Wall clock time and date at job start Tue Mar 31 2020 06:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00153 * 2 1 4 4 H 1.48500 * 109.46947 * 240.00009 * 3 2 1 5 5 H 1.48507 * 109.46848 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47092 * 119.99709 * 3 2 1 7 7 C 1.37875 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00475 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99821 * 0.02562 * 7 2 1 10 10 C 1.53124 * 109.52566 * 180.02562 * 9 7 2 11 11 C 1.53032 * 109.28012 * 177.55932 * 10 9 7 12 12 N 1.46846 * 109.52260 * 300.82015 * 11 10 9 13 13 C 1.46902 * 111.00204 * 185.84105 * 12 11 10 14 14 H 1.09000 * 110.67031 * 51.76352 * 13 12 11 15 15 C 1.54892 * 110.75639 * 288.33091 * 13 12 11 16 16 C 1.54265 * 104.19641 * 203.73880 * 15 13 12 17 17 C 1.53872 * 106.59645 * 23.60980 * 16 15 13 18 18 H 1.09007 * 110.03075 * 240.71353 * 17 16 15 19 19 C 1.53008 * 110.03199 * 119.28605 * 17 16 15 20 20 N 1.46493 * 109.47010 * 67.83161 * 19 17 16 21 21 O 1.21799 * 120.00618 * 45.00211 * 20 19 17 22 22 O 1.21807 * 119.99639 * 224.99794 * 20 19 17 23 23 C 1.54263 * 106.60076 * 359.97438 * 17 16 15 24 24 C 1.46846 * 111.19997 * 61.74591 * 12 11 10 25 25 C 1.53040 * 109.51964 * 298.25655 * 24 12 11 26 26 H 0.96994 * 119.99901 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.52564 * 59.87053 * 9 7 2 28 28 H 1.08999 * 109.49853 * 57.61556 * 10 9 7 29 29 H 1.08994 * 109.53481 * 297.52347 * 10 9 7 30 30 H 1.09001 * 109.46314 * 180.80749 * 11 10 9 31 31 H 1.08999 * 109.45415 * 60.83229 * 11 10 9 32 32 H 1.09001 * 110.48588 * 322.41758 * 15 13 12 33 33 H 1.09000 * 110.48484 * 85.05961 * 15 13 12 34 34 H 1.08998 * 110.03587 * 264.32345 * 16 15 13 35 35 H 1.08995 * 110.07195 * 142.91305 * 16 15 13 36 36 H 1.09001 * 109.46973 * 187.83139 * 19 17 16 37 37 H 1.08993 * 109.46904 * 307.82685 * 19 17 16 38 38 H 1.09001 * 110.48563 * 217.71064 * 23 17 16 39 39 H 1.08999 * 110.48485 * 95.07207 * 23 17 16 40 40 H 1.08996 * 109.46231 * 58.27402 * 24 12 11 41 41 H 1.09004 * 109.46418 * 178.24241 * 24 12 11 42 42 H 1.09004 * 109.50602 * 299.23671 * 25 24 12 43 43 H 1.09001 * 109.53370 * 179.14510 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2450 -3.6640 0.0018 11 6 1.4750 -4.9851 0.0633 12 7 0.6533 -5.0180 1.2799 13 6 0.0069 -6.3270 1.4434 14 1 0.7406 -7.1299 1.3724 15 6 -1.1221 -6.5158 0.3999 16 6 -2.0591 -7.5601 1.0411 17 6 -1.8265 -7.4853 2.5603 18 1 -1.4683 -8.4458 2.9310 19 6 -3.1255 -7.0999 3.2710 20 7 -4.0930 -8.1928 3.1465 21 8 -3.7406 -9.3430 3.3375 22 8 -5.2500 -7.9513 2.8520 23 6 -0.7558 -6.3986 2.7892 24 6 -0.3404 -3.9369 1.2789 25 6 0.3753 -2.5844 1.2537 26 1 -0.4850 0.8400 -0.0004 27 1 0.6226 -2.5570 -0.8882 28 1 2.8991 -3.5831 0.8700 29 1 2.8433 -3.6335 -0.9087 30 1 2.1803 -5.8160 0.0789 31 1 0.8314 -5.0713 -0.8121 32 1 -1.6517 -5.5772 0.2368 33 1 -0.7152 -6.8933 -0.5382 34 1 -1.8139 -8.5569 0.6745 35 1 -3.0975 -7.3227 0.8102 36 1 -2.9213 -6.9138 4.3254 37 1 -3.5351 -6.1983 2.8157 38 1 -0.0822 -6.6905 3.5949 39 1 -1.2260 -5.4408 3.0120 40 1 -0.9756 -4.0282 0.3978 41 1 -0.9538 -4.0065 2.1773 42 1 1.0000 -2.4866 2.1416 43 1 -0.3622 -1.7820 1.2376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169036143.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:47 Heat of formation + Delta-G solvation = -23.889537 kcal Electronic energy + Delta-G solvation = -23031.544299 eV Core-core repulsion = 19692.841161 eV Total energy + Delta-G solvation = -3338.703138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.42341 -39.72145 -37.17332 -36.59335 -33.96358 -32.16557 -30.67458 -29.93531 -28.81263 -27.02099 -25.09768 -23.62559 -22.57605 -22.09156 -20.44262 -19.93069 -18.89621 -18.56403 -18.13494 -17.92309 -16.45785 -16.09841 -15.74674 -14.62309 -14.44571 -13.86905 -13.73001 -13.53824 -13.38827 -13.03643 -12.65941 -12.44360 -12.05049 -11.77800 -11.67237 -11.49373 -11.35839 -11.30985 -11.24166 -11.16135 -10.93608 -10.85281 -10.76348 -10.74113 -10.47686 -10.18878 -9.97284 -9.46910 -9.02077 -8.76096 -8.33529 -7.81039 -6.01566 -4.06860 0.37607 1.52858 3.29748 3.34508 3.37297 3.71427 3.89858 4.08492 4.41447 4.42898 4.48459 4.73599 4.77072 5.10706 5.16236 5.24780 5.29143 5.35136 5.39606 5.58017 5.67837 5.73798 5.79198 5.90450 5.96242 6.00309 6.08651 6.12286 6.22486 6.27530 6.55328 6.57164 6.79702 7.01869 7.08746 7.36381 7.40621 7.53638 7.60526 7.76843 7.99240 8.09820 8.43785 8.96568 9.57778 11.04593 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.031204 B = 0.003509 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.100577 B = 7978.565700 C = 8499.532476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.107 4.107 11 C 0.061 3.939 12 N -0.525 5.525 13 C 0.083 3.917 14 H 0.087 0.913 15 C -0.162 4.162 16 C -0.123 4.123 17 C -0.102 4.102 18 H 0.102 0.898 19 C -0.009 4.009 20 N -0.014 5.014 21 O -0.162 6.162 22 O -0.171 6.171 23 C -0.110 4.110 24 C 0.051 3.949 25 C -0.105 4.105 26 H 0.260 0.740 27 H 0.020 0.980 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.026 0.974 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.028 0.972 41 H 0.056 0.944 42 H 0.043 0.957 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.024 -14.303 5.247 15.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.030 3.970 10 C -0.145 4.145 11 C -0.066 4.066 12 N -0.248 5.248 13 C -0.026 4.026 14 H 0.105 0.895 15 C -0.201 4.201 16 C -0.161 4.161 17 C -0.121 4.121 18 H 0.120 0.880 19 C -0.126 4.126 20 N 0.508 4.492 21 O -0.383 6.383 22 O -0.389 6.389 23 C -0.148 4.148 24 C -0.076 4.076 25 C -0.143 4.143 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.346 -13.477 5.709 15.013 hybrid contribution -0.362 0.656 -0.678 1.010 sum -3.707 -12.821 5.031 14.263 Atomic orbital electron populations 1.69856 1.05870 1.26445 1.51024 1.24960 0.94842 0.99006 0.95150 0.86694 0.79638 0.83278 0.78593 1.20364 1.21354 1.20302 1.21174 0.92865 0.90688 1.50257 0.92814 1.18668 0.92676 0.91754 0.93880 1.21688 0.98735 0.93733 1.00345 1.22097 0.95614 0.99286 0.89620 1.62095 1.23088 1.01351 1.38301 1.22654 0.94014 0.93135 0.92810 0.89530 1.23103 0.97896 0.99454 0.99669 1.22237 1.00050 1.00659 0.93185 1.22160 0.91650 1.02163 0.96158 0.87952 1.24870 0.90987 0.89810 1.06902 1.44786 1.02937 1.03963 0.97550 1.94536 1.83903 1.07363 1.52507 1.94579 1.04451 1.90252 1.49592 1.22470 0.95823 0.97685 0.98817 1.22397 0.93501 0.93031 0.98643 1.21674 1.00216 0.92930 0.99464 0.93041 0.96216 0.92484 0.93171 0.92468 0.95612 0.90238 0.91341 0.90811 0.92170 0.84452 0.84886 0.90122 0.89957 0.95382 0.92580 0.93867 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.87 11.37 55.43 0.63 -24.24 16 2 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.75 8.56 -34.44 -0.29 -14.04 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.17 2.16 -91.65 -0.20 0.97 16 10 C -0.11 -2.15 5.32 -26.65 -0.14 -2.30 16 11 C 0.06 1.02 5.24 -3.84 -0.02 1.00 16 12 N -0.53 -8.30 4.68 -224.33 -1.05 -9.35 16 13 C 0.08 1.01 2.97 -65.73 -0.20 0.82 16 14 H 0.09 1.00 8.07 -51.93 -0.42 0.58 16 15 C -0.16 -1.89 5.51 -25.07 -0.14 -2.03 16 16 C -0.12 -1.22 6.29 -25.62 -0.16 -1.38 16 17 C -0.10 -0.88 2.82 -89.50 -0.25 -1.13 16 18 H 0.10 0.85 7.67 -51.93 -0.40 0.45 16 19 C -0.01 -0.07 5.44 -4.04 -0.02 -0.09 16 20 N -0.01 -0.15 3.99 -10.62 -0.04 -0.20 16 21 O -0.16 -1.99 18.33 -29.46 -0.54 -2.53 16 22 O -0.17 -2.20 19.22 -29.46 -0.57 -2.77 16 23 C -0.11 -1.08 5.86 -25.09 -0.15 -1.22 16 24 C 0.05 0.90 4.64 -3.83 -0.02 0.89 16 25 C -0.10 -2.34 5.12 -26.65 -0.14 -2.47 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.84 8.07 -51.93 -0.42 0.42 16 31 H 0.03 0.44 7.72 -51.93 -0.40 0.04 16 32 H 0.08 1.06 5.64 -51.93 -0.29 0.76 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.63 7.61 -51.93 -0.40 0.23 16 36 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.13 1.01 8.10 -51.93 -0.42 0.59 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.86 5.50 -51.93 -0.29 0.57 16 40 H 0.03 0.51 6.21 -51.93 -0.32 0.19 16 41 H 0.06 0.88 5.84 -51.93 -0.30 0.58 16 42 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.09 2.31 6.17 -51.93 -0.32 1.99 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -28.38 331.50 -10.32 -38.70 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.90 Total: -1.12 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -1.82 Total: -19.42 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: -0.46 Total: -33.78 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -1.11 Total: -5.30 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.38 -10.32 -38.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169036143.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.806 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds