Wall clock time and date at job start Tue Mar 31 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00003 * 2 1 4 4 H 1.48495 * 109.47340 * 240.00572 * 3 2 1 5 5 H 1.48506 * 109.46776 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47128 * 119.99667 * 3 2 1 7 7 C 1.37872 * 120.00038 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.84997 * 359.97438 * 7 2 1 9 9 C 1.53236 * 108.53690 * 128.63179 * 8 7 2 10 10 C 1.52955 * 109.40158 * 54.62535 * 9 8 7 11 11 H 1.09002 * 109.41492 * 56.51212 * 10 9 8 12 12 N 1.46899 * 109.41291 * 176.29490 * 10 9 8 13 13 C 1.46900 * 111.00500 * 205.00215 * 12 10 9 14 14 H 1.09004 * 110.43089 * 36.08580 * 13 12 10 15 15 C 1.54265 * 110.48869 * 273.55003 * 13 12 10 16 16 C 1.53875 * 106.60046 * 217.71036 * 15 13 12 17 17 C 1.54265 * 106.59581 * 359.97438 * 16 15 13 18 18 H 1.09004 * 110.48913 * 264.80471 * 17 16 15 19 19 C 1.52998 * 110.48618 * 142.28923 * 17 16 15 20 20 N 1.46508 * 109.47100 * 66.45280 * 19 17 16 21 21 O 1.21798 * 119.99544 * 44.99843 * 20 19 17 22 22 O 1.21797 * 119.99643 * 225.00034 * 20 19 17 23 23 C 1.54889 * 104.19756 * 23.61334 * 17 16 15 24 24 C 1.52958 * 109.82348 * 296.40231 * 10 9 8 25 25 C 1.51275 * 120.85100 * 179.97438 * 7 2 1 26 26 H 0.97005 * 120.00185 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.62523 * 8.91967 * 8 7 2 28 28 H 1.08996 * 109.78786 * 248.44094 * 8 7 2 29 29 H 1.08988 * 109.48104 * 174.60893 * 9 8 7 30 30 H 1.09004 * 109.47964 * 294.65371 * 9 8 7 31 31 H 1.00901 * 110.99817 * 81.04720 * 12 10 9 32 32 H 1.09003 * 110.02876 * 336.99195 * 15 13 12 33 33 H 1.08995 * 110.03260 * 98.37008 * 15 13 12 34 34 H 1.08998 * 110.03308 * 119.28176 * 16 15 13 35 35 H 1.08994 * 110.02856 * 240.71485 * 16 15 13 36 36 H 1.09001 * 109.47453 * 186.45011 * 19 17 16 37 37 H 1.09004 * 109.47261 * 306.45264 * 19 17 16 38 38 H 1.09006 * 110.75256 * 203.74384 * 23 17 16 39 39 H 1.08990 * 110.76051 * 80.37186 * 23 17 16 40 40 H 1.09002 * 109.48188 * 303.62618 * 24 10 9 41 41 H 1.08993 * 109.49457 * 183.58630 * 24 10 9 42 42 H 1.09003 * 109.62312 * 351.08228 * 25 7 2 43 43 H 1.08999 * 109.62412 * 111.65206 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8221 -3.3821 -1.1359 10 6 3.3392 -3.5065 -0.9858 11 1 3.5739 -3.9122 -0.0017 12 7 3.8599 -4.4091 -2.0213 13 6 5.1261 -5.0217 -1.5976 14 1 5.1102 -5.2266 -0.5271 15 6 6.3150 -4.1057 -1.9543 16 6 7.4633 -5.0288 -2.3982 17 6 6.9323 -6.4735 -2.2952 18 1 7.2116 -6.9154 -1.3387 19 6 7.4634 -7.3229 -3.4515 20 7 8.9142 -7.4772 -3.3180 21 8 9.4007 -7.7470 -2.2345 22 8 9.6337 -7.3356 -4.2905 23 6 5.3943 -6.3210 -2.3965 24 6 3.9899 -2.1305 -1.1369 25 6 3.5171 -1.2165 -0.0011 26 1 -0.4851 0.8401 0.0004 27 1 0.2035 -2.3408 -0.1593 28 1 1.4175 -3.0211 0.9531 29 1 1.3699 -4.3727 -1.0908 30 1 1.5884 -2.9187 -2.0945 31 1 3.9682 -3.9263 -2.9006 32 1 6.0388 -3.4354 -2.7683 33 1 6.6161 -3.5275 -1.0807 34 1 7.7444 -4.8064 -3.4276 35 1 8.3222 -4.8992 -1.7398 36 1 6.9901 -8.3045 -3.4287 37 1 7.2358 -6.8318 -4.3977 38 1 4.8907 -7.1700 -1.9340 39 1 5.0850 -6.2061 -3.4352 40 1 3.7048 -1.6968 -2.0954 41 1 5.0740 -2.2340 -1.0927 42 1 3.8981 -0.2077 -0.1602 43 1 3.8778 -1.6009 0.9529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168971815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:48 Heat of formation + Delta-G solvation = -40.312814 kcal Electronic energy + Delta-G solvation = -22681.325873 eV Core-core repulsion = 19341.910569 eV Total energy + Delta-G solvation = -3339.415304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.47209 -39.31468 -37.15471 -36.66337 -34.17397 -32.25121 -30.90370 -29.66356 -28.90297 -27.33550 -25.53736 -23.69111 -21.73502 -21.37612 -20.90450 -20.43705 -19.29070 -18.96725 -18.38222 -17.94943 -16.54559 -16.01710 -15.22964 -14.77534 -14.44444 -13.97030 -13.56580 -13.31239 -13.03573 -12.99008 -12.65710 -12.40590 -12.06768 -12.02878 -11.74739 -11.63881 -11.49399 -11.32014 -11.25866 -11.24797 -11.04286 -10.86535 -10.78172 -10.75193 -10.42744 -10.25947 -9.87239 -9.76318 -8.92140 -8.76094 -8.50628 -7.94994 -6.12603 -4.03379 0.30416 1.45279 3.24553 3.32018 3.32709 3.63513 3.82749 4.10324 4.35096 4.37545 4.42572 4.69200 4.74597 5.11273 5.13347 5.15079 5.22003 5.26247 5.40279 5.55054 5.70329 5.74454 5.82453 5.87218 6.00174 6.04213 6.07621 6.17586 6.41931 6.66127 6.74133 6.81826 6.85529 6.96056 7.14964 7.33136 7.33592 7.50347 7.59594 7.66310 7.82127 7.85723 8.37489 8.95064 9.51981 10.97148 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037379 B = 0.003251 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.905735 B = 8610.549665 C = 9084.463507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.488 4.488 8 C 0.009 3.991 9 C -0.094 4.094 10 C 0.101 3.899 11 H 0.065 0.935 12 N -0.682 5.682 13 C 0.089 3.911 14 H 0.085 0.915 15 C -0.150 4.150 16 C -0.127 4.127 17 C -0.106 4.106 18 H 0.105 0.895 19 C -0.007 4.007 20 N -0.014 5.014 21 O -0.160 6.160 22 O -0.172 6.172 23 C -0.100 4.100 24 C -0.137 4.137 25 C -0.007 4.007 26 H 0.265 0.735 27 H 0.057 0.943 28 H 0.002 0.998 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.337 0.663 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.138 0.862 37 H 0.132 0.868 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.033 0.967 42 H 0.022 0.978 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.172 -12.662 -6.456 18.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.201 1.201 7 C -0.508 4.508 8 C -0.029 4.029 9 C -0.132 4.132 10 C -0.008 4.008 11 H 0.083 0.917 12 N -0.310 5.310 13 C -0.022 4.022 14 H 0.103 0.897 15 C -0.190 4.190 16 C -0.165 4.165 17 C -0.126 4.126 18 H 0.123 0.877 19 C -0.123 4.123 20 N 0.507 4.493 21 O -0.381 6.381 22 O -0.390 6.390 23 C -0.139 4.139 24 C -0.176 4.176 25 C -0.046 4.046 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.020 0.980 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.155 0.845 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.040 0.960 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 10.810 -12.995 -6.354 18.058 hybrid contribution 1.369 1.739 -0.219 2.224 sum 12.179 -11.256 -6.573 17.839 Atomic orbital electron populations 1.69822 1.06118 1.27002 1.49815 1.24838 0.94721 0.98473 0.94655 0.86679 0.79403 0.83222 0.78857 1.20158 1.21825 1.20101 1.20033 0.89197 0.91646 1.49882 1.19381 0.98646 0.92803 0.92035 1.21584 0.92504 0.98083 1.01039 1.21545 0.96399 0.89855 0.93000 0.91716 1.60783 1.25865 1.37882 1.06508 1.22389 0.87977 0.92588 0.99283 0.89679 1.23009 0.95806 0.98337 1.01827 1.22296 0.99182 0.93220 1.01769 1.22398 0.97954 0.95341 0.96871 0.87672 1.24769 0.76142 1.06315 1.05102 1.44781 1.06645 0.97569 1.00290 1.94556 1.79453 1.49558 1.14571 1.94570 1.61186 1.53695 1.29519 1.22480 0.90561 0.99030 1.01832 1.22344 0.96803 0.97387 1.01112 1.19575 0.96890 0.94445 0.93642 0.92537 0.92456 0.97992 0.94574 0.93479 0.84468 0.91184 0.91061 0.91821 0.91181 0.84477 0.85041 0.90295 0.90490 0.93068 0.94805 0.95997 0.96577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 12.73 55.43 0.71 -24.76 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 21.14 26.80 -169.99 -4.56 16.58 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.49 -12.64 5.51 -98.92 -0.55 -13.18 16 8 C 0.01 0.23 5.97 -27.48 -0.16 0.06 16 9 C -0.09 -1.92 5.54 -26.63 -0.15 -2.07 16 10 C 0.10 1.78 2.36 -67.76 -0.16 1.62 16 11 H 0.06 1.19 7.47 -51.93 -0.39 0.80 16 12 N -0.68 -9.53 6.12 -98.06 -0.60 -10.13 16 13 C 0.09 1.00 3.16 -66.07 -0.21 0.79 16 14 H 0.09 1.04 7.51 -51.93 -0.39 0.65 16 15 C -0.15 -1.61 4.82 -25.61 -0.12 -1.73 16 16 C -0.13 -1.15 6.18 -25.61 -0.16 -1.31 16 17 C -0.11 -0.81 2.73 -88.96 -0.24 -1.05 16 18 H 0.11 0.84 7.76 -51.93 -0.40 0.44 16 19 C -0.01 -0.04 5.74 -4.04 -0.02 -0.07 16 20 N -0.01 -0.15 4.03 -10.61 -0.04 -0.19 16 21 O -0.16 -1.88 18.38 -29.46 -0.54 -2.42 16 22 O -0.17 -2.03 19.22 -29.46 -0.57 -2.59 16 23 C -0.10 -0.83 6.00 -24.75 -0.15 -0.98 16 24 C -0.14 -2.58 5.05 -26.62 -0.13 -2.72 16 25 C -0.01 -0.17 5.60 -27.47 -0.15 -0.32 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 27 H 0.06 1.55 7.07 -51.93 -0.37 1.18 16 28 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 29 H 0.04 0.70 8.14 -51.94 -0.42 0.28 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.34 4.54 7.90 -39.29 -0.31 4.23 16 32 H 0.07 0.78 7.53 -51.93 -0.39 0.39 16 33 H 0.07 0.84 7.38 -51.93 -0.38 0.45 16 34 H 0.06 0.57 7.77 -51.93 -0.40 0.16 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.14 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.13 0.69 8.02 -51.93 -0.42 0.28 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.03 0.56 5.64 -51.93 -0.29 0.27 16 42 H 0.02 0.49 5.17 -51.93 -0.27 0.22 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 333.46 15.07 5.03 5.03 Total: -1.00 -28.50 333.46 -9.83 -38.33 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.95 Total: -0.84 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -2.31 Total: -19.01 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.06 Total: -35.07 kcal Atomic # 8 Polarization: -3.91 SS G_CDS: -1.11 Total: -5.02 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.56 Total: 16.58 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.50 -9.83 -38.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168971815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.983 kcal (2) G-P(sol) polarization free energy of solvation -28.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds