Wall clock time and date at job start Tue Mar 31 2020 05:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21588 * 119.99628 * 359.97438 * 14 13 3 16 16 N 1.34767 * 120.00297 * 180.02562 * 14 13 3 17 17 C 1.39913 * 120.00515 * 179.97438 * 16 14 13 18 18 N 1.33361 * 126.24805 * 359.68275 * 17 16 14 19 19 N 1.28580 * 109.89484 * 179.81555 * 18 17 16 20 20 N 1.28941 * 109.61833 * 0.45974 * 19 18 17 21 21 C 1.46498 * 126.47128 * 179.74524 * 20 19 18 22 22 C 1.52998 * 109.47124 * 299.96850 * 21 20 19 23 23 C 1.53000 * 109.47364 * 59.97309 * 21 20 19 24 24 N 1.31647 * 126.25918 * 179.97438 * 17 16 14 25 25 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 26 26 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 27 27 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 29 29 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 32 32 H 0.97003 * 119.99842 * 359.97438 * 16 14 13 33 33 H 1.09009 * 109.46671 * 179.97438 * 21 20 19 34 34 H 1.09001 * 109.47299 * 180.02562 * 22 21 20 35 35 H 1.08998 * 109.47232 * 300.00292 * 22 21 20 36 36 H 1.08999 * 109.46880 * 60.00159 * 22 21 20 37 37 H 1.08995 * 109.47015 * 59.99765 * 23 21 20 38 38 H 1.09001 * 109.46925 * 179.97438 * 23 21 20 39 39 H 1.08999 * 109.46878 * 299.99986 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5056 2.2722 1.3738 11 1 6.3981 0.2106 2.6470 12 1 6.5923 0.1349 0.2312 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3416 2.6319 -0.4320 16 7 0.0783 3.2665 -2.5187 17 6 -1.1856 3.8546 -2.6384 18 7 -2.1323 3.8871 -1.6997 19 7 -3.1665 4.5097 -2.1427 20 7 -2.9549 4.8923 -3.3557 21 6 -3.8887 5.6271 -4.2125 22 6 -5.1640 4.8032 -4.4012 23 6 -4.2380 6.9646 -3.5569 24 7 -1.6595 4.4723 -3.7000 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8899 30 1 3.8292 -0.0558 2.9526 31 1 2.2719 2.1232 -1.9978 32 1 0.6978 3.2922 -3.2647 33 1 -3.4261 5.8078 -5.1829 34 1 -5.8587 5.3497 -5.0390 35 1 -4.9152 3.8503 -4.8683 36 1 -5.6266 4.6223 -3.4309 37 1 -3.3294 7.5516 -3.4226 38 1 -4.9324 7.5115 -4.1947 39 1 -4.7005 6.7838 -2.5866 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209980338.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:27 Heat of formation + Delta-G solvation = 104.861098 kcal Electronic energy + Delta-G solvation = -22212.704115 eV Core-core repulsion = 18808.336431 eV Total energy + Delta-G solvation = -3404.367683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.155 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.96203 -39.59860 -36.75978 -35.49613 -34.35116 -32.47994 -32.16580 -31.21279 -30.27569 -27.78983 -26.95114 -24.87704 -23.54999 -22.56111 -21.72526 -20.23756 -19.48133 -18.17117 -17.66865 -17.03629 -16.67297 -15.90948 -15.16144 -14.90355 -14.77637 -14.20417 -13.77032 -13.69843 -13.36699 -12.98453 -12.76776 -12.64476 -12.43163 -12.19241 -11.94981 -11.59874 -11.37248 -11.23960 -11.16220 -10.97923 -10.80184 -10.53761 -10.32293 -10.30090 -10.16828 -9.61356 -9.40881 -9.04354 -8.84108 -8.49696 -7.85235 -6.11854 -4.21439 1.12412 1.59872 2.51430 2.74673 3.26404 3.32016 3.33132 3.91049 4.00159 4.28931 4.35476 4.49605 4.52970 4.76690 5.04855 5.06090 5.19084 5.22762 5.24953 5.33896 5.54335 5.67726 5.81464 6.31639 6.44837 6.52185 6.56051 6.68259 6.89038 7.11414 7.30874 7.37537 7.44883 7.64561 7.82980 7.92814 8.18542 8.49201 8.71837 8.82851 9.19487 9.45957 10.93547 Molecular weight = 282.15amu Principal moments of inertia in cm(-1) A = 0.041280 B = 0.003326 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.130976 B = 8415.259341 C = 8714.672970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.129 4.129 3 C 0.288 3.712 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.712 5.712 14 C 0.689 3.311 15 O -0.534 6.534 16 N -0.639 5.639 17 C 0.451 3.549 18 N -0.277 5.277 19 N 0.005 4.995 20 N -0.206 5.206 21 C 0.164 3.836 22 C -0.166 4.166 23 C -0.166 4.166 24 N -0.346 5.346 25 H 0.052 0.948 26 H 0.037 0.963 27 H 0.022 0.978 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.266 0.734 31 H 0.387 0.613 32 H 0.417 0.583 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 9.350 -14.961 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.186 3.814 4 H 0.071 0.929 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.365 5.365 14 C 0.388 3.612 15 O -0.405 6.405 16 N -0.297 5.297 17 C 0.078 3.922 18 N -0.157 5.157 19 N 0.010 4.990 20 N -0.121 5.121 21 C 0.063 3.937 22 C -0.224 4.224 23 C -0.224 4.224 24 N -0.196 5.196 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.041 0.959 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.219 0.781 32 H 0.254 0.746 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.440 9.321 -13.674 21.318 hybrid contribution 2.148 -0.141 -0.976 2.364 sum -11.292 9.180 -14.649 20.649 Atomic orbital electron populations 1.21826 0.98132 0.98007 1.01429 1.21969 0.92771 0.99734 1.02285 1.18790 0.94072 0.88927 0.79596 0.92950 1.21168 0.90507 1.39446 1.06318 0.92054 1.24873 0.98616 0.94770 0.95344 1.69890 1.35238 1.37463 1.09179 0.86497 0.84775 0.78297 0.77446 1.20194 1.21128 1.20184 1.45810 1.12634 1.58491 1.19558 1.16068 0.84260 0.79270 0.81597 1.91055 1.50981 1.61932 1.36567 1.42072 1.11204 1.58346 1.18127 1.21276 0.89190 0.93478 0.88221 1.75825 0.96616 1.18631 1.24671 1.78430 1.19297 1.05807 0.95452 1.53474 1.09993 1.39275 1.09364 1.21648 0.87843 0.91153 0.93098 1.22235 0.95488 1.00567 1.04136 1.22236 1.03129 0.94453 1.02618 1.78780 0.94972 1.24984 1.20883 0.92928 0.94377 0.95933 0.95013 0.88189 0.92432 0.78080 0.74560 0.86450 0.89458 0.91490 0.90546 0.91475 0.89459 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.12 5.45 -26.73 -0.15 -3.27 16 3 C 0.29 7.15 2.24 -69.08 -0.15 7.00 16 4 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -13.90 8.73 -34.44 -0.30 -14.20 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.49 11.31 55.43 0.63 -23.87 16 9 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.71 -14.52 5.03 -59.81 -0.30 -14.82 16 14 C 0.69 14.17 7.10 -86.93 -0.62 13.55 16 15 O -0.53 -13.11 12.20 5.29 0.06 -13.05 16 16 N -0.64 -10.56 5.44 -17.17 -0.09 -10.66 16 17 C 0.45 7.93 8.97 -320.54 -2.88 5.05 16 18 N -0.28 -5.44 10.55 30.07 0.32 -5.12 16 19 N 0.01 0.09 12.99 60.35 0.78 0.87 16 20 N -0.21 -2.72 4.06 -4.89 -0.02 -2.74 16 21 C 0.16 1.28 3.97 -67.93 -0.27 1.01 16 22 C -0.17 -1.02 9.41 37.16 0.35 -0.67 16 23 C -0.17 -1.03 9.41 37.16 0.35 -0.68 16 24 N -0.35 -5.20 12.78 30.08 0.38 -4.81 16 25 H 0.05 1.29 7.84 -51.93 -0.41 0.89 16 26 H 0.04 0.87 5.64 -51.93 -0.29 0.57 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 2.68 5.96 -51.93 -0.31 2.37 16 30 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.39 6.61 8.55 -40.82 -0.35 6.26 16 32 H 0.42 5.21 8.84 -40.82 -0.36 4.85 16 33 H 0.12 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 328.04 15.07 4.94 4.94 Total: -1.00 -33.00 328.04 -7.22 -40.21 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.46 Total: 6.98 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: -3.44 Total: 6.67 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 1.70 Total: -61.14 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.06 Total: -13.05 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.00 -7.22 -40.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209980338.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.072 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds