * 109.41439 * 183.71234 * 10 9 8 13 13 C 1.46901 * 110.99834 * 154.99916 * 12 10 9 14 14 H 1.09000 * 110.01955 * 325.05809 * 13 12 10 15 15 C 1.53871 * 110.03368 * 86.45333 * 13 12 10 16 16 C 1.54263 * 106.59838 * 119.28509 * 15 13 12 17 17 C 1.54886 * 104.19860 * 23.60746 * 16 15 13 18 18 H 1.09002 * 110.75545 * 80.56042 * 17 16 15 19 19 C 1.52996 * 110.75854 * 203.74195 * 17 16 15 20 20 N 1.46496 * 109.47406 * 293.54913 * 19 17 16 21 21 O 1.21801 * 120.00207 * 134.99516 * 20 19 17 22 22 O 1.21806 * 119.99931 * 314.99797 * 20 19 17 23 23 C 1.54263 * 110.03093 * 203.62109 * 13 12 10 24 24 C 1.52982 * 109.80589 * 63.58808 * 10 9 8 25 25 C 1.51269 * 120.85046 * 168.89407 * 7 2 1 26 26 H 0.97000 * 120.00383 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.63067 * 111.61002 * 8 7 2 28 28 H 1.09005 * 109.78492 * 351.12457 * 8 7 2 29 29 H 1.09002 * 109.48627 * 65.35100 * 9 8 7 30 30 H 1.09003 * 109.48349 * 185.37383 * 9 8 7 31 31 H 1.00895 * 110.99947 * 278.94886 * 12 10 9 32 32 H 1.09009 * 110.03069 * 238.56879 * 15 13 12 33 33 H 1.08997 * 110.03465 * 359.94726 * 15 13 12 34 34 H 1.09009 * 110.48794 * 142.29017 * 16 15 13 35 35 H 1.09005 * 110.48372 * 264.92867 * 16 15 13 36 36 H 1.09001 * 109.46938 * 53.55074 * 19 17 16 37 37 H 1.08998 * 109.47284 * 173.54548 * 19 17 16 38 38 H 1.08998 * 110.48608 * 335.78049 * 23 13 12 39 39 H 1.09000 * 110.49089 * 98.42777 * 23 13 12 40 40 H 1.08997 * 109.47976 * 176.43355 * 24 10 9 41 41 H 1.08997 * 109.48865 * 56.40259 * 24 10 9 42 42 H 1.08999 * 109.62398 * 248.39528 * 25 7 2 43 43 H 1.08997 * 109.62453 * 8.95863 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7038 1.3495 0.1304 5 1 1.9906 2.3385 -1.2723 6 1 1.7952 2.4514 1.1421 7 6 2.0046 -1.1940 0.0005 8 6 1.2887 -2.5029 0.2506 9 6 2.0324 -3.2615 1.3549 10 6 3.5039 -3.4125 0.9658 11 1 3.5737 -3.9127 -0.0002 12 7 4.1975 -4.2161 1.9813 13 6 5.3796 -4.8770 1.4124 14 1 5.1861 -5.1624 0.3784 15 6 6.5943 -3.9349 1.4807 16 6 7.6515 -4.6415 2.3541 17 6 7.2898 -6.1438 2.2475 18 1 7.6738 -6.5687 1.3201 19 6 7.8212 -6.9165 3.4563 20 7 9.2860 -6.9139 3.4322 21 8 9.9115 -6.6833 4.4515 22 8 9.8784 -7.1423 2.3926 23 6 5.7410 -6.1232 2.2467 24 6 4.1596 -2.0335 0.8728 25 6 3.4960 -1.2286 -0.2496 26 1 -0.4851 0.8400 0.0004 27 1 1.2837 -3.0979 -0.6627 28 1 0.2637 -2.3084 0.5665 29 1 1.9588 -2.7066 2.2902 30 1 1.5867 -4.2482 1.4817 31 1 4.4478 -3.6521 2.7796 32 1 6.9908 -3.7637 0.4798 33 1 6.3065 -2.9869 1.9351 34 1 8.6525 -4.4613 1.9621 35 1 7.5793 -4.3041 3.3881 36 1 7.4721 -6.4416 4.3732 37 1 7.4591 -7.9439 3.4187 38 1 5.3603 -6.0252 3.2633 39 1 5.3479 -7.0245 1.7763 40 1 5.2218 -2.1498 0.6576 41 1 4.0359 -1.5074 1.8194 42 1 3.6953 -1.7055 -1.2093 43 1 3.8902 -0.2125 -0.2539 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168971812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:39 Heat of formation + Delta-G solvation = -35.147923 kcal Electronic energy + Delta-G solvation = -22720.770192 eV Core-core repulsion = 19381.578854 eV Total energy + Delta-G solvation = -3339.191338 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.45867 -39.34872 -37.12222 -36.65183 -34.15488 -32.24535 -30.87493 -29.66919 -28.89938 -27.31592 -25.55509 -23.70465 -21.74376 -21.40501 -20.78806 -20.49411 -19.26342 -18.95534 -18.44645 -17.89022 -16.52030 -16.01119 -15.17584 -14.76083 -14.47784 -14.07834 -13.75093 -13.16569 -13.04430 -12.97079 -12.54657 -12.39839 -12.11800 -12.05545 -11.74874 -11.63929 -11.49896 -11.32838 -11.26673 -11.25845 -11.06876 -10.84440 -10.79823 -10.75816 -10.42443 -10.17460 -9.87204 -9.43811 -8.95527 -8.76903 -8.41917 -7.91253 -6.13415 -4.01854 0.31089 1.46008 3.22530 3.31797 3.33082 3.64810 3.82783 4.12396 4.35443 4.38685 4.44168 4.66382 4.77962 5.12149 5.13711 5.16913 5.24956 5.26975 5.40187 5.54596 5.71257 5.73671 5.84837 5.91780 5.99313 6.05225 6.09746 6.17344 6.43681 6.66523 6.78324 6.82003 6.84880 7.06787 7.16646 7.33775 7.37244 7.51084 7.59734 7.69259 7.81974 7.85420 8.38323 8.95374 9.52772 10.96221 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036307 B = 0.003298 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.018377 B = 8487.671526 C = 8946.135482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.877 3.123 4 H -0.257 1.257 5 H -0.283 1.283 6 H -0.286 1.286 7 C -0.487 4.487 8 C 0.011 3.989 9 C -0.094 4.094 10 C 0.100 3.900 11 H 0.064 0.936 12 N -0.684 5.684 13 C 0.088 3.912 14 H 0.082 0.918 15 C -0.153 4.153 16 C -0.126 4.126 17 C -0.108 4.108 18 H 0.105 0.895 19 C -0.006 4.006 20 N -0.014 5.014 21 O -0.171 6.171 22 O -0.161 6.161 23 C -0.100 4.100 24 C -0.138 4.138 25 C -0.022 4.022 26 H 0.263 0.737 27 H 0.002 0.998 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.337 0.663 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.132 0.868 37 H 0.137 0.863 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.033 0.967 41 H 0.049 0.951 42 H 0.014 0.986 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.081 -12.032 5.946 18.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.127 4.127 3 Si 0.705 3.295 4 H -0.183 1.183 5 H -0.209 1.209 6 H -0.212 1.212 7 C -0.506 4.506 8 C -0.027 4.027 9 C -0.133 4.133 10 C -0.008 4.008 11 H 0.083 0.917 12 N -0.313 5.313 13 C -0.023 4.023 14 H 0.100 0.900 15 C -0.192 4.192 16 C -0.164 4.164 17 C -0.127 4.127 18 H 0.124 0.876 19 C -0.123 4.123 20 N 0.507 4.493 21 O -0.389 6.389 22 O -0.382 6.382 23 C -0.138 4.138 24 C -0.177 4.177 25 C -0.060 4.060 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.155 0.845 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.033 0.967 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 11.687 -12.470 5.902 18.081 hybrid contribution 1.274 1.710 0.010 2.133 sum 12.961 -10.759 5.912 17.852 Atomic orbital electron populations 1.69902 1.06215 1.26793 1.49499 1.24847 0.94606 0.98528 0.94710 0.86783 0.81002 0.83907 0.77809 1.18258 1.20950 1.21245 1.20035 0.90862 0.92050 1.47648 1.19359 0.97295 0.93437 0.92586 1.21599 0.93120 0.98116 1.00455 1.21558 0.94921 0.91262 0.93084 0.91748 1.60828 1.24140 1.36313 1.09982 1.22167 0.88929 0.92774 0.98452 0.90002 1.23064 0.96232 0.99584 1.00320 1.22531 0.99822 0.93132 1.00918 1.22549 0.98281 0.95912 0.95969 0.87639 1.24712 0.75501 1.06880 1.05188 1.44773 1.06783 0.97493 1.00202 1.94571 1.69832 1.51332 1.23180 1.94556 1.72293 1.50898 1.20479 1.22379 0.90304 0.99109 1.02051 1.22363 0.96866 0.97284 1.01198 1.19891 0.96176 0.96319 0.93588 0.92701 0.97957 0.92862 0.93572 0.94579 0.84516 0.91299 0.90459 0.91383 0.91313 0.85000 0.84505 0.90198 0.90577 0.94816 0.93214 0.96730 0.94388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 12.83 55.43 0.71 -24.67 16 2 C 0.08 2.05 5.44 -17.82 -0.10 1.95 16 3 Si 0.88 20.56 27.95 -169.99 -4.75 15.81 16 4 H -0.26 -5.76 5.58 56.52 0.32 -5.45 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.49 -12.57 5.48 -98.92 -0.54 -13.11 16 8 C 0.01 0.27 5.92 -27.49 -0.16 0.11 16 9 C -0.09 -1.93 5.54 -26.64 -0.15 -2.08 16 10 C 0.10 1.77 2.37 -67.74 -0.16 1.61 16 11 H 0.06 1.19 7.44 -51.93 -0.39 0.81 16 12 N -0.68 -9.55 6.01 -98.60 -0.59 -10.15 16 13 C 0.09 0.99 3.22 -66.60 -0.21 0.78 16 14 H 0.08 1.01 7.46 -51.93 -0.39 0.62 16 15 C -0.15 -1.65 5.11 -25.62 -0.13 -1.78 16 16 C -0.13 -1.16 6.10 -25.08 -0.15 -1.31 16 17 C -0.11 -0.83 2.75 -88.63 -0.24 -1.07 16 18 H 0.11 0.85 7.80 -51.93 -0.40 0.44 16 19 C -0.01 -0.04 5.86 -4.05 -0.02 -0.06 16 20 N -0.01 -0.14 4.04 -10.62 -0.04 -0.19 16 21 O -0.17 -2.03 19.22 -29.46 -0.57 -2.59 16 22 O -0.16 -1.90 18.40 -29.46 -0.54 -2.44 16 23 C -0.10 -0.83 5.98 -25.07 -0.15 -0.98 16 24 C -0.14 -2.60 4.69 -26.62 -0.12 -2.72 16 25 C -0.02 -0.49 5.65 -27.49 -0.16 -0.65 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.05 1.44 7.20 -51.93 -0.37 1.06 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.34 4.54 7.95 -39.29 -0.31 4.23 16 32 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 33 H 0.08 0.93 6.02 -51.93 -0.31 0.62 16 34 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.07 0.61 8.01 -51.93 -0.42 0.20 16 36 H 0.13 0.71 8.07 -51.93 -0.42 0.29 16 37 H 0.14 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.65 7.96 -51.93 -0.41 0.24 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.03 0.56 5.62 -51.93 -0.29 0.27 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.04 0.87 4.36 -51.93 -0.23 0.64 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -28.50 331.83 -10.06 -38.56 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.97 Total: -0.01 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -2.31 Total: -19.32 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.08 Total: -35.00 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -1.11 Total: -5.04 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.75 Total: 15.81 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.50 -10.06 -38.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168971812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.408 kcal (2) G-P(sol) polarization free energy of solvation -28.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds