Wall clock time and date at job start Tue Mar 31 2020 06:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00019 * 2 1 4 4 H 1.48499 * 109.47173 * 174.65507 * 3 2 1 5 5 H 1.48502 * 109.47378 * 294.65869 * 3 2 1 6 6 H 1.48508 * 109.47194 * 54.65661 * 3 2 1 7 7 C 1.37881 * 120.00058 * 179.97438 * 2 1 3 8 8 C 1.51265 * 120.84965 * 168.92561 * 7 2 1 9 9 C 1.53225 * 108.53701 * 128.63268 * 8 7 2 10 10 C 1.52957 * 109.40584 * 54.62722 * 9 8 7 11 11 H 1.09010 * 109.41312 * 56.43501 * 10 9 8 12 12 N 1.46902 * 109.41682 * 176.29580 * 10 9 8 13 13 C 1.46901 * 110.99895 * 205.14057 * 12 10 9 14 14 H 1.08995 * 110.01809 * 325.70365 * 13 12 10 15 15 C 1.53880 * 110.02806 * 87.09364 * 13 12 10 16 16 C 1.54264 * 106.59791 * 119.28433 * 15 13 12 17 17 C 1.54889 * 104.19610 * 23.60755 * 16 15 13 18 18 H 1.09005 * 110.75874 * 80.55688 * 17 16 15 19 19 C 1.53003 * 110.75876 * 203.74225 * 17 16 15 20 20 N 1.46500 * 109.47034 * 293.54844 * 19 17 16 21 21 O 1.21795 * 120.00220 * 44.99852 * 20 19 17 22 22 O 1.21797 * 119.99715 * 224.99195 * 20 19 17 23 23 C 1.54264 * 110.03383 * 204.30738 * 13 12 10 24 24 C 1.52961 * 109.76109 * 296.36997 * 10 9 8 25 25 C 1.51260 * 120.84818 * 348.90772 * 7 2 1 26 26 H 0.97000 * 120.00220 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.62631 * 8.92410 * 8 7 2 28 28 H 1.08995 * 109.78407 * 248.44349 * 8 7 2 29 29 H 1.09005 * 109.48053 * 294.65044 * 9 8 7 30 30 H 1.08999 * 109.48792 * 174.60829 * 9 8 7 31 31 H 1.00894 * 110.99493 * 329.09349 * 12 10 9 32 32 H 1.09006 * 110.02969 * 238.56441 * 15 13 12 33 33 H 1.08994 * 110.03323 * 359.97438 * 15 13 12 34 34 H 1.09004 * 110.48661 * 142.28545 * 16 15 13 35 35 H 1.08999 * 110.48727 * 264.93253 * 16 15 13 36 36 H 1.09005 * 109.46532 * 53.54437 * 19 17 16 37 37 H 1.08996 * 109.47162 * 173.54503 * 19 17 16 38 38 H 1.09002 * 110.48439 * 335.79257 * 23 13 12 39 39 H 1.08997 * 110.48370 * 98.42718 * 23 13 12 40 40 H 1.09004 * 109.48573 * 183.60996 * 24 10 9 41 41 H 1.09004 * 109.47934 * 303.65210 * 24 10 9 42 42 H 1.09001 * 109.63080 * 351.08024 * 25 7 2 43 43 H 1.09006 * 109.62696 * 111.46220 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7039 1.3494 0.1304 5 1 1.9908 2.3385 -1.2724 6 1 1.7952 2.4514 1.1421 7 6 2.0046 -1.1941 0.0005 8 6 3.4961 -1.2287 -0.2489 9 6 4.1593 -2.0329 0.8742 10 6 3.5037 -3.4117 0.9674 11 1 3.5728 -3.9118 0.0012 12 7 4.1972 -4.2145 1.9835 13 6 4.0396 -5.6506 1.7175 14 1 3.0577 -5.8445 1.2858 15 6 5.1418 -6.1330 0.7582 16 6 5.9445 -7.2108 1.5156 17 6 4.9573 -7.7369 2.5869 18 1 4.2661 -8.4598 2.1536 19 6 5.7139 -8.3525 3.7658 20 7 6.4123 -9.5608 3.3203 21 8 7.0367 -9.5527 2.2746 22 8 6.3687 -10.5733 3.9957 23 6 4.2098 -6.4520 3.0246 24 6 2.0324 -3.2595 1.3568 25 6 1.2888 -2.5028 0.2510 26 1 -0.4850 0.8400 -0.0004 27 1 3.8903 -0.2124 -0.2533 28 1 3.6988 -1.7041 -1.2085 29 1 4.0348 -1.5065 1.8205 30 1 5.2216 -2.1493 0.6597 31 1 5.1725 -3.9621 2.0399 32 1 4.6946 -6.5619 -0.1387 33 1 5.7933 -5.3015 0.4896 34 1 6.2372 -8.0141 0.8394 35 1 6.8221 -6.7705 1.9890 36 1 6.4389 -7.6336 4.1474 37 1 5.0082 -8.6109 4.5552 38 1 4.8069 -5.8891 3.7421 39 1 3.2372 -6.7012 3.4487 40 1 1.5861 -4.2457 1.4846 41 1 1.9594 -2.7034 2.2915 42 1 0.2646 -2.3054 0.5676 43 1 1.2813 -3.0968 -0.6630 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168971813.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:42 Heat of formation + Delta-G solvation = -51.134657 kcal Electronic energy + Delta-G solvation = -22631.538631 eV Core-core repulsion = 19291.654057 eV Total energy + Delta-G solvation = -3339.884575 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19308 -40.21768 -38.51035 -37.44334 -35.50902 -33.72679 -32.05981 -31.42083 -29.67253 -28.74442 -26.71527 -24.25241 -23.69381 -23.14177 -21.66078 -21.04787 -20.78879 -19.73733 -19.28045 -18.33313 -18.03514 -17.15273 -16.43590 -16.06670 -15.89774 -15.16371 -14.94143 -14.71701 -14.39734 -14.21272 -13.90799 -13.75589 -13.61116 -13.08808 -12.83064 -12.72585 -12.62024 -12.55746 -12.24258 -12.15667 -12.09154 -11.98876 -11.87823 -11.82475 -11.78170 -11.59925 -11.51832 -11.18888 -10.74632 -10.55772 -10.37569 -9.21040 -8.17320 -6.09492 -0.53407 0.81863 1.38026 1.42349 1.50734 2.41893 2.99627 3.10257 3.27187 3.36779 3.66259 3.80665 3.98249 4.07554 4.15882 4.25375 4.39088 4.43845 4.54021 4.58661 4.64744 4.67001 4.79787 4.92955 5.00715 5.04430 5.07861 5.10970 5.17257 5.23073 5.25054 5.28398 5.31763 5.38168 5.42096 5.62131 5.64883 5.79742 5.90734 6.27932 6.37593 6.48833 6.66446 6.96735 7.47743 8.94120 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047676 B = 0.003061 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.150860 B = 9144.522772 C = 9353.246734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.016 3.984 3 Si 0.935 3.065 4 H -0.232 1.232 5 H -0.285 1.285 6 H -0.289 1.289 7 C -0.497 4.497 8 C -0.026 4.026 9 C -0.102 4.102 10 C 0.113 3.887 11 H 0.026 0.974 12 N -0.680 5.680 13 C 0.081 3.919 14 H 0.063 0.937 15 C -0.150 4.150 16 C -0.109 4.109 17 C -0.097 4.097 18 H 0.086 0.914 19 C -0.002 4.002 20 N -0.011 5.011 21 O -0.172 6.172 22 O -0.201 6.201 23 C -0.088 4.088 24 C -0.080 4.080 25 C 0.007 3.993 26 H 0.261 0.739 27 H 0.043 0.957 28 H 0.016 0.984 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.346 0.654 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.037 0.963 41 H 0.038 0.962 42 H 0.017 0.983 43 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.362 -13.860 7.616 20.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.181 4.181 3 Si 0.761 3.239 4 H -0.156 1.156 5 H -0.212 1.212 6 H -0.216 1.216 7 C -0.517 4.517 8 C -0.064 4.064 9 C -0.140 4.140 10 C 0.004 3.996 11 H 0.044 0.956 12 N -0.311 5.311 13 C -0.029 4.029 14 H 0.081 0.919 15 C -0.190 4.190 16 C -0.147 4.147 17 C -0.117 4.117 18 H 0.105 0.895 19 C -0.118 4.118 20 N 0.506 4.494 21 O -0.393 6.393 22 O -0.415 6.415 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.031 4.031 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.166 0.834 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.181 0.819 37 H 0.172 0.828 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.035 0.965 43 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges 12.311 -13.098 8.349 19.820 hybrid contribution 0.225 0.671 -1.136 1.338 sum 12.535 -12.427 7.213 19.068 Atomic orbital electron populations 1.70049 1.07978 1.27393 1.51965 1.25696 0.95286 1.02145 0.95001 0.85853 0.81122 0.79620 0.77306 1.15612 1.21175 1.21569 1.20669 0.92922 0.92155 1.45917 1.19938 0.94145 0.97369 0.94946 1.21636 0.97519 0.95366 0.99504 1.21113 0.93863 0.92947 0.91656 0.95581 1.60574 1.18230 1.03034 1.49238 1.22232 0.98077 0.87676 0.94920 0.91871 1.22889 0.97787 0.99348 0.98950 1.22465 0.97087 0.97938 0.97176 1.22355 0.97476 0.98208 0.93636 0.89530 1.24923 1.00590 0.84747 1.01552 1.45251 0.99437 1.04905 0.99760 1.94544 1.41104 1.91428 1.12273 1.94571 1.67683 1.25292 1.53912 1.22262 1.00897 0.92348 0.97185 1.21400 0.94965 0.97243 0.98264 1.19346 0.96168 0.94202 0.93419 0.92965 0.93904 0.96608 0.93071 0.92088 0.83437 0.92316 0.91468 0.90528 0.90182 0.81886 0.82752 0.88871 0.90276 0.94422 0.94272 0.96471 0.99097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.59 12.82 21.45 0.28 -55.31 16 2 C 0.02 0.91 5.44 84.66 0.46 1.37 16 3 Si 0.93 42.27 27.95 68.60 1.92 44.19 16 4 H -0.23 -9.50 5.58 99.48 0.56 -8.94 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 7 C -0.50 -26.06 5.48 -16.18 -0.09 -26.15 16 8 C -0.03 -1.14 5.65 30.10 0.17 -0.97 16 9 C -0.10 -3.68 5.24 30.66 0.16 -3.52 16 10 C 0.11 3.89 2.23 44.89 0.10 3.99 16 11 H 0.03 0.94 7.74 -2.38 -0.02 0.92 16 12 N -0.68 -17.43 6.01 -465.89 -2.80 -20.23 16 13 C 0.08 1.72 3.00 45.64 0.14 1.86 16 14 H 0.06 1.61 7.14 -2.39 -0.02 1.60 16 15 C -0.15 -2.82 6.30 31.32 0.20 -2.63 16 16 C -0.11 -1.62 5.09 31.67 0.16 -1.46 16 17 C -0.10 -1.21 3.03 -9.48 -0.03 -1.24 16 18 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 19 C 0.00 -0.02 5.98 86.38 0.52 0.49 16 20 N -0.01 -0.20 4.23 -187.48 -0.79 -0.99 16 21 O -0.17 -3.62 16.40 18.89 0.31 -3.31 16 22 O -0.20 -4.37 19.22 18.89 0.36 -4.00 16 23 C -0.09 -1.27 5.99 31.69 0.19 -1.08 16 24 C -0.08 -3.32 5.43 30.66 0.17 -3.15 16 25 C 0.01 0.34 5.93 30.11 0.18 0.52 16 26 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.04 1.84 4.36 -2.38 -0.01 1.83 16 28 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.06 1.81 8.05 -2.39 -0.02 1.79 16 31 H 0.35 7.64 7.73 -89.70 -0.69 6.94 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.07 1.30 7.58 -2.39 -0.02 1.28 16 34 H 0.08 1.29 6.96 -2.38 -0.02 1.27 16 35 H 0.08 1.03 8.01 -2.39 -0.02 1.02 16 36 H 0.16 0.85 8.10 -2.38 -0.02 0.83 16 37 H 0.15 0.88 8.11 -2.39 -0.02 0.86 16 38 H 0.09 1.16 7.96 -2.39 -0.02 1.14 16 39 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.04 1.43 7.40 -2.39 -0.02 1.42 16 41 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.02 0.96 7.19 -2.39 -0.02 0.94 16 43 H -0.01 -0.49 8.14 -2.38 -0.02 -0.51 16 Total: -1.00 -63.84 332.85 1.75 -62.09 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.16 Total: 9.54 kcal Atomic # 6 Polarization: -34.29 SS G_CDS: 2.32 Total: -31.96 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -3.32 Total: -76.54 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.67 Total: -7.32 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.92 Total: 44.19 kcal Total: -63.84 1.75 -62.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168971813.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.956 kcal (2) G-P(sol) polarization free energy of solvation -63.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds