Wall clock time and date at job start Tue Mar 31 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99757 * 2 1 4 4 H 1.48505 * 109.47216 * 240.00222 * 3 2 1 5 5 H 1.48503 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47246 * 120.00156 * 3 2 1 7 7 C 1.37877 * 120.00485 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00491 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99632 * 359.97438 * 7 2 1 10 10 C 1.53119 * 109.51928 * 180.02562 * 9 7 2 11 11 C 1.53041 * 109.27768 * 177.55901 * 10 9 7 12 12 N 1.46851 * 109.52251 * 300.82088 * 11 10 9 13 13 C 1.46894 * 110.99870 * 185.83954 * 12 11 10 14 14 H 1.08995 * 110.02189 * 54.93541 * 13 12 11 15 15 C 1.54265 * 110.03370 * 293.54119 * 13 12 11 16 16 C 1.54887 * 104.20056 * 217.05906 * 15 13 12 17 17 C 1.54890 * 102.91108 * 37.84875 * 16 15 13 18 18 H 1.09003 * 110.48855 * 80.83451 * 17 16 15 19 19 C 1.53008 * 110.48546 * 203.47179 * 17 16 15 20 20 N 1.46497 * 109.46959 * 293.54974 * 19 17 16 21 21 O 1.21802 * 120.00539 * 44.99681 * 20 19 17 22 22 O 1.21800 * 119.99878 * 224.99527 * 20 19 17 23 23 C 1.53877 * 110.07272 * 176.35265 * 13 12 11 24 24 C 1.46851 * 111.19732 * 61.73924 * 12 11 10 25 25 C 1.53033 * 109.52500 * 298.25631 * 24 12 11 26 26 H 0.96991 * 120.00311 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.52220 * 59.87785 * 9 7 2 28 28 H 1.09002 * 109.50461 * 57.61812 * 10 9 7 29 29 H 1.08997 * 109.50283 * 297.49746 * 10 9 7 30 30 H 1.08996 * 109.46617 * 180.79829 * 11 10 9 31 31 H 1.08996 * 109.45050 * 60.82561 * 11 10 9 32 32 H 1.09004 * 110.48891 * 98.37879 * 15 13 12 33 33 H 1.09006 * 110.48556 * 335.73777 * 15 13 12 34 34 H 1.09002 * 110.75856 * 156.25785 * 16 15 13 35 35 H 1.09006 * 110.75640 * 279.44771 * 16 15 13 36 36 H 1.09001 * 109.46977 * 53.54721 * 19 17 16 37 37 H 1.08997 * 109.47352 * 173.54840 * 19 17 16 38 38 H 1.08999 * 110.03493 * 238.58932 * 23 13 12 39 39 H 1.09003 * 110.03187 * 359.97438 * 23 13 12 40 40 H 1.08995 * 109.46009 * 58.27844 * 24 12 11 41 41 H 1.09004 * 109.45533 * 178.24284 * 24 12 11 42 42 H 1.08997 * 109.50513 * 299.24256 * 25 24 12 43 43 H 1.08993 * 109.53772 * 179.14105 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2452 -3.6638 -0.0005 11 6 1.4755 -4.9851 0.0610 12 7 0.6546 -5.0187 1.2782 13 6 0.0085 -6.3277 1.4415 14 1 0.7583 -7.1187 1.4240 15 6 -1.0227 -6.5521 0.3164 16 6 -2.1872 -7.2999 1.0120 17 6 -2.2510 -6.6229 2.4036 18 1 -2.7944 -5.6798 2.3446 19 6 -2.9058 -7.5566 3.4238 20 7 -4.3136 -7.7553 3.0707 21 8 -4.6260 -7.9793 1.9150 22 8 -5.1718 -7.6965 3.9330 23 6 -0.7713 -6.3701 2.7674 24 6 -0.3391 -3.9375 1.2785 25 6 0.3764 -2.5850 1.2533 26 1 -0.4850 0.8399 -0.0004 27 1 0.6222 -2.5566 -0.8889 28 1 2.9000 -3.5834 0.8672 29 1 2.8423 -3.6326 -0.9119 30 1 2.1807 -5.8160 0.0755 31 1 0.8311 -5.0709 -0.8139 32 1 -0.5949 -7.1657 -0.4765 33 1 -1.3664 -5.5974 -0.0820 34 1 -3.1203 -7.1532 0.4678 35 1 -1.9612 -8.3618 1.1090 36 1 -2.3910 -8.5174 3.4196 37 1 -2.8394 -7.1132 4.4173 38 1 -0.4000 -7.1815 3.3932 39 1 -0.6702 -5.4191 3.2905 40 1 -0.9749 -4.0285 0.3979 41 1 -0.9517 -4.0077 2.1774 42 1 1.0019 -2.4876 2.1407 43 1 -0.3611 -1.7827 1.2381 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169036138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:40 Heat of formation + Delta-G solvation = -22.205010 kcal Electronic energy + Delta-G solvation = -23141.095429 eV Core-core repulsion = 19802.465338 eV Total energy + Delta-G solvation = -3338.630091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.39299 -39.74684 -37.08111 -36.50620 -33.92607 -32.16380 -30.61203 -29.92037 -28.67540 -27.04999 -25.05301 -23.49197 -22.30185 -22.06439 -20.89851 -19.70058 -18.90871 -18.69866 -18.21273 -17.58163 -16.52114 -16.01604 -15.22010 -14.67536 -14.54201 -14.21699 -13.80930 -13.54520 -13.04028 -12.88204 -12.58784 -12.33024 -11.95145 -11.85902 -11.56995 -11.49618 -11.28388 -11.21109 -11.17643 -10.94003 -10.92705 -10.87386 -10.78803 -10.65472 -10.45556 -10.18499 -9.95353 -9.44493 -8.99079 -8.73976 -8.31158 -7.76836 -5.99073 -4.04539 0.39145 1.53904 3.31341 3.36209 3.38791 3.78180 3.92057 4.15629 4.37531 4.43796 4.51187 4.62235 5.01841 5.22666 5.24551 5.30694 5.31957 5.38813 5.46356 5.71210 5.73562 5.82957 5.90340 5.92042 5.98365 6.05319 6.14409 6.22616 6.27689 6.35338 6.58400 6.60478 6.82867 7.04789 7.11730 7.40060 7.43195 7.57030 7.65063 7.79749 8.02066 8.12844 8.46204 8.98925 9.60031 11.07062 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.027626 B = 0.003676 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.295077 B = 7614.336082 C = 8177.479302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.107 4.107 11 C 0.061 3.939 12 N -0.528 5.528 13 C 0.082 3.918 14 H 0.081 0.919 15 C -0.163 4.163 16 C -0.113 4.113 17 C -0.106 4.106 18 H 0.092 0.908 19 C -0.006 4.006 20 N -0.016 5.016 21 O -0.153 6.153 22 O -0.176 6.176 23 C -0.107 4.107 24 C 0.052 3.948 25 C -0.105 4.105 26 H 0.260 0.740 27 H 0.020 0.980 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.056 0.944 31 H 0.026 0.974 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.028 0.972 41 H 0.055 0.945 42 H 0.042 0.958 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 -16.014 5.372 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.145 4.145 11 C -0.067 4.067 12 N -0.251 5.251 13 C -0.028 4.028 14 H 0.099 0.901 15 C -0.202 4.202 16 C -0.151 4.151 17 C -0.125 4.125 18 H 0.110 0.890 19 C -0.123 4.123 20 N 0.505 4.495 21 O -0.376 6.376 22 O -0.392 6.392 23 C -0.145 4.145 24 C -0.075 4.075 25 C -0.143 4.143 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.560 -15.685 6.005 16.989 hybrid contribution -0.305 0.712 -0.644 1.007 sum -2.865 -14.973 5.361 16.160 Atomic orbital electron populations 1.69858 1.05865 1.26446 1.50985 1.24960 0.94832 0.98988 0.95166 0.86700 0.79637 0.83323 0.78572 1.20368 1.21354 1.20320 1.21177 0.92844 0.90708 1.50286 0.92837 1.18667 0.92676 0.91735 0.93895 1.21685 0.98730 0.93789 1.00267 1.22086 0.95630 0.99174 0.89795 1.62257 1.23158 1.01493 1.38237 1.22307 0.94641 0.93025 0.92787 0.90073 1.23146 0.96608 1.01440 0.99050 1.22619 0.99904 0.98806 0.93735 1.22396 0.97760 0.97909 0.94435 0.89008 1.24756 0.77868 1.05592 1.04059 1.44782 1.06192 0.97775 1.00702 1.94546 1.88388 1.50081 1.04536 1.94569 1.46606 1.54550 1.43512 1.22248 0.90628 1.03346 0.98324 1.22351 0.93471 0.92943 0.98703 1.21669 1.00189 0.93014 0.99410 0.93033 0.96200 0.92549 0.93218 0.92574 0.95532 0.91411 0.90232 0.89751 0.91346 0.84613 0.85067 0.91207 0.89244 0.95420 0.92688 0.93938 0.89019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.16 11.37 55.43 0.63 -24.53 16 2 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.51 -13.89 8.56 -34.44 -0.29 -14.18 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.18 2.16 -91.64 -0.20 0.99 16 10 C -0.11 -2.17 5.32 -26.65 -0.14 -2.31 16 11 C 0.06 1.03 5.16 -3.83 -0.02 1.01 16 12 N -0.53 -8.46 4.62 -225.36 -1.04 -9.51 16 13 C 0.08 1.00 3.00 -66.60 -0.20 0.80 16 14 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 15 C -0.16 -1.93 5.27 -25.07 -0.13 -2.06 16 16 C -0.11 -1.13 5.12 -24.74 -0.13 -1.25 16 17 C -0.11 -0.99 3.00 -88.85 -0.27 -1.26 16 18 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 19 C -0.01 -0.05 5.84 -4.04 -0.02 -0.07 16 20 N -0.02 -0.18 4.23 -10.61 -0.04 -0.22 16 21 O -0.15 -1.92 16.38 -29.46 -0.48 -2.41 16 22 O -0.18 -2.25 19.22 -29.46 -0.57 -2.82 16 23 C -0.11 -1.06 5.46 -25.51 -0.14 -1.20 16 24 C 0.05 0.95 4.74 -3.83 -0.02 0.93 16 25 C -0.10 -2.38 5.12 -26.65 -0.14 -2.52 16 26 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 31 H 0.03 0.46 7.51 -51.93 -0.39 0.07 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.13 5.63 -51.93 -0.29 0.84 16 34 H 0.08 0.93 6.95 -51.93 -0.36 0.57 16 35 H 0.07 0.60 8.02 -51.93 -0.42 0.18 16 36 H 0.14 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.13 0.79 8.11 -51.93 -0.42 0.37 16 38 H 0.07 0.54 7.84 -51.93 -0.41 0.13 16 39 H 0.09 1.03 6.37 -51.93 -0.33 0.70 16 40 H 0.03 0.53 6.10 -51.93 -0.32 0.21 16 41 H 0.05 0.91 6.13 -51.93 -0.32 0.59 16 42 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 2.35 6.17 -51.93 -0.32 2.03 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -28.82 328.76 -10.28 -39.09 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -6.91 Total: -1.12 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -1.79 Total: -19.56 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: -0.46 Total: -34.26 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -1.05 Total: -5.22 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.82 -10.28 -39.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169036138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.886 kcal (2) G-P(sol) polarization free energy of solvation -28.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds