Wall clock time and date at job start Tue Mar 31 2020 05:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 5 5 N 1.29029 * 124.91758 * 300.02670 * 4 2 1 6 6 C 1.31780 * 117.12394 * 179.97438 * 5 4 2 7 7 C 1.33633 * 114.50459 * 0.02562 * 6 5 4 8 8 C 1.50699 * 126.04278 * 179.97438 * 7 6 5 9 9 N 1.46889 * 109.47328 * 89.97018 * 8 7 6 10 10 C 1.46902 * 111.00382 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46879 * 325.00401 * 10 9 8 12 12 C 1.52997 * 109.46980 * 85.00214 * 10 9 8 13 13 C 1.53004 * 109.47131 * 205.00568 * 10 9 8 14 14 C 1.52996 * 109.47410 * 64.99979 * 13 10 9 15 15 C 1.50693 * 109.47362 * 180.02562 * 14 13 10 16 16 H 1.08001 * 119.99700 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00506 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99543 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00371 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47355 * 59.99501 * 19 17 15 21 21 H 1.48503 * 109.47371 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47123 * 299.99647 * 19 17 15 23 23 S 1.70979 * 124.91577 * 119.71855 * 4 2 1 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.08004 * 122.74459 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47463 * 209.98088 * 8 7 6 33 33 H 1.09009 * 109.46873 * 329.97494 * 8 7 6 34 34 H 1.00905 * 110.99995 * 56.05217 * 9 8 7 35 35 H 1.08999 * 109.46829 * 179.97438 * 12 10 9 36 36 H 1.08999 * 109.47372 * 300.00511 * 12 10 9 37 37 H 1.08998 * 109.47162 * 60.00360 * 12 10 9 38 38 H 1.09000 * 109.46780 * 184.99906 * 13 10 9 39 39 H 1.08997 * 109.46753 * 304.99730 * 13 10 9 40 40 H 1.09006 * 109.47049 * 300.00197 * 14 13 10 41 41 H 1.09001 * 109.47347 * 59.99629 * 14 13 10 42 42 H 0.96996 * 120.00307 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7795 -0.3535 2.4443 6 6 2.2986 -1.0884 3.4071 7 6 3.0306 -2.1224 2.9818 8 6 3.7401 -3.1252 3.8548 9 7 2.8400 -4.2507 4.1387 10 6 3.4991 -5.2503 4.9899 11 1 4.5570 -5.3053 4.7331 12 6 3.3510 -4.8469 6.4583 13 6 2.8488 -6.6174 4.7683 14 6 3.1048 -7.0772 3.3317 15 6 2.4637 -8.4234 3.1133 16 1 1.9277 -8.9032 3.9188 17 6 2.5623 -9.0430 1.8856 18 7 3.2155 -8.4588 0.9049 19 14 1.7671 -10.7113 1.6147 20 1 0.3041 -10.6060 1.8469 21 1 2.0156 -11.1577 0.2203 22 1 2.3488 -11.6965 2.5614 23 16 3.0139 -2.1103 1.2199 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 2.1457 -0.8722 4.4542 32 1 4.6284 -3.4911 3.3399 33 1 4.0329 -2.6492 4.7908 34 1 2.5031 -4.6687 3.2843 35 1 3.8397 -5.5888 7.0899 36 1 3.8143 -3.8730 6.6161 37 1 2.2931 -4.7919 6.7151 38 1 3.2769 -7.3402 5.4629 39 1 1.7750 -6.5409 4.9395 40 1 2.6767 -6.3543 2.6371 41 1 4.1785 -7.1536 3.1605 42 1 3.2853 -8.8948 0.0412 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488020.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:56 Heat of formation + Delta-G solvation = 11.513360 kcal Electronic energy + Delta-G solvation = -19544.563276 eV Core-core repulsion = 16650.148194 eV Total energy + Delta-G solvation = -2894.415082 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 282.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.75702 -37.35125 -35.55549 -33.46527 -32.14865 -29.63229 -28.67881 -27.32645 -26.02977 -25.08191 -23.55254 -21.83961 -21.38001 -19.63108 -18.59493 -18.08101 -16.45014 -15.72282 -15.35465 -14.92567 -14.63594 -14.47288 -14.27458 -14.18811 -13.58373 -13.00834 -12.83984 -12.59267 -12.40221 -12.37346 -12.24549 -11.76861 -11.60725 -11.45827 -11.35063 -11.27210 -11.17090 -10.97251 -10.87774 -10.52178 -10.35328 -9.79927 -9.48858 -9.31482 -9.17507 -9.06289 -8.69779 -8.37830 -8.07359 -6.02550 -4.04795 0.78707 1.42413 1.86436 2.92087 3.32184 3.36475 3.39214 4.07943 4.44269 4.59541 4.71152 4.89417 4.91817 5.03225 5.25808 5.33342 5.37274 5.46066 5.47143 5.62446 5.65999 5.68469 5.73093 5.77457 5.86353 5.92594 6.03715 6.08480 6.13336 6.30492 6.32635 6.47840 6.49089 6.86450 7.04014 7.38863 7.57395 7.74605 7.79966 7.82229 7.96280 8.39807 9.01401 9.59493 11.08635 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.015846 B = 0.003974 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.592498 B = 7044.469292 C = 8348.736601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.016 4.016 3 C -0.138 4.138 4 C 0.042 3.958 5 N -0.471 5.471 6 C 0.047 3.953 7 C -0.210 4.210 8 C 0.135 3.865 9 N -0.682 5.682 10 C 0.082 3.918 11 H 0.039 0.961 12 C -0.136 4.136 13 C -0.115 4.115 14 C 0.021 3.979 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.277 1.277 23 S 0.129 5.871 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.173 0.827 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.354 0.646 35 H 0.052 0.948 36 H 0.043 0.957 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.014 0.986 41 H 0.012 0.988 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 17.879 0.714 17.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.038 4.038 3 C -0.197 4.197 4 C -0.236 4.236 5 N -0.185 5.185 6 C -0.105 4.105 7 C -0.332 4.332 8 C 0.004 3.996 9 N -0.317 5.317 10 C -0.027 4.027 11 H 0.057 0.943 12 C -0.194 4.194 13 C -0.153 4.153 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 S 0.385 5.615 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.190 0.810 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.176 0.824 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.032 0.968 41 H 0.030 0.970 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.260 17.982 0.356 17.988 hybrid contribution 0.100 -1.274 0.058 1.280 sum -0.160 16.708 0.414 16.714 Atomic orbital electron populations 1.21798 0.92935 1.02547 1.02560 1.19795 0.96892 0.95880 0.91224 1.21786 1.01038 0.94224 1.02612 1.26982 1.01543 0.98104 0.96925 1.66172 1.22888 1.30836 0.98621 1.21605 0.96778 0.92443 0.99675 1.25939 1.08158 1.03364 0.95699 1.20283 0.92677 0.90190 0.96468 1.60689 1.37519 1.10315 1.23158 1.21641 0.96271 0.92192 0.92640 0.94259 1.21793 1.01961 0.99950 0.95718 1.21835 0.99944 0.92664 1.00813 1.19120 0.96684 0.96020 0.89804 1.21188 1.34021 1.03629 0.97051 0.92709 1.25015 0.95370 0.97800 0.96162 1.69943 1.41989 1.38586 1.02939 0.86661 0.79942 0.84322 0.77109 1.20206 1.21286 1.20262 1.84319 1.47374 1.25906 1.03901 0.91534 0.92345 0.91835 0.89464 0.91835 0.91545 0.92649 0.80995 0.94069 0.89374 0.82437 0.92890 0.93757 0.92289 0.92549 0.92397 0.96792 0.96965 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.17 37.16 0.34 -0.99 16 2 C -0.02 -0.16 3.35 -91.78 -0.31 -0.47 16 3 C -0.14 -1.19 9.17 37.16 0.34 -0.85 16 4 C 0.04 0.55 5.91 -13.46 -0.08 0.47 16 5 N -0.47 -6.66 10.53 -11.86 -0.12 -6.79 16 6 C 0.05 0.64 11.25 -19.19 -0.22 0.43 16 7 C -0.21 -2.98 6.11 -35.92 -0.22 -3.20 16 8 C 0.14 1.93 6.01 -4.98 -0.03 1.90 16 9 N -0.68 -11.38 6.30 -108.00 -0.68 -12.06 16 10 C 0.08 1.39 2.65 -67.71 -0.18 1.21 16 11 H 0.04 0.68 7.80 -51.93 -0.41 0.28 16 12 C -0.14 -1.93 9.41 37.16 0.35 -1.58 16 13 C -0.11 -2.34 4.74 -26.73 -0.13 -2.46 16 14 C 0.02 0.53 4.80 -27.89 -0.13 0.39 16 15 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 19 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 S 0.13 1.77 23.17 -107.50 -2.49 -0.72 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.17 2.07 8.06 -52.48 -0.42 1.64 16 32 H 0.04 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.09 1.11 7.44 -51.92 -0.39 0.72 16 34 H 0.35 6.75 6.46 -39.29 -0.25 6.50 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.01 0.37 6.43 -51.93 -0.33 0.03 16 41 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -29.98 356.71 -10.10 -40.07 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.22 Total: 1.97 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -0.67 Total: -18.59 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: -0.07 Total: -44.74 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -2.49 Total: -0.72 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.98 -10.10 -40.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488020.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.588 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds