Wall clock time and date at job start Tue Mar 31 2020 06:06:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00228 * 2 1 4 4 H 1.48494 * 109.47353 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47108 * 300.00342 * 3 2 1 6 6 H 1.48501 * 109.47241 * 60.00103 * 3 2 1 7 7 C 1.37882 * 119.99800 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00124 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.53111 * 109.52626 * 180.02562 * 9 7 2 11 11 C 1.53034 * 109.28269 * 177.55741 * 10 9 7 12 12 N 1.46843 * 109.52764 * 300.82584 * 11 10 9 13 13 C 1.46891 * 111.00354 * 185.83544 * 12 11 10 14 14 H 1.09006 * 110.43855 * 298.91194 * 13 12 11 15 15 C 1.54892 * 110.48688 * 61.45192 * 13 12 11 16 16 C 1.54891 * 102.74959 * 156.75472 * 15 13 12 17 17 C 1.54266 * 104.31343 * 321.99283 * 16 15 13 18 18 H 1.09004 * 110.03276 * 264.39171 * 17 16 15 19 19 C 1.52992 * 110.03482 * 142.96208 * 17 16 15 20 20 N 1.46502 * 109.47426 * 66.45421 * 19 17 16 21 21 O 1.21801 * 119.99776 * 44.99448 * 20 19 17 22 22 O 1.21796 * 119.99868 * 225.00482 * 20 19 17 23 23 C 1.54224 * 106.42656 * 23.64256 * 17 16 15 24 24 C 1.46846 * 111.19827 * 61.73726 * 12 11 10 25 25 C 1.53043 * 109.52306 * 298.26073 * 24 12 11 26 26 H 0.96993 * 120.00160 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.52128 * 59.87587 * 9 7 2 28 28 H 1.09004 * 109.50138 * 57.62195 * 10 9 7 29 29 H 1.09001 * 109.50795 * 297.50484 * 10 9 7 30 30 H 1.09002 * 109.46899 * 180.80402 * 11 10 9 31 31 H 1.09009 * 109.44841 * 60.83679 * 11 10 9 32 32 H 1.09000 * 110.75513 * 38.44331 * 15 13 12 33 33 H 1.09002 * 110.75596 * 275.07042 * 15 13 12 34 34 H 1.09002 * 110.48740 * 80.73781 * 16 15 13 35 35 H 1.08998 * 110.48604 * 203.24665 * 16 15 13 36 36 H 1.08999 * 109.47532 * 186.45865 * 19 17 16 37 37 H 1.09002 * 109.47053 * 306.45390 * 19 17 16 38 38 H 1.09009 * 110.00234 * 240.69061 * 23 17 16 39 39 H 1.08998 * 110.06034 * 119.30842 * 23 17 16 40 40 H 1.09004 * 109.46490 * 58.27172 * 24 12 11 41 41 H 1.09000 * 109.46661 * 178.24730 * 24 12 11 42 42 H 1.08993 * 109.50272 * 299.23684 * 25 24 12 43 43 H 1.09000 * 109.50075 * 179.11750 * 25 24 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2449 -3.6639 -0.0005 11 6 1.4751 -4.9851 0.0610 12 7 0.6542 -5.0187 1.2781 13 6 0.0080 -6.3277 1.4414 14 1 -0.6522 -6.5340 0.5989 15 6 1.0725 -7.4440 1.5820 16 6 0.2985 -8.5630 2.3223 17 6 -0.5919 -7.8080 3.3307 18 1 -0.1015 -7.7657 4.3033 19 6 -1.9480 -8.5048 3.4568 20 7 -1.7647 -9.8232 4.0688 21 8 -1.0459 -9.9471 5.0443 22 8 -2.3308 -10.7953 3.6020 23 6 -0.7768 -6.3839 2.7684 24 6 -0.3395 -3.9375 1.2783 25 6 0.3762 -2.5850 1.2532 26 1 -0.4850 0.8400 0.0004 27 1 0.6220 -2.5567 -0.8890 28 1 2.8996 -3.5836 0.8672 29 1 2.8421 -3.6328 -0.9118 30 1 2.1803 -5.8162 0.0756 31 1 0.8308 -5.0709 -0.8141 32 1 1.9173 -7.0992 2.1782 33 1 1.4042 -7.7871 0.6020 34 1 -0.3146 -9.1303 1.6220 35 1 0.9903 -9.2240 2.8444 36 1 -2.6090 -7.9034 4.0808 37 1 -2.3898 -8.6219 2.4672 38 1 -0.3772 -5.6512 3.4697 39 1 -1.8334 -6.1882 2.5860 40 1 -0.9753 -4.0283 0.3976 41 1 -0.9522 -4.0075 2.1771 42 1 1.0015 -2.4877 2.1406 43 1 -0.3619 -1.7830 1.2376 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169036145.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:52 Heat of formation + Delta-G solvation = -29.141172 kcal Electronic energy + Delta-G solvation = -22794.866704 eV Core-core repulsion = 19455.935838 eV Total energy + Delta-G solvation = -3338.930866 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.44404 -39.48055 -37.27884 -36.62735 -33.94496 -32.22886 -30.91066 -29.96144 -28.56183 -27.10638 -25.09087 -23.70086 -22.25828 -21.93655 -20.46531 -19.79247 -18.98227 -18.77057 -18.52481 -17.78761 -16.57820 -16.06234 -15.43238 -14.74842 -14.48702 -14.09679 -13.78172 -13.39036 -13.15211 -13.03131 -12.55207 -12.51237 -12.12398 -11.78889 -11.69634 -11.55494 -11.43910 -11.27309 -11.11275 -11.02416 -11.00378 -10.94682 -10.85880 -10.69505 -10.41344 -10.25752 -10.00246 -9.48467 -8.99313 -8.74482 -8.33503 -7.86428 -6.01264 -4.06333 0.34403 1.49365 3.27483 3.35870 3.39972 3.70306 3.87513 4.12050 4.31741 4.40436 4.42381 4.50783 4.97730 5.11775 5.13563 5.25682 5.29219 5.35760 5.40737 5.57268 5.69475 5.75451 5.78830 5.90944 5.98763 6.03028 6.08603 6.09755 6.21955 6.26290 6.52806 6.57607 6.80158 7.03049 7.10006 7.37199 7.38019 7.54745 7.62654 7.78172 8.00103 8.10879 8.44497 8.97639 9.58350 11.04989 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.042964 B = 0.003138 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.556291 B = 8920.904956 C = 9227.607656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.048 3.952 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.527 5.527 13 C 0.078 3.922 14 H 0.041 0.959 15 C -0.111 4.111 16 C -0.129 4.129 17 C -0.100 4.100 18 H 0.105 0.895 19 C -0.009 4.009 20 N -0.014 5.014 21 O -0.160 6.160 22 O -0.173 6.173 23 C -0.107 4.107 24 C 0.056 3.944 25 C -0.104 4.104 26 H 0.258 0.742 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.022 0.978 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.021 0.979 41 H 0.056 0.944 42 H 0.043 0.957 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 -15.504 5.122 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.073 0.927 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.068 4.068 12 N -0.252 5.252 13 C -0.031 4.031 14 H 0.059 0.941 15 C -0.149 4.149 16 C -0.167 4.167 17 C -0.119 4.119 18 H 0.123 0.877 19 C -0.126 4.126 20 N 0.508 4.492 21 O -0.381 6.381 22 O -0.390 6.390 23 C -0.145 4.145 24 C -0.072 4.072 25 C -0.142 4.142 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.041 0.959 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.155 0.845 37 H 0.149 0.851 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.525 -14.591 5.166 15.875 hybrid contribution -0.300 0.624 -0.637 0.941 sum -3.824 -13.967 4.529 15.173 Atomic orbital electron populations 1.69879 1.05878 1.26205 1.51251 1.24972 0.94845 0.99048 0.95201 0.86576 0.80209 0.83943 0.77510 1.19814 1.21147 1.21069 1.21251 0.92932 0.90649 1.49918 0.92701 1.18683 0.92708 0.91805 0.93902 1.21677 0.98714 0.93703 1.00323 1.22129 0.95797 0.99398 0.89450 1.62132 1.23364 1.01254 1.38432 1.22428 0.94470 0.90637 0.95595 0.94130 1.22509 0.98345 0.93592 1.00405 1.22547 0.98664 0.98093 0.97381 1.22198 0.91208 0.95991 1.02519 0.87715 1.24911 1.03395 0.81424 1.02843 1.44774 0.98636 1.05427 1.00385 1.94554 1.34240 1.92773 1.16541 1.94565 1.47540 1.31910 1.65022 1.22255 1.00322 0.93875 0.98060 1.22302 0.93161 0.93142 0.98554 1.21663 1.00203 0.92913 0.99450 0.93169 0.96236 0.92455 0.93203 0.92226 0.95944 0.89766 0.91382 0.91628 0.90764 0.84518 0.85092 0.88883 0.91551 0.96094 0.92578 0.93798 0.88981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.97 11.37 55.43 0.63 -24.34 16 2 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -13.74 8.56 -34.44 -0.29 -14.03 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.15 2.16 -91.65 -0.20 0.95 16 10 C -0.11 -2.15 5.32 -26.66 -0.14 -2.29 16 11 C 0.06 1.01 5.30 -3.84 -0.02 0.99 16 12 N -0.53 -8.45 4.49 -224.71 -1.01 -9.46 16 13 C 0.08 0.96 2.58 -66.06 -0.17 0.79 16 14 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 15 C -0.11 -1.19 5.29 -24.74 -0.13 -1.32 16 16 C -0.13 -1.18 6.15 -25.07 -0.15 -1.33 16 17 C -0.10 -0.84 2.82 -89.32 -0.25 -1.10 16 18 H 0.10 0.93 7.71 -51.93 -0.40 0.53 16 19 C -0.01 -0.07 5.49 -4.04 -0.02 -0.09 16 20 N -0.01 -0.14 4.02 -10.61 -0.04 -0.19 16 21 O -0.16 -1.92 18.35 -29.46 -0.54 -2.46 16 22 O -0.17 -2.08 19.22 -29.46 -0.57 -2.65 16 23 C -0.11 -1.06 4.85 -25.43 -0.12 -1.19 16 24 C 0.06 1.01 5.26 -3.83 -0.02 0.99 16 25 C -0.10 -2.35 5.12 -26.65 -0.14 -2.49 16 26 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.88 6.77 -51.93 -0.35 0.53 16 31 H 0.02 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.71 7.81 -51.93 -0.41 0.30 16 34 H 0.06 0.58 7.78 -51.93 -0.40 0.17 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.14 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.13 0.80 8.01 -51.93 -0.42 0.38 16 38 H 0.09 1.05 7.67 -51.92 -0.40 0.65 16 39 H 0.07 0.58 7.69 -51.93 -0.40 0.18 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.91 6.72 -51.93 -0.35 0.56 16 42 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.09 2.34 6.17 -51.93 -0.32 2.02 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -28.62 336.32 -10.45 -39.07 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -7.21 Total: -2.46 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -1.76 Total: -18.58 kcal Atomic # 7 Polarization: -33.57 SS G_CDS: -0.42 Total: -33.99 kcal Atomic # 8 Polarization: -4.00 SS G_CDS: -1.11 Total: -5.11 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.62 -10.45 -39.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169036145.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.932 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds