Wall clock time and date at job start Tue Mar 31 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99803 * 2 1 4 4 H 1.48501 * 109.46808 * 269.99563 * 3 2 1 5 5 H 1.48501 * 109.47297 * 29.99743 * 3 2 1 6 6 H 1.48502 * 109.46930 * 149.99705 * 3 2 1 7 7 C 1.37876 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99926 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00238 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.53596 * 59.90331 * 9 7 2 11 11 C 1.53127 * 109.50372 * 299.80684 * 9 7 2 12 12 C 1.53123 * 109.15019 * 182.39855 * 11 9 7 13 13 C 1.53034 * 109.27992 * 57.67185 * 12 11 9 14 14 N 1.46847 * 109.51345 * 300.80438 * 13 12 11 15 15 C 1.46895 * 110.99982 * 185.84805 * 14 13 12 16 16 H 1.08998 * 110.43621 * 186.74242 * 15 14 13 17 17 C 1.54894 * 110.48663 * 309.28482 * 15 14 13 18 18 C 1.55023 * 102.68456 * 156.51792 * 17 15 14 19 19 C 1.54267 * 104.28083 * 322.23461 * 18 17 15 20 20 H 1.09000 * 110.03169 * 264.23076 * 19 18 17 21 21 C 1.53004 * 110.02994 * 142.80585 * 19 18 17 22 22 N 1.46494 * 109.47357 * 67.83262 * 21 19 18 23 23 O 1.21807 * 119.99684 * 134.99755 * 22 21 19 24 24 O 1.21795 * 120.00465 * 314.99562 * 22 21 19 25 25 C 1.53872 * 106.59838 * 23.52010 * 19 18 17 26 26 C 1.46843 * 111.20124 * 61.74903 * 14 13 12 27 27 H 0.96995 * 120.00116 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.52393 * 302.30664 * 11 9 7 29 29 H 1.08998 * 109.52208 * 62.49785 * 11 9 7 30 30 H 1.08997 * 109.51083 * 297.71779 * 12 11 9 31 31 H 1.08998 * 109.48980 * 177.60711 * 12 11 9 32 32 H 1.09002 * 109.46271 * 180.79158 * 13 12 11 33 33 H 1.08994 * 109.46242 * 60.81457 * 13 12 11 34 34 H 1.09004 * 110.75611 * 274.93858 * 17 15 14 35 35 H 1.09006 * 110.75440 * 38.30512 * 17 15 14 36 36 H 1.08999 * 110.52597 * 203.48872 * 18 17 15 37 37 H 1.09005 * 110.48142 * 80.95735 * 18 17 15 38 38 H 1.09006 * 109.46648 * 187.83514 * 21 19 18 39 39 H 1.09003 * 109.47254 * 307.82680 * 21 19 18 40 40 H 1.09003 * 110.02594 * 240.71548 * 25 19 18 41 41 H 1.08994 * 110.07114 * 119.30736 * 25 19 18 42 42 H 1.08993 * 109.46313 * 58.27251 * 26 14 13 43 43 H 1.09000 * 109.46480 * 178.25361 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8757 -0.6787 0.8899 11 6 4.0233 -0.4768 -1.2513 12 6 5.5533 -0.5338 -1.2729 13 6 6.0051 -1.9954 -1.2359 14 7 5.4909 -2.6371 -0.0192 15 6 6.0188 -4.0007 0.1202 16 1 5.5418 -4.5098 0.9576 17 6 5.8096 -4.7996 -1.1902 18 6 6.9026 -5.8952 -1.0992 19 6 8.1116 -5.1750 -0.4672 20 1 8.7918 -4.8327 -1.2472 21 6 8.8428 -6.1192 0.4893 22 7 9.4738 -7.1972 -0.2761 23 8 10.6197 -7.5289 -0.0298 24 8 8.8527 -7.7619 -1.1586 25 6 7.5497 -3.9705 0.3081 26 6 4.0226 -2.6366 0.0015 27 1 -0.4850 0.8400 -0.0004 28 1 3.6277 -0.9686 -2.1400 29 1 3.6977 0.5633 -1.2341 30 1 5.9495 -0.0082 -0.4042 31 1 5.9219 -0.0619 -2.1837 32 1 7.0942 -2.0391 -1.2370 33 1 5.6198 -2.5170 -2.1120 34 1 4.8149 -5.2446 -1.2168 35 1 5.9729 -4.1638 -2.0605 36 1 7.1558 -6.2659 -2.0924 37 1 6.5699 -6.7138 -0.4609 38 1 9.6071 -5.5645 1.0336 39 1 8.1299 -6.5442 1.1959 40 1 7.9572 -3.0436 -0.0956 41 1 7.7979 -4.0577 1.3658 42 1 3.6468 -3.1552 -0.8804 43 1 3.6718 -3.1457 0.8992 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169036115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:14 Heat of formation + Delta-G solvation = -14.951454 kcal Electronic energy + Delta-G solvation = -23096.490373 eV Core-core repulsion = 19758.174820 eV Total energy + Delta-G solvation = -3338.315553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.48295 -39.82173 -37.39732 -36.61909 -33.93057 -32.38273 -31.06357 -30.39888 -28.83210 -26.88938 -25.05308 -23.73443 -23.19241 -21.75188 -20.87935 -19.69568 -18.97170 -18.82400 -18.56422 -17.66012 -16.84335 -16.23115 -15.33613 -14.92228 -14.45560 -14.32282 -13.93940 -13.61551 -13.36104 -13.26462 -12.86606 -12.37184 -12.26268 -12.10359 -11.86830 -11.57068 -11.49081 -11.39333 -11.31427 -11.22913 -11.14966 -11.01441 -10.90506 -10.59251 -10.41524 -10.09752 -9.97493 -9.73256 -9.15281 -8.97584 -8.55053 -7.86327 -6.10316 -4.09748 0.30924 1.46148 3.25242 3.36648 3.39405 3.68628 3.82784 4.03523 4.29630 4.39066 4.42881 4.58147 4.90728 5.12679 5.13696 5.20648 5.21417 5.30805 5.35081 5.40784 5.48464 5.64151 5.78622 5.84228 5.88892 5.92413 6.01745 6.07075 6.10570 6.17006 6.23593 6.30245 6.43103 6.55433 6.75075 6.78735 7.15340 7.34156 7.34633 7.52047 7.60106 7.81734 8.48319 8.92691 9.52414 11.02944 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.043480 B = 0.003486 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.815090 B = 8030.168473 C = 8283.157770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.034 0.966 11 C -0.123 4.123 12 C -0.120 4.120 13 C 0.057 3.943 14 N -0.533 5.533 15 C 0.082 3.918 16 H 0.087 0.913 17 C -0.164 4.164 18 C -0.111 4.111 19 C -0.100 4.100 20 H 0.086 0.914 21 C -0.008 4.008 22 N -0.017 5.017 23 O -0.178 6.178 24 O -0.152 6.152 25 C -0.109 4.109 26 C 0.078 3.922 27 H 0.264 0.736 28 H 0.056 0.944 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.131 0.869 39 H 0.139 0.861 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.029 0.971 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.466 -9.296 -0.351 19.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.553 4.553 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.158 4.158 13 C -0.071 4.071 14 N -0.256 5.256 15 C -0.027 4.027 16 H 0.105 0.895 17 C -0.203 4.203 18 C -0.149 4.149 19 C -0.120 4.120 20 H 0.104 0.896 21 C -0.125 4.125 22 N 0.505 4.495 23 O -0.393 6.393 24 O -0.375 6.375 25 C -0.148 4.148 26 C -0.049 4.049 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.104 0.896 41 H 0.091 0.909 42 H 0.047 0.953 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.150 -8.316 0.508 19.066 hybrid contribution 0.182 0.311 -0.798 0.876 sum 17.332 -8.004 -0.290 19.093 Atomic orbital electron populations 1.69897 1.06317 1.26971 1.50832 1.24987 0.94660 0.99056 0.94394 0.86825 0.79985 0.83487 0.77847 1.20729 1.22613 1.18857 1.20993 0.88791 0.94470 1.51082 0.90986 1.19160 0.95946 0.91137 0.93637 0.94745 1.22028 0.92564 1.00272 1.01143 1.21666 0.98180 0.95220 1.00764 1.22091 0.98539 0.95308 0.91125 1.62112 1.10541 1.15505 1.37472 1.22545 0.93728 0.89465 0.96977 0.89495 1.23300 0.99175 0.97791 1.00041 1.22450 0.93263 0.97319 1.01842 1.22108 0.98158 0.94920 0.96786 0.89561 1.24916 1.01652 0.89039 0.96911 1.44813 1.01135 1.02579 1.01000 1.94570 1.03059 1.69660 1.72036 1.94559 1.63658 1.54837 1.24469 1.22229 0.96094 0.96484 0.99981 1.22071 0.83322 0.99645 0.99820 0.92660 0.92568 0.93558 0.91906 0.92848 0.91825 0.94699 0.90842 0.90435 0.90291 0.91123 0.85087 0.84383 0.89609 0.90902 0.95280 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 2 C 0.07 2.00 5.45 -17.82 -0.10 1.91 16 3 Si 0.89 21.76 24.36 -169.99 -4.14 17.62 16 4 H -0.28 -6.70 6.89 56.52 0.39 -6.31 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 7 C -0.52 -14.07 9.14 -34.44 -0.31 -14.39 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.02 0.46 1.85 -91.69 -0.17 0.29 16 10 H 0.03 0.83 7.20 -51.93 -0.37 0.45 16 11 C -0.12 -2.55 4.74 -26.60 -0.13 -2.67 16 12 C -0.12 -2.00 6.09 -26.65 -0.16 -2.16 16 13 C 0.06 0.82 4.55 -3.84 -0.02 0.80 16 14 N -0.53 -8.13 4.65 -224.72 -1.04 -9.17 16 15 C 0.08 0.96 2.91 -66.06 -0.19 0.76 16 16 H 0.09 1.01 8.01 -51.93 -0.42 0.60 16 17 C -0.16 -1.80 5.61 -24.66 -0.14 -1.94 16 18 C -0.11 -1.00 4.83 -25.00 -0.12 -1.12 16 19 C -0.10 -0.78 3.02 -89.50 -0.27 -1.05 16 20 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 21 C -0.01 -0.06 5.60 -4.04 -0.02 -0.08 16 22 N -0.02 -0.17 4.23 -10.61 -0.04 -0.21 16 23 O -0.18 -2.07 19.22 -29.46 -0.57 -2.64 16 24 O -0.15 -1.76 16.77 -29.46 -0.49 -2.26 16 25 C -0.11 -0.96 5.96 -25.62 -0.15 -1.11 16 26 C 0.08 1.47 4.48 -3.83 -0.02 1.45 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.05 1.03 3.37 -51.93 -0.17 0.86 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.78 6.06 -51.93 -0.31 0.46 16 33 H 0.03 0.51 6.20 -51.93 -0.32 0.19 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.91 5.60 -51.93 -0.29 0.62 16 36 H 0.08 0.75 7.68 -51.93 -0.40 0.35 16 37 H 0.07 0.61 7.71 -51.93 -0.40 0.21 16 38 H 0.13 0.64 8.11 -51.93 -0.42 0.22 16 39 H 0.14 0.71 8.00 -51.93 -0.42 0.30 16 40 H 0.09 0.81 5.98 -51.93 -0.31 0.50 16 41 H 0.07 0.54 7.67 -51.93 -0.40 0.14 16 42 H 0.03 0.56 7.77 -51.93 -0.40 0.16 16 43 H 0.07 1.25 8.03 -51.93 -0.42 0.83 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -30.29 322.35 -9.23 -39.52 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -6.77 Total: -1.87 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -1.80 Total: -19.31 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.32 Total: -35.93 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -1.06 Total: -4.89 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.14 Total: 17.62 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.29 -9.23 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169036115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.572 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds