Wall clock time and date at job start Tue Mar 31 2020 06:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 H 1.09004 * 109.50367 * 59.64225 * 9 7 2 11 11 C 1.53116 * 109.49958 * 299.52400 * 9 7 2 12 12 C 1.53123 * 109.15578 * 182.40647 * 11 9 7 13 13 C 1.53032 * 109.28003 * 57.65520 * 12 11 9 14 14 N 1.46846 * 109.52328 * 300.81965 * 13 12 11 15 15 C 1.46904 * 110.99936 * 185.84169 * 14 13 12 16 16 H 1.08996 * 110.43136 * 291.87031 * 15 14 13 17 17 C 1.54886 * 110.48117 * 169.33525 * 15 14 13 18 18 C 1.54891 * 102.74617 * 203.37451 * 17 15 14 19 19 C 1.54268 * 104.19560 * 37.94776 * 18 17 15 20 20 H 1.09001 * 110.03484 * 95.71651 * 19 18 17 21 21 C 1.53001 * 110.03485 * 217.10514 * 19 18 17 22 22 N 1.46496 * 109.47021 * 293.54588 * 21 19 18 23 23 O 1.21795 * 120.00540 * 135.00128 * 22 21 19 24 24 O 1.21808 * 119.99842 * 314.99502 * 22 21 19 25 25 C 1.53874 * 106.59502 * 336.38787 * 19 18 17 26 26 C 1.46843 * 111.19660 * 61.73971 * 14 13 12 27 27 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.52591 * 302.30567 * 11 9 7 29 29 H 1.09000 * 109.52623 * 62.50059 * 11 9 7 30 30 H 1.08994 * 109.50655 * 297.70906 * 12 11 9 31 31 H 1.09006 * 109.53219 * 177.61387 * 12 11 9 32 32 H 1.09001 * 109.46056 * 180.80517 * 13 12 11 33 33 H 1.08998 * 109.45489 * 60.83282 * 13 12 11 34 34 H 1.09002 * 110.76298 * 321.69158 * 17 15 14 35 35 H 1.09000 * 110.76147 * 84.88371 * 17 15 14 36 36 H 1.09001 * 110.48674 * 156.61841 * 18 17 15 37 37 H 1.08992 * 110.49205 * 279.26745 * 18 17 15 38 38 H 1.09002 * 109.47096 * 53.54079 * 21 19 18 39 39 H 1.08995 * 109.47130 * 173.54283 * 21 19 18 40 40 H 1.09002 * 110.03384 * 240.71847 * 25 19 18 41 41 H 1.09000 * 110.03585 * 119.28614 * 25 19 18 42 42 H 1.09005 * 109.46200 * 178.24324 * 26 14 13 43 43 H 1.08999 * 109.45338 * 58.27671 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 1 0.6230 -2.5529 -0.8948 11 6 0.3740 -2.5887 1.2466 12 6 -0.3416 -3.9423 1.2631 13 6 0.6983 -5.0642 1.2213 14 7 1.5110 -4.9349 0.0051 15 6 2.4280 -6.0735 -0.1388 16 1 3.1917 -6.0476 0.6385 17 6 3.0829 -6.0679 -1.5424 18 6 3.4829 -7.5513 -1.7388 19 6 2.3194 -8.3436 -1.1076 20 1 1.6040 -8.6334 -1.8773 21 6 2.8569 -9.5874 -0.3970 22 7 3.4152 -10.5121 -1.3866 23 8 4.4910 -11.0455 -1.1829 24 8 2.8034 -10.7477 -2.4132 25 6 1.6487 -7.4039 -0.0903 26 6 2.2447 -3.6629 -0.0105 27 1 -0.4850 0.8401 -0.0004 28 1 0.9977 -2.4957 2.1357 29 1 -0.3639 -1.7866 1.2327 30 1 -0.9951 -4.0191 0.3941 31 1 -0.9349 -4.0298 2.1734 32 1 0.1914 -6.0292 1.2184 33 1 1.3425 -4.9949 2.0977 34 1 2.3657 -5.7573 -2.3022 35 1 3.9616 -5.4230 -1.5563 36 1 3.5721 -7.7851 -2.7997 37 1 4.4168 -7.7666 -1.2199 38 1 3.6358 -9.2954 0.3073 39 1 2.0456 -10.0775 0.1411 40 1 1.7062 -7.8339 0.9097 41 1 0.6075 -7.2370 -0.3661 42 1 2.8611 -3.6102 -0.9079 43 1 2.8817 -3.6005 0.8718 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169036123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:23 Heat of formation + Delta-G solvation = -28.635095 kcal Electronic energy + Delta-G solvation = -22888.506872 eV Core-core repulsion = 19549.597951 eV Total energy + Delta-G solvation = -3338.908921 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.43026 -39.45822 -37.26454 -36.61157 -33.78568 -32.42942 -30.81945 -30.17579 -28.54753 -26.75839 -24.98827 -23.67350 -22.84055 -21.56881 -20.44375 -19.71767 -18.97138 -18.77868 -18.52821 -17.77081 -16.65526 -15.79169 -15.37887 -14.82831 -14.49773 -14.01718 -13.78323 -13.27337 -13.22822 -13.07439 -12.57116 -12.44075 -12.05672 -11.96443 -11.68354 -11.50177 -11.28920 -11.24322 -11.22378 -11.00508 -10.99080 -10.87880 -10.80951 -10.67757 -10.60147 -10.14329 -9.88189 -9.50957 -9.07500 -8.74963 -8.34348 -7.77580 -6.01357 -4.07622 0.35583 1.50620 3.28030 3.35025 3.37569 3.71400 3.88893 4.16331 4.32759 4.43035 4.45605 4.53234 5.02070 5.14680 5.18954 5.28840 5.32572 5.41013 5.46357 5.60526 5.66147 5.70284 5.82091 5.94041 6.00500 6.06538 6.10827 6.21430 6.24985 6.37701 6.45284 6.63972 6.69210 6.90987 7.15567 7.34423 7.38468 7.57631 7.70578 7.75470 8.03392 8.12618 8.43573 8.96383 9.56961 11.04669 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034901 B = 0.003376 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.081134 B = 8292.569752 C = 8787.563471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.061 3.939 14 N -0.530 5.530 15 C 0.079 3.921 16 H 0.041 0.959 17 C -0.110 4.110 18 C -0.129 4.129 19 C -0.100 4.100 20 H 0.104 0.896 21 C -0.009 4.009 22 N -0.014 5.014 23 O -0.173 6.173 24 O -0.159 6.159 25 C -0.108 4.108 26 C 0.068 3.932 27 H 0.260 0.740 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.021 0.979 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.131 0.869 39 H 0.136 0.864 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.923 -16.644 1.126 16.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.067 4.067 14 N -0.255 5.255 15 C -0.030 4.030 16 H 0.058 0.942 17 C -0.147 4.147 18 C -0.167 4.167 19 C -0.119 4.119 20 H 0.123 0.877 21 C -0.126 4.126 22 N 0.508 4.492 23 O -0.390 6.390 24 O -0.381 6.381 25 C -0.147 4.147 26 C -0.059 4.059 27 H 0.070 0.930 28 H 0.048 0.952 29 H 0.109 0.891 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.083 0.917 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 2.169 -16.024 1.289 16.222 hybrid contribution 1.141 0.726 0.749 1.546 sum 3.310 -15.299 2.039 15.785 Atomic orbital electron populations 1.69890 1.05841 1.26359 1.50572 1.24933 0.94830 0.98962 0.95085 0.86630 0.79842 0.83614 0.78112 1.20671 1.21263 1.20032 1.21140 0.92795 0.90689 1.50848 0.92904 1.18654 0.92597 0.90264 0.94809 0.94765 1.21655 1.00029 0.94702 0.98501 1.21677 0.97164 0.96509 1.00194 1.22062 0.95684 0.98803 0.90182 1.62153 1.23675 1.01970 1.37659 1.22425 0.93347 0.90560 0.96690 0.94156 1.22485 1.00732 0.94222 0.97311 1.22557 0.96479 0.96457 1.01189 1.22144 0.99312 0.91423 0.99027 0.87736 1.24916 1.03423 0.92242 0.91971 1.44768 1.00594 1.01064 1.02808 1.94565 1.08941 1.52339 1.83173 1.94556 1.60334 1.66490 1.16695 1.22238 1.01206 0.93933 0.97278 1.22323 0.96478 0.88327 0.98785 0.93035 0.95226 0.89129 0.92063 0.93578 0.92290 0.96067 0.89657 0.91147 0.90718 0.91654 0.85123 0.84641 0.91738 0.89013 0.92070 0.96435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.93 11.37 55.43 0.63 -24.30 16 2 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.85 8.56 -34.44 -0.29 -14.14 16 8 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 9 C 0.06 1.34 2.26 -91.70 -0.21 1.14 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.54 5.03 -26.61 -0.13 -2.67 16 12 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 13 C 0.06 0.97 5.19 -3.84 -0.02 0.95 16 14 N -0.53 -8.85 4.49 -224.72 -1.01 -9.86 16 15 C 0.08 1.02 2.58 -66.05 -0.17 0.85 16 16 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 17 C -0.11 -1.34 5.53 -24.74 -0.14 -1.48 16 18 C -0.13 -1.29 6.16 -25.07 -0.15 -1.44 16 19 C -0.10 -0.86 2.81 -89.50 -0.25 -1.12 16 20 H 0.10 0.94 7.71 -51.93 -0.40 0.54 16 21 C -0.01 -0.06 5.48 -4.04 -0.02 -0.09 16 22 N -0.01 -0.15 4.01 -10.62 -0.04 -0.19 16 23 O -0.17 -2.11 19.22 -29.46 -0.57 -2.67 16 24 O -0.16 -1.94 18.35 -29.46 -0.54 -2.48 16 25 C -0.11 -1.05 4.79 -25.61 -0.12 -1.17 16 26 C 0.07 1.36 4.56 -3.84 -0.02 1.34 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 2.34 6.18 -51.93 -0.32 2.02 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.79 6.39 -51.93 -0.33 0.46 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.89 7.82 -51.93 -0.41 0.49 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.63 7.78 -51.93 -0.40 0.22 16 38 H 0.13 0.80 8.01 -51.93 -0.42 0.39 16 39 H 0.14 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 41 H 0.09 0.97 7.35 -51.93 -0.38 0.59 16 42 H 0.06 1.22 6.97 -51.93 -0.36 0.86 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 336.00 15.07 5.06 5.06 Total: -1.00 -28.60 336.00 -10.46 -39.06 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.19 Total: -2.01 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -1.79 Total: -18.55 kcal Atomic # 7 Polarization: -33.93 SS G_CDS: -0.42 Total: -34.35 kcal Atomic # 8 Polarization: -4.05 SS G_CDS: -1.11 Total: -5.15 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.60 -10.46 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169036123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.428 kcal (2) G-P(sol) polarization free energy of solvation -28.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds