Wall clock time and date at job start Tue Mar 31 2020 06:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99734 * 2 1 4 4 H 1.48501 * 109.46904 * 174.63899 * 3 2 1 5 5 H 1.48493 * 109.47090 * 294.64182 * 3 2 1 6 6 H 1.48499 * 109.46869 * 54.64311 * 3 2 1 7 7 C 1.37878 * 120.00360 * 180.02562 * 2 1 3 8 8 C 1.51269 * 120.85330 * 164.54064 * 7 2 1 9 9 C 1.53228 * 108.53365 * 231.36953 * 8 7 2 10 10 C 1.52962 * 109.40677 * 305.36616 * 9 8 7 11 11 H 1.08994 * 109.41153 * 303.49957 * 10 9 8 12 12 N 1.46890 * 109.41423 * 183.70723 * 10 9 8 13 13 C 1.46905 * 111.00168 * 84.64854 * 12 10 9 14 14 H 1.09000 * 110.66904 * 34.29871 * 13 12 10 15 15 C 1.54885 * 110.75623 * 271.06577 * 13 12 10 16 16 C 1.54474 * 104.09794 * 203.89179 * 15 13 12 17 17 C 1.53877 * 106.68574 * 23.34063 * 16 15 13 18 18 H 1.08998 * 110.07424 * 240.85548 * 17 16 15 19 19 C 1.52997 * 110.03160 * 119.44141 * 17 16 15 20 20 N 1.46508 * 109.46895 * 67.83211 * 19 17 16 21 21 O 1.21796 * 119.99747 * 134.99669 * 20 19 17 22 22 O 1.21800 * 120.00192 * 315.00458 * 20 19 17 23 23 C 1.54264 * 106.59558 * 0.16152 * 17 16 15 24 24 C 1.52962 * 109.81305 * 63.60202 * 10 9 8 25 25 C 1.51306 * 120.84057 * 344.56150 * 7 2 1 26 26 H 0.96993 * 120.00335 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.62571 * 111.65354 * 8 7 2 28 28 H 1.08999 * 109.62084 * 351.08172 * 8 7 2 29 29 H 1.09004 * 109.47960 * 185.39245 * 9 8 7 30 30 H 1.08994 * 109.49599 * 65.35898 * 9 8 7 31 31 H 1.00899 * 111.00312 * 320.69608 * 12 10 9 32 32 H 1.08993 * 110.48475 * 322.41580 * 15 13 12 33 33 H 1.09000 * 110.48718 * 85.06256 * 15 13 12 34 34 H 1.09004 * 109.85537 * 264.10598 * 16 15 13 35 35 H 1.08999 * 110.16043 * 142.74940 * 16 15 13 36 36 H 1.08996 * 109.47198 * 187.83413 * 19 17 16 37 37 H 1.09002 * 109.47437 * 307.83971 * 19 17 16 38 38 H 1.09006 * 110.48283 * 217.70877 * 23 17 16 39 39 H 1.09002 * 110.59938 * 95.12372 * 23 17 16 40 40 H 1.08999 * 109.48034 * 56.37946 * 24 10 9 41 41 H 1.08992 * 109.48435 * 176.40647 * 24 10 9 42 42 H 1.08997 * 109.64201 * 8.92382 * 25 7 2 43 43 H 1.08997 * 109.62253 * 248.34585 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3495 0.1308 5 1 1.9910 2.3383 -1.2725 6 1 1.7949 2.4515 1.1419 7 6 2.0046 -1.1940 -0.0005 8 6 3.4764 -1.2398 -0.3467 9 6 3.6895 -2.3038 -1.4285 10 6 3.1128 -3.6374 -0.9503 11 1 3.5740 -3.9122 -0.0017 12 7 3.3952 -4.6775 -1.9483 13 6 4.7344 -5.2478 -1.7500 14 1 4.9853 -5.2810 -0.6897 15 6 5.7962 -4.4434 -2.5403 16 6 6.9506 -5.4483 -2.7495 17 6 6.3361 -6.8552 -2.6455 18 1 6.7920 -7.4025 -1.8205 19 6 6.5434 -7.6158 -3.9567 20 7 7.9695 -7.8994 -4.1365 21 8 8.3298 -9.0063 -4.4948 22 8 8.7947 -7.0282 -3.9277 23 6 4.8290 -6.6592 -2.3809 24 6 1.6001 -3.5106 -0.7622 25 6 1.3081 -2.4921 0.3447 26 1 -0.4850 0.8400 0.0004 27 1 4.0534 -1.4994 0.5409 28 1 3.7946 -0.2672 -0.7221 29 1 4.7563 -2.4175 -1.6215 30 1 3.1849 -1.9972 -2.3447 31 1 3.2907 -4.3176 -2.8852 32 1 5.3939 -4.1216 -3.5007 33 1 6.1341 -3.5848 -1.9601 34 1 7.7049 -5.3121 -1.9744 35 1 7.3973 -5.3077 -3.7337 36 1 5.9878 -8.5529 -3.9249 37 1 6.1859 -7.0095 -4.7890 38 1 4.4627 -7.4137 -1.6846 39 1 4.2675 -6.6982 -3.3144 40 1 1.1448 -3.1752 -1.6941 41 1 1.1859 -4.4794 -0.4833 42 1 0.2333 -2.3242 0.4134 43 1 1.6843 -2.8675 1.2963 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168971816.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:51 Heat of formation + Delta-G solvation = -35.865844 kcal Electronic energy + Delta-G solvation = -22712.876656 eV Core-core repulsion = 19373.654187 eV Total energy + Delta-G solvation = -3339.222469 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.49560 -39.25653 -37.17081 -36.62372 -34.13094 -32.21277 -30.85074 -29.62865 -28.83729 -27.35401 -25.53232 -23.61294 -21.71563 -21.36540 -20.85746 -20.47672 -19.27148 -19.01438 -18.51119 -17.55936 -16.52894 -16.05115 -15.30134 -14.72741 -14.38822 -13.76024 -13.57782 -13.32507 -12.98330 -12.95382 -12.77300 -12.37891 -12.09226 -12.04680 -11.73609 -11.58006 -11.42288 -11.29624 -11.22667 -11.08826 -10.97726 -10.88597 -10.81707 -10.66502 -10.44547 -10.10344 -9.83378 -9.61588 -8.94379 -8.76342 -8.40599 -7.88785 -6.15012 -3.99754 0.30187 1.45605 3.22672 3.33644 3.36023 3.68074 3.85347 4.11855 4.36375 4.38365 4.46126 4.75000 4.80758 5.11927 5.12543 5.20464 5.28917 5.37693 5.45709 5.65740 5.72357 5.83859 5.86267 5.93226 6.05566 6.07932 6.13712 6.23578 6.46617 6.70749 6.79319 6.84735 6.88825 7.05963 7.18269 7.33834 7.37159 7.52914 7.64444 7.66269 7.82661 7.87362 8.39005 8.96043 9.53038 10.94840 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.038653 B = 0.003251 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.211246 B = 8609.390382 C = 9145.617968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.492 4.492 8 C -0.012 4.012 9 C -0.135 4.135 10 C 0.101 3.899 11 H 0.063 0.937 12 N -0.682 5.682 13 C 0.088 3.912 14 H 0.084 0.916 15 C -0.157 4.157 16 C -0.118 4.118 17 C -0.101 4.101 18 H 0.086 0.914 19 C -0.008 4.008 20 N -0.017 5.017 21 O -0.176 6.176 22 O -0.154 6.154 23 C -0.103 4.103 24 C -0.092 4.092 25 C 0.009 3.991 26 H 0.263 0.737 27 H 0.011 0.989 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.337 0.663 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.034 0.966 42 H 0.055 0.945 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.813 -12.809 -6.959 18.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.124 4.124 3 Si 0.705 3.295 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.511 4.511 8 C -0.050 4.050 9 C -0.175 4.175 10 C -0.008 4.008 11 H 0.082 0.918 12 N -0.310 5.310 13 C -0.023 4.023 14 H 0.103 0.897 15 C -0.196 4.196 16 C -0.156 4.156 17 C -0.120 4.120 18 H 0.105 0.895 19 C -0.125 4.125 20 N 0.505 4.495 21 O -0.392 6.392 22 O -0.376 6.376 23 C -0.141 4.141 24 C -0.131 4.131 25 C -0.029 4.029 26 H 0.073 0.927 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.155 0.845 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 9.521 -13.082 -6.516 17.443 hybrid contribution 1.187 1.620 -0.501 2.070 sum 10.708 -11.463 -7.017 17.184 Atomic orbital electron populations 1.69913 1.06269 1.26834 1.48996 1.24820 0.94534 0.98537 0.94558 0.86803 0.80998 0.83955 0.77722 1.18714 1.21017 1.21182 1.20016 0.92380 0.92394 1.46283 1.19696 0.97101 0.94444 0.93735 1.22326 0.97132 0.97534 1.00479 1.21546 0.97917 0.88152 0.93171 0.91843 1.60737 1.25145 1.37440 1.07725 1.22536 0.88134 0.92363 0.99269 0.89736 1.23315 0.96692 0.98709 1.00875 1.22309 0.97912 0.91867 1.03479 1.22104 0.99492 0.97347 0.93076 0.89511 1.24848 0.77403 1.06282 1.03942 1.44827 1.06560 1.00302 0.97839 1.94566 1.86659 1.09675 1.48298 1.94557 1.50395 1.40025 1.52629 1.22347 0.91270 0.98578 1.01954 1.21554 0.92640 0.97939 1.00938 1.19407 0.99084 0.92359 0.92084 0.92696 0.97040 0.95196 0.94800 0.93066 0.84488 0.91482 0.90641 0.90751 0.90636 0.85064 0.84475 0.90488 0.90595 0.93380 0.94759 0.92600 0.98112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.12 12.81 55.43 0.71 -24.41 16 2 C 0.08 2.12 5.43 -17.82 -0.10 2.02 16 3 Si 0.88 20.66 27.63 -169.99 -4.70 15.96 16 4 H -0.26 -5.97 6.14 56.52 0.35 -5.62 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.49 -12.69 5.44 -98.90 -0.54 -13.22 16 8 C -0.01 -0.26 5.47 -27.49 -0.15 -0.41 16 9 C -0.14 -2.56 5.06 -26.63 -0.13 -2.70 16 10 C 0.10 1.80 2.36 -67.76 -0.16 1.64 16 11 H 0.06 1.18 7.46 -51.93 -0.39 0.79 16 12 N -0.68 -9.64 6.14 -97.71 -0.60 -10.24 16 13 C 0.09 1.00 3.17 -65.72 -0.21 0.79 16 14 H 0.08 1.05 7.49 -51.93 -0.39 0.67 16 15 C -0.16 -1.65 5.37 -24.96 -0.13 -1.78 16 16 C -0.12 -1.06 5.31 -25.50 -0.14 -1.20 16 17 C -0.10 -0.78 3.02 -89.50 -0.27 -1.05 16 18 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 19 C -0.01 -0.05 5.61 -4.04 -0.02 -0.08 16 20 N -0.02 -0.17 4.23 -10.61 -0.04 -0.22 16 21 O -0.18 -2.05 19.22 -29.46 -0.57 -2.62 16 22 O -0.15 -1.79 16.43 -29.46 -0.48 -2.28 16 23 C -0.10 -0.88 6.05 -25.07 -0.15 -1.03 16 24 C -0.09 -1.92 5.54 -26.63 -0.15 -2.07 16 25 C 0.01 0.21 6.00 -27.47 -0.16 0.04 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.03 0.68 5.02 -51.93 -0.26 0.42 16 29 H 0.03 0.56 5.47 -51.93 -0.28 0.28 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.34 4.58 8.01 -39.29 -0.31 4.26 16 32 H 0.07 0.70 7.79 -51.93 -0.40 0.29 16 33 H 0.07 0.90 6.60 -51.93 -0.34 0.55 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.69 6.48 -51.93 -0.34 0.35 16 36 H 0.13 0.65 8.11 -51.93 -0.42 0.23 16 37 H 0.14 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.60 7.86 -51.93 -0.41 0.19 16 40 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.51 7.11 -51.93 -0.37 1.14 16 43 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 LS Contribution 329.61 15.07 4.97 4.97 Total: -1.00 -28.28 329.61 -9.94 -38.22 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -6.91 Total: -0.35 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.32 Total: -19.03 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.07 Total: -34.87 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -1.05 Total: -4.89 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.70 Total: 15.96 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.28 -9.94 -38.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168971816.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.351 kcal (2) G-P(sol) polarization free energy of solvation -28.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds