Wall clock time and date at job start Tue Mar 31 2020 06:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99979 * 2 1 4 4 H 1.48499 * 109.46889 * 239.99841 * 3 2 1 5 5 H 1.48500 * 109.47361 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46945 * 119.99996 * 3 2 1 7 7 C 1.37871 * 119.99603 * 179.97438 * 2 1 3 8 8 C 1.51266 * 120.84686 * 180.02562 * 7 2 1 9 9 C 1.53241 * 108.48456 * 128.59560 * 8 7 2 10 10 C 1.52960 * 109.40213 * 54.72997 * 9 8 7 11 11 H 1.09006 * 109.40704 * 56.37105 * 10 9 8 12 12 N 1.46899 * 109.41635 * 176.22904 * 10 9 8 13 13 C 1.46900 * 111.00040 * 275.14388 * 12 10 9 14 14 H 1.09003 * 110.01607 * 326.39747 * 13 12 10 15 15 C 1.54268 * 110.03156 * 87.82956 * 13 12 10 16 16 C 1.54895 * 104.19476 * 142.89360 * 15 13 12 17 17 C 1.54961 * 102.77671 * 322.08719 * 16 15 13 18 18 H 1.08997 * 110.47708 * 279.23123 * 17 16 15 19 19 C 1.53004 * 110.53009 * 156.56398 * 17 16 15 20 20 N 1.46493 * 109.46827 * 70.24489 * 19 17 16 21 21 O 1.21799 * 120.00422 * 135.00220 * 20 19 17 22 22 O 1.21803 * 120.00082 * 314.99550 * 20 19 17 23 23 C 1.53869 * 110.03244 * 204.99899 * 13 12 10 24 24 C 1.52956 * 109.76059 * 296.30541 * 10 9 8 25 25 C 1.51272 * 120.85141 * 0.02562 * 7 2 1 26 26 H 0.97006 * 119.99882 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.62746 * 248.34717 * 8 7 2 28 28 H 1.09004 * 109.62795 * 8.72592 * 8 7 2 29 29 H 1.09004 * 109.53580 * 294.71898 * 9 8 7 30 30 H 1.08999 * 109.42989 * 174.68087 * 9 8 7 31 31 H 1.00896 * 111.00000 * 151.18987 * 12 10 9 32 32 H 1.08997 * 110.48788 * 261.57268 * 15 13 12 33 33 H 1.09001 * 110.48482 * 24.21949 * 15 13 12 34 34 H 1.09001 * 110.75082 * 80.37254 * 16 15 13 35 35 H 1.08998 * 110.75665 * 203.74259 * 16 15 13 36 36 H 1.09002 * 109.47083 * 190.23960 * 19 17 16 37 37 H 1.08997 * 109.47051 * 310.24464 * 19 17 16 38 38 H 1.09002 * 110.03268 * 0.02562 * 23 13 12 39 39 H 1.08995 * 110.03391 * 121.38432 * 23 13 12 40 40 H 1.09000 * 109.48512 * 183.61387 * 24 10 9 41 41 H 1.09004 * 109.48090 * 303.63519 * 24 10 9 42 42 H 1.09000 * 109.62570 * 111.65512 * 25 7 2 43 43 H 1.08995 * 109.62312 * 351.07961 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 6 3.5170 -1.2165 0.0011 9 6 3.9889 -2.1300 1.1374 10 6 3.3394 -3.5065 0.9857 11 1 3.5739 -3.9112 0.0011 12 7 3.8603 -4.4090 2.0212 13 6 5.1246 -5.0243 1.5958 14 1 5.1163 -5.1870 0.5180 15 6 6.3107 -4.1178 1.9851 16 6 7.4263 -5.1092 2.3997 17 6 6.6394 -6.2211 3.1385 18 1 6.4228 -5.9186 4.1630 19 6 7.4231 -7.5351 3.1212 20 7 8.5955 -7.4158 3.9914 21 8 8.8743 -8.3150 4.7643 22 8 9.2916 -6.4175 3.9421 23 6 5.3335 -6.3607 2.3292 24 6 1.8224 -3.3820 1.1361 25 6 1.2676 -2.5151 0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 3.8778 -1.6010 -0.9529 28 1 3.8981 -0.2072 0.1568 29 1 3.7030 -1.6968 2.0960 30 1 5.0731 -2.2327 1.0936 31 1 3.1792 -5.1129 2.2634 32 1 6.6298 -3.5196 1.1317 33 1 6.0407 -3.4752 2.8231 34 1 7.9307 -5.5122 1.5216 35 1 8.1394 -4.6298 3.0703 36 1 6.7854 -8.3433 3.4794 37 1 7.7468 -7.7516 2.1031 38 1 4.4965 -6.5530 3.0004 39 1 5.4265 -7.1721 1.6074 40 1 1.3700 -4.3727 1.0914 41 1 1.5889 -2.9188 2.0948 42 1 1.4205 -3.0196 -0.9535 43 1 0.2035 -2.3407 0.1593 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168971814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:45 Heat of formation + Delta-G solvation = -36.610975 kcal Electronic energy + Delta-G solvation = -22704.754416 eV Core-core repulsion = 19365.499636 eV Total energy + Delta-G solvation = -3339.254781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.45996 -39.21192 -37.11135 -36.61145 -34.11920 -32.22551 -31.02247 -29.63237 -28.82234 -27.27500 -25.61333 -23.60591 -21.63493 -21.55219 -20.81435 -20.09582 -19.21422 -18.94642 -18.71374 -17.69098 -16.18991 -15.74503 -15.23294 -14.86556 -14.46440 -14.39054 -13.89478 -13.34782 -13.07309 -12.74600 -12.48653 -12.35248 -12.05940 -11.85856 -11.66277 -11.47447 -11.32074 -11.29043 -11.19794 -11.08542 -10.95124 -10.87017 -10.74764 -10.62048 -10.41829 -10.09278 -9.96368 -9.62806 -8.91890 -8.65022 -8.47408 -8.05368 -6.10682 -4.01060 0.31310 1.45738 3.28928 3.35513 3.36934 3.68986 3.83878 4.16843 4.36588 4.38516 4.43178 4.47682 4.93487 5.16326 5.18325 5.21682 5.30865 5.37811 5.53589 5.62266 5.72823 5.85096 5.89351 5.93044 6.06239 6.16930 6.21529 6.33045 6.53508 6.67287 6.77461 6.82862 6.93946 7.02992 7.06553 7.35192 7.43719 7.54525 7.65859 7.72063 7.75756 7.84988 8.38297 8.96121 9.54472 10.99267 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037769 B = 0.003275 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.164199 B = 8546.941479 C = 9080.504416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.292 1.292 6 H -0.273 1.273 7 C -0.487 4.487 8 C -0.013 4.013 9 C -0.094 4.094 10 C 0.101 3.899 11 H 0.031 0.969 12 N -0.684 5.684 13 C 0.085 3.915 14 H 0.047 0.953 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.098 4.098 18 H 0.093 0.907 19 C -0.008 4.008 20 N -0.016 5.016 21 O -0.178 6.178 22 O -0.150 6.150 23 C -0.115 4.115 24 C -0.109 4.109 25 C 0.012 3.988 26 H 0.264 0.736 27 H 0.013 0.987 28 H 0.024 0.976 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.333 0.667 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.136 0.864 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.025 0.975 41 H 0.057 0.943 42 H 0.000 1.000 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.090 -14.087 4.313 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.127 4.127 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.199 1.199 7 C -0.506 4.506 8 C -0.051 4.051 9 C -0.132 4.132 10 C -0.007 4.007 11 H 0.049 0.951 12 N -0.316 5.316 13 C -0.025 4.025 14 H 0.065 0.935 15 C -0.151 4.151 16 C -0.158 4.158 17 C -0.117 4.117 18 H 0.111 0.889 19 C -0.125 4.125 20 N 0.505 4.495 21 O -0.393 6.393 22 O -0.374 6.374 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.026 4.026 26 H 0.074 0.926 27 H 0.032 0.968 28 H 0.042 0.958 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.152 0.848 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.148 0.852 37 H 0.154 0.846 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.019 0.981 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.572 -13.580 4.211 18.332 hybrid contribution 0.234 0.160 -0.540 0.610 sum 11.806 -13.420 3.671 18.247 Atomic orbital electron populations 1.69827 1.06164 1.27026 1.49961 1.24844 0.94731 0.98574 0.94571 0.86651 0.79395 0.83006 0.78992 1.20105 1.21898 1.19899 1.20024 0.89369 0.91440 1.49810 1.19652 0.96711 0.94778 0.93924 1.21613 0.96634 0.94494 1.00489 1.21514 0.95615 0.93040 0.90541 0.95078 1.60817 1.04936 1.22290 1.43537 1.22166 0.91903 0.91614 0.96821 0.93465 1.22536 0.92993 0.97379 1.02188 1.22751 0.97740 0.95530 0.99732 1.22267 0.95556 0.91356 1.02546 0.88858 1.24801 0.86509 1.04153 0.97054 1.44767 1.03566 0.99918 1.01205 1.94568 1.76996 1.32855 1.34891 1.94558 1.49357 1.20058 1.73397 1.22360 0.95893 0.98302 0.98763 1.21823 0.92826 0.97826 1.02234 1.19351 0.98678 0.92973 0.91591 0.92562 0.96833 0.95773 0.92610 0.94703 0.84812 0.91307 0.89861 0.91483 0.89547 0.85204 0.84603 0.90156 0.91337 0.95646 0.92410 0.98131 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.65 12.73 55.43 0.71 -24.95 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 21.34 26.80 -169.99 -4.56 16.79 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.49 -12.75 5.51 -98.93 -0.55 -13.29 16 8 C -0.01 -0.29 5.60 -27.48 -0.15 -0.44 16 9 C -0.09 -1.87 5.30 -26.63 -0.14 -2.01 16 10 C 0.10 1.84 2.39 -67.76 -0.16 1.67 16 11 H 0.03 0.59 7.43 -51.93 -0.39 0.20 16 12 N -0.68 -9.85 6.11 -98.61 -0.60 -10.45 16 13 C 0.09 0.99 3.24 -66.60 -0.22 0.78 16 14 H 0.05 0.59 7.43 -51.93 -0.39 0.20 16 15 C -0.11 -1.31 4.90 -25.07 -0.12 -1.44 16 16 C -0.12 -1.11 5.31 -24.70 -0.13 -1.24 16 17 C -0.10 -0.78 2.93 -88.92 -0.26 -1.04 16 18 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.01 -0.05 5.82 -4.04 -0.02 -0.08 16 20 N -0.02 -0.16 4.23 -10.62 -0.04 -0.21 16 21 O -0.18 -2.08 19.22 -29.46 -0.57 -2.65 16 22 O -0.15 -1.76 16.63 -29.46 -0.49 -2.25 16 23 C -0.11 -0.94 6.05 -25.61 -0.16 -1.10 16 24 C -0.11 -2.22 5.24 -26.62 -0.14 -2.36 16 25 C 0.01 0.29 5.97 -27.47 -0.16 0.13 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.02 0.55 5.17 -51.93 -0.27 0.28 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.03 0.62 5.75 -51.93 -0.30 0.32 16 31 H 0.33 4.38 7.57 -39.29 -0.30 4.08 16 32 H 0.07 0.84 7.37 -51.93 -0.38 0.46 16 33 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 34 H 0.07 0.56 7.97 -51.93 -0.41 0.15 16 35 H 0.09 0.86 7.04 -51.93 -0.37 0.50 16 36 H 0.13 0.61 8.11 -51.93 -0.42 0.19 16 37 H 0.14 0.64 8.02 -51.93 -0.42 0.23 16 38 H 0.08 0.65 7.47 -51.93 -0.39 0.26 16 39 H 0.07 0.44 7.84 -51.93 -0.41 0.04 16 40 H 0.02 0.46 8.05 -51.93 -0.42 0.04 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 43 H 0.06 1.56 7.07 -51.93 -0.37 1.19 16 LS Contribution 330.12 15.07 4.97 4.97 Total: -1.00 -28.91 330.12 -9.77 -38.69 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.88 Total: -1.47 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -2.31 Total: -18.46 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.06 Total: -35.61 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -1.06 Total: -4.90 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.56 Total: 16.79 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.91 -9.77 -38.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168971814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.078 kcal (2) G-P(sol) polarization free energy of solvation -28.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds