Wall clock time and date at job start Tue Mar 31 2020 06:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 120.00220 * 2 1 4 4 H 1.48495 * 109.47426 * 240.00496 * 3 2 1 5 5 H 1.48500 * 109.46766 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46792 * 120.00003 * 3 2 1 7 7 C 1.37875 * 120.00141 * 180.02562 * 2 1 3 8 8 C 1.51265 * 120.85219 * 180.02562 * 7 2 1 9 9 C 1.53233 * 108.53788 * 231.32058 * 8 7 2 10 10 C 1.52964 * 109.40506 * 305.37408 * 9 8 7 11 11 H 1.09002 * 109.35266 * 303.52914 * 10 9 8 12 12 N 1.46497 * 109.41333 * 183.69867 * 10 9 8 13 13 C 1.34780 * 119.99566 * 84.64987 * 12 10 9 14 14 O 1.21280 * 120.00423 * 359.97438 * 13 12 10 15 15 C 1.50701 * 119.99795 * 180.02562 * 13 12 10 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 H 1.09004 * 109.50871 * 304.99943 * 16 15 13 18 18 C 1.53102 * 109.50936 * 184.91085 * 16 15 13 19 19 O 1.43018 * 109.25364 * 183.26268 * 18 16 15 20 20 C 1.43013 * 113.77981 * 58.60496 * 19 18 16 21 21 C 1.53105 * 109.25506 * 301.35075 * 20 19 18 22 22 N 1.47012 * 109.25966 * 56.84813 * 21 20 19 23 23 C 1.52964 * 109.81748 * 63.59478 * 10 9 8 24 24 C 1.51271 * 120.84648 * 359.97438 * 7 2 1 25 25 H 0.96996 * 119.99516 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.62529 * 351.03407 * 8 7 2 27 27 H 1.08999 * 109.62663 * 111.41817 * 8 7 2 28 28 H 1.08994 * 109.48794 * 185.39180 * 9 8 7 29 29 H 1.09000 * 109.47877 * 65.34786 * 9 8 7 30 30 H 0.96995 * 120.00423 * 264.64293 * 12 10 9 31 31 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 32 32 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 33 33 H 1.08998 * 109.50333 * 303.15417 * 18 16 15 34 34 H 1.09002 * 109.50014 * 63.28225 * 18 16 15 35 35 H 1.08999 * 109.51064 * 181.41587 * 20 19 18 36 36 H 1.09001 * 109.50499 * 61.28323 * 20 19 18 37 37 H 1.08993 * 109.50730 * 296.91244 * 21 20 19 38 38 H 1.08998 * 109.54135 * 176.80341 * 21 20 19 39 39 H 1.00906 * 110.99864 * 65.15948 * 22 21 20 40 40 H 1.08995 * 109.48039 * 56.37883 * 23 10 9 41 41 H 1.08999 * 109.48122 * 176.42234 * 23 10 9 42 42 H 1.08997 * 109.63112 * 8.96308 * 24 7 2 43 43 H 1.09001 * 109.78321 * 248.48274 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9912 -2.1308 -1.1345 10 6 3.3403 -3.5069 -0.9840 11 1 3.5739 -3.9111 0.0010 12 7 3.8605 -4.4071 -2.0159 13 6 5.0180 -5.0673 -1.8131 14 8 5.6290 -4.9156 -0.7765 15 6 5.5535 -5.9929 -2.8749 16 6 6.8695 -6.6100 -2.3971 17 1 7.5646 -5.8168 -2.1217 18 6 7.4763 -7.4540 -3.5212 19 8 8.6658 -8.0890 -3.0445 20 6 8.4541 -8.9316 -1.9085 21 6 7.8578 -8.1016 -0.7685 22 7 6.6147 -7.4666 -1.2298 23 6 1.8233 -3.3824 -1.1356 24 6 1.2677 -2.5151 -0.0005 25 1 -0.4849 0.8401 0.0004 26 1 3.8983 -0.2078 -0.1591 27 1 3.8772 -1.5974 0.9557 28 1 5.0752 -2.2345 -1.0891 29 1 3.7071 -1.6973 -2.0935 30 1 3.3720 -4.5282 -2.8451 31 1 4.8289 -6.7845 -3.0659 32 1 5.7281 -5.4310 -3.7925 33 1 6.7594 -8.2131 -3.8338 34 1 7.7197 -6.8117 -4.3676 35 1 9.4051 -9.3581 -1.5894 36 1 7.7654 -9.7338 -2.1736 37 1 8.5692 -7.3328 -0.4672 38 1 7.6418 -8.7503 0.0804 39 1 5.9101 -8.1587 -1.4361 40 1 1.5906 -2.9192 -2.0945 41 1 1.3710 -4.3731 -1.0909 42 1 0.2036 -2.3409 -0.1600 43 1 1.4169 -3.0208 0.9535 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220097469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:56 Heat of formation + Delta-G solvation = -98.212260 kcal Electronic energy + Delta-G solvation = -22738.434041 eV Core-core repulsion = 19396.508029 eV Total energy + Delta-G solvation = -3341.926013 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.15024 -39.06206 -36.73508 -34.95067 -33.57792 -32.70472 -31.49806 -29.64572 -28.60561 -26.92338 -26.04303 -23.33297 -22.08704 -21.47266 -21.13707 -19.82188 -19.40791 -17.09695 -16.56855 -16.16762 -15.85480 -15.78728 -15.53825 -15.28321 -14.75211 -14.45286 -14.21344 -13.45303 -13.08935 -12.83711 -12.69567 -12.63912 -12.31989 -12.02574 -11.95074 -11.61045 -11.47742 -11.41287 -11.23021 -10.97206 -10.75861 -10.65102 -10.44800 -10.16307 -9.99180 -9.71258 -9.39052 -8.94272 -8.79330 -8.46320 -8.32551 -8.23391 -6.09454 -3.99812 3.10759 3.30745 3.37079 3.39625 3.44151 3.65507 3.92179 4.40375 4.47398 4.65094 4.70251 4.81204 4.89245 5.05184 5.16927 5.18762 5.28547 5.33263 5.38492 5.48204 5.74971 5.79840 5.85291 5.94768 6.25274 6.50786 6.54566 6.73425 6.74469 6.77124 6.85596 6.92622 6.99749 7.09523 7.16850 7.31299 7.45848 7.66135 7.73509 7.80423 8.05704 8.39622 8.75357 8.97196 9.55895 11.00308 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.039650 B = 0.003273 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.009703 B = 8553.149880 C = 8731.066936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.076 3.924 3 Si 0.891 3.109 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.489 4.489 8 C -0.009 4.009 9 C -0.112 4.112 10 C 0.156 3.844 11 H 0.077 0.923 12 N -0.731 5.731 13 C 0.509 3.491 14 O -0.519 6.519 15 C -0.137 4.137 16 C 0.071 3.929 17 H 0.099 0.901 18 C 0.026 3.974 19 O -0.381 6.381 20 C 0.019 3.981 21 C 0.025 3.975 22 N -0.661 5.661 23 C -0.114 4.114 24 C 0.013 3.987 25 H 0.265 0.735 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.036 0.964 29 H 0.049 0.951 30 H 0.391 0.609 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.334 0.666 40 H 0.053 0.947 41 H 0.034 0.966 42 H 0.060 0.940 43 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.416 -16.047 -8.289 21.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.720 3.280 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.508 4.508 8 C -0.047 4.047 9 C -0.151 4.151 10 C 0.054 3.946 11 H 0.095 0.905 12 N -0.382 5.382 13 C 0.294 3.706 14 O -0.394 6.394 15 C -0.178 4.178 16 C -0.040 4.040 17 H 0.117 0.883 18 C -0.053 4.053 19 O -0.299 6.299 20 C -0.060 4.060 21 C -0.105 4.105 22 N -0.290 5.290 23 C -0.152 4.152 24 C -0.025 4.025 25 H 0.074 0.926 26 H 0.042 0.958 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.223 0.777 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.152 0.848 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 11.901 -15.258 -7.126 20.621 hybrid contribution 0.025 0.139 -1.158 1.167 sum 11.926 -15.119 -8.284 20.963 Atomic orbital electron populations 1.69823 1.06129 1.27036 1.49942 1.24832 0.94727 0.98546 0.94539 0.86649 0.79369 0.82959 0.79059 1.20028 1.21907 1.19973 1.20048 0.89358 0.91501 1.49879 1.19591 0.96544 0.94525 0.94038 1.21883 0.97282 0.95388 1.00584 1.20971 0.94229 0.88887 0.90561 0.90510 1.46417 1.24060 1.46359 1.21331 1.20225 0.81330 0.80833 0.88256 1.90727 1.57696 1.63636 1.27324 1.21691 0.97437 0.99610 0.99017 1.21945 0.96598 0.96224 0.89195 0.88272 1.23358 0.88069 0.96449 0.97440 1.88059 1.31799 1.63149 1.46880 1.23357 1.02332 0.92617 0.87660 1.22642 0.92546 0.98330 0.96957 1.60735 1.08933 1.24553 1.34764 1.21924 0.92600 0.98472 1.02202 1.19337 0.98643 0.92764 0.91733 0.92552 0.95756 0.96142 0.94524 0.93189 0.77660 0.89264 0.88510 0.93139 0.88204 0.88438 0.93329 0.89748 0.89630 0.84821 0.92846 0.94709 0.92174 0.97580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 12.73 55.43 0.71 -24.87 16 2 C 0.08 2.09 5.46 -17.82 -0.10 1.99 16 3 Si 0.89 21.52 26.80 -169.99 -4.56 16.97 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.49 -12.94 5.51 -98.92 -0.55 -13.49 16 8 C -0.01 -0.21 5.59 -27.49 -0.15 -0.37 16 9 C -0.11 -2.39 5.50 -26.63 -0.15 -2.54 16 10 C 0.16 3.07 2.35 -67.97 -0.16 2.91 16 11 H 0.08 1.70 7.58 -51.93 -0.39 1.30 16 12 N -0.73 -11.21 5.07 -53.84 -0.27 -11.48 16 13 C 0.51 7.74 7.65 -10.98 -0.08 7.66 16 14 O -0.52 -10.20 15.02 5.56 0.08 -10.11 16 15 C -0.14 -1.36 5.31 -27.88 -0.15 -1.51 16 16 C 0.07 0.76 2.18 -67.60 -0.15 0.61 16 17 H 0.10 1.32 7.96 -51.93 -0.41 0.90 16 18 C 0.03 0.22 6.29 37.21 0.23 0.46 16 19 O -0.38 -4.05 10.82 -35.23 -0.38 -4.43 16 20 C 0.02 0.16 7.01 37.21 0.26 0.42 16 21 C 0.03 0.24 6.76 -3.71 -0.03 0.21 16 22 N -0.66 -7.41 5.74 -106.45 -0.61 -8.02 16 23 C -0.11 -2.31 5.40 -26.61 -0.14 -2.45 16 24 C 0.01 0.32 5.97 -27.46 -0.16 0.16 16 25 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 26 H 0.02 0.58 5.17 -51.93 -0.27 0.31 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.39 4.80 8.60 -40.82 -0.35 4.45 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.33 3.18 8.79 -39.29 -0.35 2.84 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 1.61 7.07 -51.93 -0.37 1.24 16 43 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -31.84 335.98 -8.48 -40.32 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -7.19 Total: 2.51 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -1.32 Total: -5.94 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.18 Total: -44.37 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.30 Total: -14.55 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.56 Total: 16.97 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.84 -8.48 -40.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220097469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.895 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds