Wall clock time and date at job start Tue Mar 31 2020 06:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48499 * 109.47173 * 174.65507 * 3 2 1 5 5 H 1.48502 * 109.47378 * 294.65869 * 3 2 1 6 6 H 1.48508 * 109.47194 * 54.65661 * 3 2 1 7 7 C 1.37881 * 120.00058 * 179.97438 * 2 1 3 8 8 C 1.51265 * 120.84965 * 168.92561 * 7 2 1 9 9 C 1.53225 * 108.53701 * 128.63268 * 8 7 2 10 10 C 1.52957 * 109.40584 * 54.62722 * 9 8 7 11 11 H 1.09010 * 109.41312 * 56.43501 * 10 9 8 12 12 N 1.46902 * 109.41682 * 176.29580 * 10 9 8 13 13 C 1.46901 * 110.99895 * 205.14057 * 12 10 9 14 14 H 1.08995 * 110.01809 * 325.70365 * 13 12 10 15 15 C 1.53880 * 110.02806 * 87.09364 * 13 12 10 16 16 C 1.54264 * 106.59791 * 119.28433 * 15 13 12 17 17 C 1.54889 * 104.19610 * 23.60755 * 16 15 13 18 18 H 1.09005 * 110.75874 * 80.55688 * 17 16 15 19 19 C 1.53003 * 110.75876 * 203.74225 * 17 16 15 20 20 N 1.46500 * 109.47034 * 293.54844 * 19 17 16 21 21 O 1.21795 * 120.00220 * 44.99852 * 20 19 17 22 22 O 1.21797 * 119.99715 * 224.99195 * 20 19 17 23 23 C 1.54264 * 110.03383 * 204.30738 * 13 12 10 24 24 C 1.52961 * 109.76109 * 296.36997 * 10 9 8 25 25 C 1.51260 * 120.84818 * 348.90772 * 7 2 1 26 26 H 0.97000 * 120.00220 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.62631 * 8.92410 * 8 7 2 28 28 H 1.08995 * 109.78407 * 248.44349 * 8 7 2 29 29 H 1.09005 * 109.48053 * 294.65044 * 9 8 7 30 30 H 1.08999 * 109.48792 * 174.60829 * 9 8 7 31 31 H 1.00894 * 110.99493 * 329.09349 * 12 10 9 32 32 H 1.09006 * 110.02969 * 238.56441 * 15 13 12 33 33 H 1.08994 * 110.03323 * 359.97438 * 15 13 12 34 34 H 1.09004 * 110.48661 * 142.28545 * 16 15 13 35 35 H 1.08999 * 110.48727 * 264.93253 * 16 15 13 36 36 H 1.09005 * 109.46532 * 53.54437 * 19 17 16 37 37 H 1.08996 * 109.47162 * 173.54503 * 19 17 16 38 38 H 1.09002 * 110.48439 * 335.79257 * 23 13 12 39 39 H 1.08997 * 110.48370 * 98.42718 * 23 13 12 40 40 H 1.09004 * 109.48573 * 183.60996 * 24 10 9 41 41 H 1.09004 * 109.47934 * 303.65210 * 24 10 9 42 42 H 1.09001 * 109.63080 * 351.08024 * 25 7 2 43 43 H 1.09006 * 109.62696 * 111.46220 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7039 1.3494 0.1304 5 1 1.9908 2.3385 -1.2724 6 1 1.7952 2.4514 1.1421 7 6 2.0046 -1.1941 0.0005 8 6 3.4961 -1.2287 -0.2489 9 6 4.1593 -2.0329 0.8742 10 6 3.5037 -3.4117 0.9674 11 1 3.5728 -3.9118 0.0012 12 7 4.1972 -4.2145 1.9835 13 6 4.0396 -5.6506 1.7175 14 1 3.0577 -5.8445 1.2858 15 6 5.1418 -6.1330 0.7582 16 6 5.9445 -7.2108 1.5156 17 6 4.9573 -7.7369 2.5869 18 1 4.2661 -8.4598 2.1536 19 6 5.7139 -8.3525 3.7658 20 7 6.4123 -9.5608 3.3203 21 8 7.0367 -9.5527 2.2746 22 8 6.3687 -10.5733 3.9957 23 6 4.2098 -6.4520 3.0246 24 6 2.0324 -3.2595 1.3568 25 6 1.2888 -2.5028 0.2510 26 1 -0.4850 0.8400 -0.0004 27 1 3.8903 -0.2124 -0.2533 28 1 3.6988 -1.7041 -1.2085 29 1 4.0348 -1.5065 1.8205 30 1 5.2216 -2.1493 0.6597 31 1 5.1725 -3.9621 2.0399 32 1 4.6946 -6.5619 -0.1387 33 1 5.7933 -5.3015 0.4896 34 1 6.2372 -8.0141 0.8394 35 1 6.8221 -6.7705 1.9890 36 1 6.4389 -7.6336 4.1474 37 1 5.0082 -8.6109 4.5552 38 1 4.8069 -5.8891 3.7421 39 1 3.2372 -6.7012 3.4487 40 1 1.5861 -4.2457 1.4846 41 1 1.9594 -2.7034 2.2915 42 1 0.2646 -2.3054 0.5676 43 1 1.2813 -3.0968 -0.6630 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168971813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:42 Heat of formation + Delta-G solvation = -34.838643 kcal Electronic energy + Delta-G solvation = -22630.831983 eV Core-core repulsion = 19291.654057 eV Total energy + Delta-G solvation = -3339.177927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.46966 -39.23952 -37.12585 -36.62083 -34.15032 -32.28029 -30.82815 -29.63315 -28.81052 -27.45041 -25.49936 -23.52670 -21.91004 -21.50674 -20.89692 -20.06676 -19.17874 -19.01178 -18.56917 -17.63207 -16.26700 -16.10639 -15.17548 -14.82519 -14.45990 -14.14172 -13.81298 -13.32290 -13.04995 -12.73966 -12.57080 -12.50483 -12.07407 -11.99017 -11.77091 -11.68716 -11.34667 -11.29382 -11.16575 -11.11653 -10.97968 -10.92227 -10.74837 -10.59772 -10.47311 -10.19272 -9.91447 -9.36467 -8.93011 -8.65595 -8.40427 -8.00420 -6.12252 -4.00707 0.30861 1.45776 3.24284 3.33710 3.34657 3.69149 3.84344 4.12750 4.36941 4.39603 4.47681 4.69363 4.81797 5.14658 5.15783 5.18366 5.31124 5.34320 5.46075 5.64510 5.75069 5.83181 5.86170 5.93886 6.02922 6.07276 6.14658 6.19812 6.51655 6.64553 6.77351 6.85571 6.89625 7.07578 7.11195 7.34871 7.41108 7.57059 7.62906 7.72280 7.80677 7.86517 8.39155 8.96242 9.53855 10.97453 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047676 B = 0.003061 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.150860 B = 9144.522772 C = 9353.246734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.076 3.924 3 Si 0.878 3.122 4 H -0.256 1.256 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.486 4.486 8 C -0.023 4.023 9 C -0.107 4.107 10 C 0.101 3.899 11 H 0.033 0.967 12 N -0.684 5.684 13 C 0.086 3.914 14 H 0.083 0.917 15 C -0.155 4.155 16 C -0.114 4.114 17 C -0.107 4.107 18 H 0.091 0.909 19 C -0.006 4.006 20 N -0.016 5.016 21 O -0.154 6.154 22 O -0.177 6.177 23 C -0.098 4.098 24 C -0.092 4.092 25 C 0.010 3.990 26 H 0.263 0.737 27 H 0.040 0.960 28 H 0.014 0.986 29 H 0.057 0.943 30 H 0.027 0.973 31 H 0.333 0.667 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.025 0.975 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.799 -13.443 6.391 18.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.181 1.181 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.505 4.505 8 C -0.061 4.061 9 C -0.146 4.146 10 C -0.008 4.008 11 H 0.051 0.949 12 N -0.314 5.314 13 C -0.025 4.025 14 H 0.101 0.899 15 C -0.194 4.194 16 C -0.152 4.152 17 C -0.127 4.127 18 H 0.110 0.890 19 C -0.123 4.123 20 N 0.505 4.495 21 O -0.376 6.376 22 O -0.393 6.393 23 C -0.137 4.137 24 C -0.130 4.130 25 C -0.028 4.028 26 H 0.073 0.927 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.045 0.955 31 H 0.151 0.849 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 9.712 -12.647 7.114 17.461 hybrid contribution 1.085 0.597 -0.704 1.425 sum 10.797 -12.051 6.410 17.403 Atomic orbital electron populations 1.69902 1.06245 1.26809 1.49505 1.24852 0.94617 0.98572 0.94656 0.86766 0.81065 0.83807 0.77766 1.18138 1.20998 1.21218 1.20013 0.90841 0.92015 1.47644 1.19922 0.96207 0.96428 0.93523 1.21753 0.95813 0.95585 1.01409 1.21458 0.95565 0.92695 0.91037 0.94898 1.60722 1.17623 1.02107 1.50970 1.22163 0.98593 0.88830 0.92913 0.89855 1.22974 0.98147 0.98935 0.99334 1.22507 0.96788 0.98730 0.97136 1.22499 0.97888 0.98753 0.93518 0.89043 1.24721 0.99865 0.85897 1.01804 1.44807 0.99934 1.04404 1.00320 1.94545 1.40290 1.91167 1.11623 1.94569 1.66934 1.24045 1.53727 1.22378 1.00210 0.92457 0.98671 1.21622 0.92980 0.97627 1.00815 1.19375 0.97368 0.93572 0.92484 0.92702 0.94126 0.96767 0.92381 0.95462 0.84890 0.91472 0.91257 0.89846 0.91340 0.84482 0.85010 0.90187 0.90656 0.95636 0.92821 0.92881 0.98124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.47 12.82 55.43 0.71 -24.76 16 2 C 0.08 2.05 5.44 -17.82 -0.10 1.95 16 3 Si 0.88 20.56 27.95 -169.99 -4.75 15.81 16 4 H -0.26 -5.71 5.58 56.52 0.32 -5.39 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.49 -12.64 5.48 -98.93 -0.54 -13.18 16 8 C -0.02 -0.52 5.65 -27.49 -0.16 -0.67 16 9 C -0.11 -2.08 5.24 -26.64 -0.14 -2.21 16 10 C 0.10 1.81 2.23 -67.75 -0.15 1.66 16 11 H 0.03 0.62 7.74 -51.92 -0.40 0.22 16 12 N -0.68 -9.73 6.01 -98.61 -0.59 -10.33 16 13 C 0.09 1.01 3.00 -66.59 -0.20 0.81 16 14 H 0.08 1.12 7.14 -51.93 -0.37 0.75 16 15 C -0.15 -1.62 6.30 -25.61 -0.16 -1.79 16 16 C -0.11 -1.00 5.09 -25.07 -0.13 -1.13 16 17 C -0.11 -0.83 3.03 -88.59 -0.27 -1.10 16 18 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 19 C -0.01 -0.04 5.98 -4.04 -0.02 -0.06 16 20 N -0.02 -0.16 4.23 -10.61 -0.04 -0.21 16 21 O -0.15 -1.76 16.40 -29.46 -0.48 -2.25 16 22 O -0.18 -2.06 19.22 -29.46 -0.57 -2.63 16 23 C -0.10 -0.87 5.99 -25.04 -0.15 -1.02 16 24 C -0.09 -1.91 5.43 -26.63 -0.14 -2.05 16 25 C 0.01 0.24 5.93 -27.48 -0.16 0.08 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.04 0.92 4.36 -51.92 -0.23 0.70 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.03 0.46 8.05 -51.93 -0.42 0.04 16 31 H 0.33 4.32 7.73 -39.30 -0.30 4.02 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.77 7.58 -51.93 -0.39 0.38 16 34 H 0.08 0.79 6.96 -51.93 -0.36 0.43 16 35 H 0.07 0.57 8.01 -51.93 -0.42 0.15 16 36 H 0.14 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.13 0.65 8.11 -51.93 -0.42 0.23 16 38 H 0.08 0.68 7.96 -51.93 -0.41 0.27 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.02 0.49 7.40 -51.93 -0.38 0.10 16 41 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 42 H 0.05 1.44 7.19 -51.93 -0.37 1.07 16 43 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -28.64 332.85 -10.12 -38.76 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.08 Total: -0.71 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.32 Total: -18.72 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.07 Total: -35.29 kcal Atomic # 8 Polarization: -3.82 SS G_CDS: -1.05 Total: -4.87 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.75 Total: 15.81 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.64 -10.12 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168971813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.924 kcal (2) G-P(sol) polarization free energy of solvation -28.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds