Wall clock time and date at job start Tue Mar 31 2020 06:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.53123 * 109.52073 * 299.40303 * 9 7 2 11 11 C 1.53031 * 109.27586 * 182.44289 * 10 9 7 12 12 N 1.46848 * 109.52746 * 59.17723 * 11 10 9 13 13 C 1.46898 * 111.00087 * 174.15850 * 12 11 10 14 14 H 1.09000 * 110.01588 * 74.27460 * 13 12 11 15 15 C 1.53875 * 110.02929 * 195.66294 * 13 12 11 16 16 C 1.54276 * 106.59595 * 119.28781 * 15 13 12 17 17 C 1.54892 * 104.19500 * 23.61020 * 16 15 13 18 18 H 1.09000 * 110.75706 * 80.37195 * 17 16 15 19 19 C 1.52999 * 110.75632 * 203.56161 * 17 16 15 20 20 N 1.46503 * 109.46614 * 293.54592 * 19 17 16 21 21 O 1.21796 * 120.00198 * 44.99987 * 20 19 17 22 22 O 1.21803 * 119.99760 * 225.00095 * 20 19 17 23 23 C 1.54268 * 110.03382 * 312.83447 * 13 12 11 24 24 C 1.46842 * 111.19688 * 298.25933 * 12 11 10 25 25 C 1.53036 * 109.52476 * 61.74111 * 24 12 11 26 26 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.52136 * 59.58946 * 9 7 2 28 28 H 1.08999 * 109.50425 * 302.38534 * 10 9 7 29 29 H 1.08997 * 109.50292 * 62.50214 * 10 9 7 30 30 H 1.09006 * 109.46173 * 299.16238 * 11 10 9 31 31 H 1.09005 * 109.46284 * 179.19666 * 11 10 9 32 32 H 1.08997 * 110.03541 * 238.56674 * 15 13 12 33 33 H 1.08999 * 110.03753 * 0.02562 * 15 13 12 34 34 H 1.09001 * 110.48495 * 142.28269 * 16 15 13 35 35 H 1.08994 * 110.48324 * 264.80270 * 16 15 13 36 36 H 1.08996 * 109.47160 * 53.54126 * 19 17 16 37 37 H 1.08995 * 109.47221 * 173.54376 * 19 17 16 38 38 H 1.08998 * 110.48272 * 335.78036 * 23 13 12 39 39 H 1.08994 * 110.48649 * 98.42645 * 23 13 12 40 40 H 1.08998 * 109.46258 * 301.72129 * 24 12 11 41 41 H 1.09000 * 109.45584 * 181.75024 * 24 12 11 42 42 H 1.09004 * 109.50673 * 180.87972 * 25 24 12 43 43 H 1.09000 * 109.53865 * 60.77876 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0285 -0.4820 -1.2474 11 6 5.5576 -0.5385 -1.2660 12 7 5.9971 -1.9397 -1.2611 13 6 7.4545 -2.0349 -1.4182 14 1 7.9494 -1.7450 -0.4913 15 6 7.8507 -3.4719 -1.8001 16 6 8.5451 -3.3869 -3.1751 17 6 9.0619 -1.9287 -3.2502 18 1 9.9930 -1.8197 -2.6941 19 6 9.2475 -1.4934 -4.7051 20 7 10.3289 -2.2723 -5.3135 21 8 10.3837 -3.4767 -5.1408 22 8 11.1733 -1.7153 -5.9921 23 6 7.9219 -1.1268 -2.5744 24 6 5.5526 -2.6313 -0.0444 25 6 4.0232 -2.6373 0.0108 26 1 -0.4849 0.8400 0.0004 27 1 3.8721 -0.6766 0.8948 28 1 3.6351 -0.9766 -2.1354 29 1 3.7029 0.5582 -1.2352 30 1 5.9506 -0.0316 -0.3847 31 1 5.9284 -0.0448 -2.1643 32 1 8.5386 -3.8790 -1.0590 33 1 6.9615 -4.0986 -1.8693 34 1 9.3768 -4.0895 -3.2265 35 1 7.8315 -3.5825 -3.9754 36 1 8.3226 -1.6638 -5.2562 37 1 9.5000 -0.4336 -4.7379 38 1 7.1072 -0.9552 -3.2779 39 1 8.2988 -0.1801 -2.1874 40 1 5.9456 -2.1145 0.8312 41 1 5.9196 -3.6576 -0.0555 42 1 3.6938 -3.1370 0.9218 43 1 3.6292 -3.1661 -0.8571 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169036141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:43 Heat of formation + Delta-G solvation = -17.236123 kcal Electronic energy + Delta-G solvation = -23009.410858 eV Core-core repulsion = 19670.996234 eV Total energy + Delta-G solvation = -3338.414624 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.47080 -39.68181 -37.45327 -36.62595 -34.04288 -32.31018 -31.12787 -30.53263 -28.57111 -27.35624 -25.17192 -23.66800 -22.62201 -21.83148 -20.63120 -19.96791 -19.04068 -18.94276 -18.53432 -17.68429 -16.75184 -16.33633 -15.85527 -14.75794 -14.53009 -14.37264 -13.84475 -13.62944 -13.17058 -13.00039 -12.95498 -12.69510 -12.26393 -12.12098 -11.76647 -11.72955 -11.42578 -11.31580 -11.30376 -11.18890 -11.10276 -11.06053 -10.82624 -10.69594 -10.60540 -10.12325 -9.93393 -9.67573 -9.10921 -8.96791 -8.55562 -8.04807 -6.09608 -4.07974 0.31392 1.45332 3.21308 3.31760 3.34469 3.66583 3.83942 4.01523 4.19463 4.37277 4.42312 4.56402 4.74790 5.10260 5.16484 5.17718 5.21044 5.25550 5.36047 5.50904 5.55873 5.57334 5.76820 5.80344 5.85768 5.90324 5.98721 6.03082 6.07654 6.12875 6.15720 6.30126 6.38674 6.69140 6.77850 6.86875 7.17450 7.35366 7.36924 7.43868 7.58898 7.75943 8.51253 8.95301 9.53242 11.04028 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.030650 B = 0.003686 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.311972 B = 7594.815150 C = 8102.858119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.073 0.927 9 C 0.013 3.987 10 C -0.116 4.116 11 C 0.051 3.949 12 N -0.526 5.526 13 C 0.081 3.919 14 H 0.042 0.958 15 C -0.117 4.117 16 C -0.113 4.113 17 C -0.103 4.103 18 H 0.090 0.910 19 C -0.007 4.007 20 N -0.016 5.016 21 O -0.151 6.151 22 O -0.178 6.178 23 C -0.109 4.109 24 C 0.056 3.944 25 C -0.096 4.096 26 H 0.263 0.737 27 H 0.021 0.979 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.024 0.976 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.140 0.860 37 H 0.131 0.869 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.263 -2.913 -6.215 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.206 1.206 5 H -0.226 1.226 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.091 0.909 9 C -0.006 4.006 10 C -0.154 4.154 11 C -0.077 4.077 12 N -0.251 5.251 13 C -0.028 4.028 14 H 0.060 0.940 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.123 4.123 18 H 0.108 0.892 19 C -0.124 4.124 20 N 0.506 4.494 21 O -0.374 6.374 22 O -0.393 6.393 23 C -0.148 4.148 24 C -0.071 4.071 25 C -0.134 4.134 26 H 0.073 0.927 27 H 0.039 0.961 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 18.304 -2.582 -6.292 19.526 hybrid contribution 0.859 1.473 0.538 1.788 sum 19.163 -1.109 -5.753 20.038 Atomic orbital electron populations 1.69900 1.06270 1.26848 1.51079 1.25035 0.94669 0.98986 0.94635 0.86847 0.79802 0.83769 0.77796 1.20632 1.22554 1.19324 1.21069 0.88872 0.94407 1.50462 0.90861 1.19178 0.96628 0.92016 0.92735 1.22013 0.91325 0.99936 1.02085 1.22264 0.98303 0.87840 0.99247 1.62139 1.09393 1.14839 1.38744 1.22216 0.89084 0.95165 0.96368 0.94002 1.22229 1.00703 0.96400 0.96187 1.22521 1.00501 0.93889 0.98116 1.22412 1.00974 0.98861 0.90033 0.89200 1.24705 0.91058 0.98592 0.98017 1.44776 1.02882 1.02217 0.99531 1.94543 1.81232 0.97828 1.63846 1.94572 1.34925 1.72768 1.37080 1.22536 0.96496 0.97639 0.98107 1.22203 0.98105 0.97546 0.89288 1.21492 0.91291 0.99267 1.01328 0.92719 0.96140 0.91289 0.93457 0.95806 0.91753 0.91892 0.89811 0.89827 0.90877 0.84244 0.85133 0.89284 0.91071 0.95673 0.91638 0.92372 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.65 16 2 C 0.07 1.93 5.45 -17.82 -0.10 1.83 16 3 Si 0.89 21.60 24.37 -169.99 -4.14 17.45 16 4 H -0.28 -6.57 6.90 56.52 0.39 -6.18 16 5 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.27 -6.25 6.52 56.52 0.37 -5.88 16 7 C -0.51 -14.05 9.14 -34.44 -0.31 -14.37 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.01 0.30 1.75 -91.65 -0.16 0.14 16 10 C -0.12 -2.38 4.84 -26.65 -0.13 -2.51 16 11 C 0.05 0.83 5.08 -3.84 -0.02 0.81 16 12 N -0.53 -7.70 4.39 -225.36 -0.99 -8.69 16 13 C 0.08 0.91 2.72 -66.59 -0.18 0.73 16 14 H 0.04 0.49 8.09 -51.93 -0.42 0.07 16 15 C -0.12 -1.16 5.94 -25.61 -0.15 -1.32 16 16 C -0.11 -0.99 5.09 -25.07 -0.13 -1.12 16 17 C -0.10 -0.80 3.02 -88.62 -0.27 -1.06 16 18 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 19 C -0.01 -0.05 5.99 -4.04 -0.02 -0.07 16 20 N -0.02 -0.16 4.23 -10.61 -0.04 -0.20 16 21 O -0.15 -1.73 16.40 -29.46 -0.48 -2.21 16 22 O -0.18 -2.09 19.22 -29.46 -0.57 -2.65 16 23 C -0.11 -0.98 4.51 -25.07 -0.11 -1.09 16 24 C 0.06 0.87 5.26 -3.84 -0.02 0.85 16 25 C -0.10 -1.83 5.32 -26.65 -0.14 -1.97 16 26 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.02 0.49 7.19 -51.93 -0.37 0.11 16 28 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 29 H 0.05 1.03 3.40 -51.93 -0.18 0.86 16 30 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.90 5.96 -51.93 -0.31 0.59 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.94 7.23 -51.93 -0.38 0.56 16 34 H 0.08 0.75 6.95 -51.93 -0.36 0.39 16 35 H 0.07 0.66 8.02 -51.93 -0.42 0.25 16 36 H 0.14 0.80 8.10 -51.93 -0.42 0.38 16 37 H 0.13 0.67 8.11 -51.93 -0.42 0.25 16 38 H 0.09 0.85 6.83 -51.93 -0.35 0.49 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.89 6.98 -51.93 -0.36 0.53 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 325.48 15.07 4.90 4.90 Total: -1.00 -30.42 325.48 -9.27 -39.69 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -6.97 Total: -2.49 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -1.75 Total: -19.16 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.26 Total: -35.55 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -1.05 Total: -4.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.14 Total: 17.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.42 -9.27 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169036141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.456 kcal (2) G-P(sol) polarization free energy of solvation -30.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds