Wall clock time and date at job start Tue Mar 31 2020 06:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00289 * 2 1 4 4 H 1.48502 * 109.46978 * 85.02717 * 3 2 1 5 5 H 1.48503 * 109.47017 * 205.02979 * 3 2 1 6 6 H 1.48501 * 109.46832 * 325.02904 * 3 2 1 7 7 C 1.37877 * 120.00116 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00339 * 175.87270 * 7 2 1 9 9 C 1.50704 * 119.99912 * 355.87187 * 7 2 1 10 10 H 1.09000 * 109.49980 * 56.04503 * 9 7 2 11 11 C 1.53119 * 109.50258 * 295.92914 * 9 7 2 12 12 C 1.53120 * 109.15938 * 182.40246 * 11 9 7 13 13 C 1.53038 * 109.27904 * 57.65644 * 12 11 9 14 14 N 1.46848 * 109.52149 * 300.81737 * 13 12 11 15 15 C 1.46892 * 111.00091 * 185.84133 * 14 13 12 16 16 H 1.09009 * 110.43341 * 300.08381 * 15 14 13 17 17 C 1.54267 * 110.49026 * 62.76603 * 15 14 13 18 18 C 1.53875 * 106.59776 * 142.28983 * 17 15 14 19 19 C 1.54257 * 106.60134 * 0.02562 * 18 17 15 20 20 H 1.09001 * 110.48908 * 95.06881 * 19 18 17 21 21 C 1.53000 * 110.48693 * 217.71422 * 19 18 17 22 22 N 1.46497 * 109.46920 * 289.77169 * 21 19 18 23 23 O 1.21802 * 119.99989 * 45.00490 * 22 21 19 24 24 O 1.21803 * 120.00171 * 224.99666 * 22 21 19 25 25 C 1.54891 * 104.19899 * 336.38796 * 19 18 17 26 26 C 1.46849 * 111.19674 * 61.73929 * 14 13 12 27 27 H 0.97002 * 119.99379 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.52410 * 302.30785 * 11 9 7 29 29 H 1.08999 * 109.52271 * 62.49768 * 11 9 7 30 30 H 1.09006 * 109.50570 * 297.71198 * 12 11 9 31 31 H 1.09001 * 109.50098 * 177.59912 * 12 11 9 32 32 H 1.08997 * 109.45945 * 180.80588 * 13 12 11 33 33 H 1.08995 * 109.45302 * 60.82707 * 13 12 11 34 34 H 1.08999 * 110.03390 * 261.58074 * 17 15 14 35 35 H 1.09003 * 110.02459 * 23.00799 * 17 15 14 36 36 H 1.09008 * 110.02577 * 240.71739 * 18 17 15 37 37 H 1.08999 * 110.07221 * 119.31592 * 18 17 15 38 38 H 1.09001 * 109.47313 * 49.77494 * 21 19 18 39 39 H 1.09002 * 109.47245 * 169.77609 * 21 19 18 40 40 H 1.09000 * 110.75766 * 279.63157 * 25 19 18 41 41 H 1.08997 * 110.76148 * 156.25586 * 25 19 18 42 42 H 1.09006 * 109.46397 * 178.23729 * 26 14 13 43 43 H 1.09000 * 109.44952 * 58.27154 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3916 2.1071 1.3948 5 1 3.5954 1.4120 -0.5924 6 1 1.5032 2.6200 -0.8025 7 6 2.0045 -1.1940 0.0005 8 1 3.0824 -1.1953 -0.0668 9 6 1.2540 -2.4974 0.0951 10 1 0.5233 -2.5559 -0.7116 11 6 0.5344 -2.5763 1.4444 12 6 -0.1759 -3.9281 1.5569 13 6 0.8498 -5.0527 1.3979 14 7 1.5099 -4.9337 0.0915 15 6 2.4012 -6.0752 -0.1538 16 1 3.1722 -6.1282 0.6150 17 6 1.5944 -7.3891 -0.2048 18 6 2.2359 -8.2565 -1.3019 19 6 3.4105 -7.4399 -1.8789 20 1 4.3442 -7.7160 -1.3889 21 6 3.5158 -7.6483 -3.3910 22 7 3.9783 -9.0111 -3.6650 23 8 3.4921 -9.9518 -3.0631 24 8 4.8489 -9.2035 -4.4948 25 6 3.0443 -5.9694 -1.5587 26 6 2.2381 -3.6635 -0.0216 27 1 -0.4849 0.8401 -0.0004 28 1 1.2610 -2.4784 2.2509 29 1 -0.1987 -1.7726 1.5138 30 1 -0.9296 -4.0094 0.7736 31 1 -0.6547 -4.0074 2.5329 32 1 0.3449 -6.0165 1.4632 33 1 1.5952 -4.9786 2.1896 34 1 1.6516 -7.8999 0.7564 35 1 0.5545 -7.1790 -0.4552 36 1 1.5072 -8.4676 -2.0847 37 1 2.6043 -9.1889 -0.8740 38 1 2.5376 -7.4979 -3.8476 39 1 4.2251 -6.9333 -3.8078 40 1 2.3273 -5.5832 -2.2833 41 1 3.9382 -5.3464 -1.5286 42 1 2.7419 -3.6184 -0.9873 43 1 2.9770 -3.5963 0.7769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169036121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:20 Heat of formation + Delta-G solvation = -29.872955 kcal Electronic energy + Delta-G solvation = -22929.756772 eV Core-core repulsion = 19590.794174 eV Total energy + Delta-G solvation = -3338.962598 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.38222 -39.39896 -37.25429 -36.53192 -33.79170 -32.35673 -31.02519 -30.01090 -28.47314 -26.75287 -24.97475 -23.64399 -22.71856 -21.62375 -20.38211 -19.88066 -18.95306 -18.74155 -18.42913 -17.52151 -16.47523 -16.03867 -15.53195 -14.60170 -14.37113 -13.96707 -13.83398 -13.33240 -13.18813 -12.97205 -12.55473 -12.51034 -12.16116 -11.77360 -11.68583 -11.43395 -11.27039 -11.20074 -11.10922 -11.02122 -10.96464 -10.95916 -10.70247 -10.68691 -10.50521 -10.15962 -9.93019 -9.51351 -9.05359 -8.77834 -8.36529 -7.77314 -6.04477 -4.08778 0.40320 1.55523 3.26316 3.34020 3.36205 3.80097 3.95404 4.17460 4.36046 4.45881 4.55040 4.76905 4.87983 5.24384 5.27500 5.31945 5.34774 5.41523 5.52290 5.68132 5.71350 5.79352 5.94329 5.99564 6.05759 6.06764 6.16799 6.20615 6.23600 6.36864 6.43199 6.63272 6.66980 6.88200 7.13637 7.30271 7.44034 7.57442 7.69574 7.74310 7.98560 8.06601 8.41604 8.95833 9.55528 11.03619 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023374 B = 0.003758 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.614071 B = 7449.752207 C = 8383.842372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.275 1.275 6 H -0.286 1.286 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.055 3.945 10 H 0.038 0.962 11 C -0.108 4.108 12 C -0.117 4.117 13 C 0.063 3.937 14 N -0.531 5.531 15 C 0.081 3.919 16 H 0.041 0.959 17 C -0.118 4.118 18 C -0.112 4.112 19 C -0.101 4.101 20 H 0.088 0.912 21 C -0.007 4.007 22 N -0.016 5.016 23 O -0.155 6.155 24 O -0.178 6.178 25 C -0.104 4.104 26 C 0.066 3.934 27 H 0.260 0.740 28 H 0.030 0.970 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.022 0.978 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.740 -14.518 -2.248 15.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.200 1.200 6 H -0.212 1.212 7 C -0.556 4.556 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.056 0.944 11 C -0.146 4.146 12 C -0.155 4.155 13 C -0.065 4.065 14 N -0.255 5.255 15 C -0.028 4.028 16 H 0.059 0.941 17 C -0.156 4.156 18 C -0.149 4.149 19 C -0.121 4.121 20 H 0.106 0.894 21 C -0.124 4.124 22 N 0.506 4.494 23 O -0.378 6.378 24 O -0.393 6.393 25 C -0.143 4.143 26 C -0.061 4.061 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.107 0.893 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.992 -13.649 -2.487 14.193 hybrid contribution 1.221 0.835 0.593 1.594 sum 4.214 -12.814 -1.894 13.622 Atomic orbital electron populations 1.69939 1.05850 1.26411 1.50338 1.24928 0.94791 0.98928 0.95054 0.86651 0.79973 0.83826 0.77964 1.20788 1.19955 1.21223 1.21131 0.92994 0.90765 1.50699 0.92925 1.18660 0.93393 0.90284 0.94065 0.94388 1.21609 0.99444 0.94562 0.98971 1.21667 0.97662 0.96340 0.99834 1.22017 0.96623 0.98839 0.89019 1.62153 1.30587 1.01892 1.30883 1.22365 0.93591 0.91567 0.95270 0.94135 1.22231 1.00791 0.94324 0.98246 1.22232 0.95763 0.98274 0.98674 1.22278 1.01459 0.99116 0.89245 0.89371 1.24799 1.05716 0.79985 1.01900 1.44829 0.99523 1.06023 0.99059 1.94544 1.57911 1.36688 1.48612 1.94568 1.24246 1.92440 1.28093 1.22553 1.01168 0.92292 0.98243 1.22342 0.96215 0.88532 0.98999 0.93038 0.95069 0.90208 0.92005 0.93506 0.92141 0.95986 0.91999 0.90158 0.91269 0.90521 0.84236 0.84949 0.89321 0.90791 0.92083 0.96487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.89 11.83 55.43 0.66 -24.23 16 2 C 0.06 1.75 5.28 -17.82 -0.09 1.66 16 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -13.75 8.51 -34.44 -0.29 -14.04 16 8 H 0.05 1.38 7.75 -52.49 -0.41 0.98 16 9 C 0.05 1.31 2.16 -91.69 -0.20 1.11 16 10 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 11 C -0.11 -2.45 5.07 -26.61 -0.13 -2.58 16 12 C -0.12 -2.17 6.09 -26.65 -0.16 -2.34 16 13 C 0.06 1.03 5.31 -3.83 -0.02 1.01 16 14 N -0.53 -8.84 4.48 -224.72 -1.01 -9.84 16 15 C 0.08 1.06 2.58 -66.07 -0.17 0.89 16 16 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 17 C -0.12 -1.30 5.23 -25.61 -0.13 -1.44 16 18 C -0.11 -1.06 4.96 -25.62 -0.13 -1.19 16 19 C -0.10 -0.92 2.93 -88.96 -0.26 -1.19 16 20 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 21 C -0.01 -0.06 5.87 -4.04 -0.02 -0.08 16 22 N -0.02 -0.17 4.23 -10.61 -0.04 -0.22 16 23 O -0.15 -1.89 16.99 -29.46 -0.50 -2.39 16 24 O -0.18 -2.24 19.22 -29.46 -0.57 -2.81 16 25 C -0.10 -1.16 4.55 -24.75 -0.11 -1.27 16 26 C 0.07 1.30 4.50 -3.84 -0.02 1.28 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.08 2.04 6.64 -51.93 -0.34 1.69 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.86 6.93 -51.93 -0.36 0.50 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 36 H 0.07 0.64 7.71 -51.92 -0.40 0.24 16 37 H 0.08 0.73 7.72 -51.93 -0.40 0.33 16 38 H 0.14 0.94 7.95 -51.93 -0.41 0.52 16 39 H 0.13 0.88 8.11 -51.93 -0.42 0.46 16 40 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 41 H 0.07 0.82 7.82 -51.93 -0.41 0.42 16 42 H 0.06 1.17 6.68 -51.93 -0.35 0.82 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 335.47 15.07 5.06 5.06 Total: -1.00 -28.39 335.47 -10.44 -38.83 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -7.27 Total: -2.03 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -1.75 Total: -18.17 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: -0.40 Total: -34.29 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -1.07 Total: -5.19 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.39 -10.44 -38.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169036121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.962 kcal (2) G-P(sol) polarization free energy of solvation -28.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds