Wall clock time and date at job start Tue Mar 31 2020 06:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00003 * 2 1 4 4 H 1.48495 * 109.47340 * 240.00572 * 3 2 1 5 5 H 1.48506 * 109.46776 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47128 * 119.99667 * 3 2 1 7 7 C 1.37872 * 120.00038 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.84997 * 359.97438 * 7 2 1 9 9 C 1.53236 * 108.53690 * 128.63179 * 8 7 2 10 10 C 1.52955 * 109.40158 * 54.62535 * 9 8 7 11 11 H 1.09002 * 109.41492 * 56.51212 * 10 9 8 12 12 N 1.46899 * 109.41291 * 176.29490 * 10 9 8 13 13 C 1.46900 * 111.00500 * 205.00215 * 12 10 9 14 14 H 1.09004 * 110.43089 * 36.08580 * 13 12 10 15 15 C 1.54265 * 110.48869 * 273.55003 * 13 12 10 16 16 C 1.53875 * 106.60046 * 217.71036 * 15 13 12 17 17 C 1.54265 * 106.59581 * 359.97438 * 16 15 13 18 18 H 1.09004 * 110.48913 * 264.80471 * 17 16 15 19 19 C 1.52998 * 110.48618 * 142.28923 * 17 16 15 20 20 N 1.46508 * 109.47100 * 66.45280 * 19 17 16 21 21 O 1.21798 * 119.99544 * 44.99843 * 20 19 17 22 22 O 1.21797 * 119.99643 * 225.00034 * 20 19 17 23 23 C 1.54889 * 104.19756 * 23.61334 * 17 16 15 24 24 C 1.52958 * 109.82348 * 296.40231 * 10 9 8 25 25 C 1.51275 * 120.85100 * 179.97438 * 7 2 1 26 26 H 0.97005 * 120.00185 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.62523 * 8.91967 * 8 7 2 28 28 H 1.08996 * 109.78786 * 248.44094 * 8 7 2 29 29 H 1.08988 * 109.48104 * 174.60893 * 9 8 7 30 30 H 1.09004 * 109.47964 * 294.65371 * 9 8 7 31 31 H 1.00901 * 110.99817 * 81.04720 * 12 10 9 32 32 H 1.09003 * 110.02876 * 336.99195 * 15 13 12 33 33 H 1.08995 * 110.03260 * 98.37008 * 15 13 12 34 34 H 1.08998 * 110.03308 * 119.28176 * 16 15 13 35 35 H 1.08994 * 110.02856 * 240.71485 * 16 15 13 36 36 H 1.09001 * 109.47453 * 186.45011 * 19 17 16 37 37 H 1.09004 * 109.47261 * 306.45264 * 19 17 16 38 38 H 1.09006 * 110.75256 * 203.74384 * 23 17 16 39 39 H 1.08990 * 110.76051 * 80.37186 * 23 17 16 40 40 H 1.09002 * 109.48188 * 303.62618 * 24 10 9 41 41 H 1.08993 * 109.49457 * 183.58630 * 24 10 9 42 42 H 1.09003 * 109.62312 * 351.08228 * 25 7 2 43 43 H 1.08999 * 109.62412 * 111.65206 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8221 -3.3821 -1.1359 10 6 3.3392 -3.5065 -0.9858 11 1 3.5739 -3.9122 -0.0017 12 7 3.8599 -4.4091 -2.0213 13 6 5.1261 -5.0217 -1.5976 14 1 5.1102 -5.2266 -0.5271 15 6 6.3150 -4.1057 -1.9543 16 6 7.4633 -5.0288 -2.3982 17 6 6.9323 -6.4735 -2.2952 18 1 7.2116 -6.9154 -1.3387 19 6 7.4634 -7.3229 -3.4515 20 7 8.9142 -7.4772 -3.3180 21 8 9.4007 -7.7470 -2.2345 22 8 9.6337 -7.3356 -4.2905 23 6 5.3943 -6.3210 -2.3965 24 6 3.9899 -2.1305 -1.1369 25 6 3.5171 -1.2165 -0.0011 26 1 -0.4851 0.8401 0.0004 27 1 0.2035 -2.3408 -0.1593 28 1 1.4175 -3.0211 0.9531 29 1 1.3699 -4.3727 -1.0908 30 1 1.5884 -2.9187 -2.0945 31 1 3.9682 -3.9263 -2.9006 32 1 6.0388 -3.4354 -2.7683 33 1 6.6161 -3.5275 -1.0807 34 1 7.7444 -4.8064 -3.4276 35 1 8.3222 -4.8992 -1.7398 36 1 6.9901 -8.3045 -3.4287 37 1 7.2358 -6.8318 -4.3977 38 1 4.8907 -7.1700 -1.9340 39 1 5.0850 -6.2061 -3.4352 40 1 3.7048 -1.6968 -2.0954 41 1 5.0740 -2.2340 -1.0927 42 1 3.8981 -0.2077 -0.1602 43 1 3.8778 -1.6009 0.9529 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168971815.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:47 Heat of formation + Delta-G solvation = -56.616069 kcal Electronic energy + Delta-G solvation = -22682.032836 eV Core-core repulsion = 19341.910569 eV Total energy + Delta-G solvation = -3340.122267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.19655 -40.28597 -38.51625 -37.46789 -35.55532 -33.67441 -32.14857 -31.38485 -29.79725 -28.60868 -26.74806 -24.43993 -23.46012 -23.09366 -21.83998 -21.23166 -20.74226 -19.70830 -19.11566 -18.62799 -18.12561 -17.08917 -16.44521 -16.22026 -15.93598 -14.90396 -14.79461 -14.53610 -14.41340 -14.19029 -14.00910 -13.82288 -13.53641 -13.15120 -12.88998 -12.76378 -12.59000 -12.53656 -12.45630 -12.15553 -12.08851 -12.06076 -11.99421 -11.94565 -11.73454 -11.65174 -11.58396 -11.45648 -10.75334 -10.56321 -10.51866 -9.18201 -8.18203 -6.11656 -0.54952 0.81786 1.35753 1.37070 1.45043 2.38002 2.99526 3.07881 3.19669 3.37718 3.70015 3.79633 3.93639 4.00729 4.10881 4.27487 4.36095 4.44017 4.48701 4.54140 4.57512 4.62453 4.74819 4.86548 4.96345 5.04037 5.05115 5.08394 5.11193 5.18758 5.20444 5.26333 5.29192 5.32426 5.44671 5.57595 5.63873 5.78611 5.86527 6.27140 6.35160 6.45861 6.60762 6.95847 7.45971 8.93026 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.037379 B = 0.003251 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.905735 B = 8610.549665 C = 9084.463507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.019 3.981 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.498 4.498 8 C 0.005 3.995 9 C -0.083 4.083 10 C 0.114 3.886 11 H 0.061 0.939 12 N -0.677 5.677 13 C 0.084 3.916 14 H 0.077 0.923 15 C -0.148 4.148 16 C -0.124 4.124 17 C -0.096 4.096 18 H 0.103 0.897 19 C -0.004 4.004 20 N -0.009 5.009 21 O -0.184 6.184 22 O -0.194 6.194 23 C -0.088 4.088 24 C -0.129 4.129 25 C -0.013 4.013 26 H 0.262 0.738 27 H 0.022 0.978 28 H -0.003 1.003 29 H 0.047 0.953 30 H 0.034 0.966 31 H 0.343 0.657 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.169 0.831 37 H 0.151 0.849 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.021 0.979 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.933 -13.889 -7.607 21.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.178 4.178 3 Si 0.769 3.231 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.517 4.517 8 C -0.033 4.033 9 C -0.122 4.122 10 C 0.004 3.996 11 H 0.079 0.921 12 N -0.305 5.305 13 C -0.027 4.027 14 H 0.095 0.905 15 C -0.187 4.187 16 C -0.162 4.162 17 C -0.115 4.115 18 H 0.121 0.879 19 C -0.119 4.119 20 N 0.509 4.491 21 O -0.404 6.404 22 O -0.410 6.410 23 C -0.127 4.127 24 C -0.168 4.168 25 C -0.051 4.051 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.015 0.985 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.162 0.838 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.186 0.814 37 H 0.169 0.831 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.039 0.961 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 12.611 -14.239 -7.508 20.449 hybrid contribution 0.785 2.063 0.177 2.214 sum 13.396 -12.176 -7.331 19.531 Atomic orbital electron populations 1.69968 1.07640 1.27418 1.52286 1.25607 0.95347 1.01711 0.95172 0.85819 0.78314 0.79646 0.79327 1.19101 1.22156 1.19376 1.20683 0.91284 0.91892 1.47830 1.19355 0.96864 0.93630 0.93440 1.21382 0.94887 0.97482 0.98408 1.21218 0.94229 0.90071 0.94062 0.92118 1.60669 1.27688 1.36543 1.05610 1.22482 0.86747 0.93984 0.99465 0.90514 1.22925 0.96122 0.98400 1.01246 1.22251 0.98245 0.93896 1.01805 1.22268 0.97414 0.94494 0.97368 0.87889 1.24999 0.73583 1.07977 1.05368 1.45254 1.07793 0.96454 0.99615 1.94557 1.80369 1.50460 1.14971 1.94568 1.62344 1.54409 1.29674 1.22378 0.90785 0.97460 1.02062 1.22244 0.98514 0.97025 0.99000 1.19629 0.94628 0.95502 0.95336 0.92880 0.95956 0.98478 0.93432 0.94682 0.83790 0.91348 0.92266 0.91253 0.92052 0.81380 0.83103 0.89308 0.89245 0.93757 0.92047 0.96061 0.96253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 12.73 21.45 0.27 -54.86 16 2 C 0.02 1.07 5.46 84.65 0.46 1.53 16 3 Si 0.94 43.53 26.80 68.60 1.84 45.37 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.50 -25.92 5.51 -16.17 -0.09 -26.01 16 8 C 0.01 0.25 5.97 30.11 0.18 0.43 16 9 C -0.08 -3.37 5.54 30.66 0.17 -3.20 16 10 C 0.11 3.82 2.36 44.89 0.11 3.92 16 11 H 0.06 2.12 7.47 -2.39 -0.02 2.10 16 12 N -0.68 -17.03 6.12 -464.17 -2.84 -19.87 16 13 C 0.08 1.64 3.16 45.98 0.15 1.78 16 14 H 0.08 1.67 7.51 -2.38 -0.02 1.66 16 15 C -0.15 -2.76 4.82 31.32 0.15 -2.61 16 16 C -0.12 -1.92 6.18 31.32 0.19 -1.72 16 17 C -0.10 -1.14 2.73 -9.72 -0.03 -1.16 16 18 H 0.10 1.34 7.76 -2.39 -0.02 1.32 16 19 C 0.00 -0.03 5.74 86.38 0.50 0.46 16 20 N -0.01 -0.16 4.03 -187.47 -0.76 -0.91 16 21 O -0.18 -4.03 18.38 18.89 0.35 -3.68 16 22 O -0.19 -4.21 19.22 18.89 0.36 -3.85 16 23 C -0.09 -1.12 6.00 31.88 0.19 -0.92 16 24 C -0.13 -4.59 5.05 30.67 0.15 -4.43 16 25 C -0.01 -0.56 5.60 30.12 0.17 -0.39 16 26 H 0.26 14.79 8.31 -92.70 -0.77 14.02 16 27 H 0.02 1.24 7.07 -2.39 -0.02 1.22 16 28 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.03 1.48 8.14 -2.38 -0.02 1.47 16 31 H 0.34 8.19 7.90 -89.69 -0.71 7.49 16 32 H 0.07 1.32 7.53 -2.39 -0.02 1.30 16 33 H 0.06 1.25 7.38 -2.39 -0.02 1.24 16 34 H 0.07 1.02 7.77 -2.39 -0.02 1.00 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.17 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.15 0.91 8.02 -2.38 -0.02 0.89 16 38 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 39 H 0.09 0.97 8.06 -2.39 -0.02 0.95 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.87 5.64 -2.39 -0.01 1.85 16 42 H 0.02 0.92 5.17 -2.39 -0.01 0.91 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -63.06 333.46 1.82 -61.24 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 0.30 Total: 8.89 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 2.30 Total: -32.32 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -3.32 Total: -75.64 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.71 Total: -7.54 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.84 Total: 45.37 kcal Total: -63.06 1.82 -61.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168971815.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.623 kcal (2) G-P(sol) polarization free energy of solvation -63.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds