Wall clock time and date at job start Tue Mar 31 2020 05:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00251 * 2 1 4 4 H 1.48492 * 109.46956 * 95.30586 * 3 2 1 5 5 H 1.48499 * 109.47044 * 335.30603 * 3 2 1 6 6 H 1.48499 * 109.47140 * 215.30487 * 3 2 1 7 7 C 1.38809 * 119.99384 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00908 * 28.93722 * 7 2 1 9 9 N 1.36947 * 119.99557 * 208.93498 * 7 2 1 10 10 C 1.47428 * 125.64691 * 189.51217 * 9 7 2 11 11 C 1.55127 * 104.72045 * 155.81908 * 10 9 7 12 12 H 1.08992 * 110.90635 * 155.27799 * 11 10 9 13 13 N 1.46504 * 111.22223 * 279.17771 * 11 10 9 14 14 C 1.34777 * 119.99837 * 267.20482 * 13 11 10 15 15 O 1.21286 * 120.00039 * 359.97438 * 14 13 11 16 16 C 1.50704 * 120.00136 * 180.02562 * 14 13 11 17 17 C 1.52996 * 109.47146 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46996 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.46883 * 180.02562 * 18 17 16 20 20 C 1.52995 * 117.49659 * 243.74282 * 19 18 17 21 21 C 1.53002 * 117.49566 * 175.08862 * 19 18 17 22 22 C 1.55157 * 101.48520 * 37.29536 * 11 10 9 23 23 H 1.08996 * 110.72218 * 82.69603 * 22 11 10 24 24 O 1.42906 * 110.71594 * 205.96965 * 22 11 10 25 25 C 1.47018 * 125.64708 * 9.82086 * 9 7 2 26 26 H 0.96996 * 120.00591 * 184.81923 * 1 2 3 27 27 H 1.09000 * 110.36345 * 274.74730 * 10 9 7 28 28 H 1.09002 * 110.36384 * 37.07262 * 10 9 7 29 29 H 0.96999 * 120.00060 * 87.21439 * 13 11 10 30 30 H 1.09001 * 109.46972 * 300.00628 * 16 14 13 31 31 H 1.09000 * 109.46718 * 59.99971 * 16 14 13 32 32 H 1.08995 * 109.47534 * 300.00290 * 17 16 14 33 33 H 1.09000 * 109.47066 * 60.00515 * 17 16 14 34 34 H 1.09007 * 109.46908 * 300.00625 * 18 17 16 35 35 H 1.09000 * 109.46679 * 60.00417 * 18 17 16 36 36 H 1.08994 * 115.55109 * 29.42250 * 19 18 17 37 37 H 1.09006 * 117.50111 * 0.02562 * 20 19 18 38 38 H 1.09004 * 117.49799 * 145.01932 * 20 19 18 39 39 H 1.09003 * 117.49808 * 214.98094 * 21 19 18 40 40 H 1.09001 * 117.50050 * 359.97436 * 21 19 18 41 41 H 0.96707 * 113.99375 * 174.97536 * 24 22 11 42 42 H 1.08994 * 109.88192 * 300.43887 * 25 9 7 43 43 H 1.09007 * 109.88079 * 61.45267 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.6099 1.9816 1.3940 5 1 1.3962 2.6824 -0.5849 6 1 3.4873 1.4750 -0.8091 7 6 2.0101 -1.2022 -0.0005 8 1 1.5713 -2.0789 -0.4534 9 7 3.2514 -1.2765 0.5733 10 6 4.1769 -2.4197 0.4737 11 6 5.5832 -1.8104 0.7133 12 1 6.2748 -2.5642 1.0893 13 7 6.1045 -1.1845 -0.5044 14 6 6.8826 -1.8932 -1.3464 15 8 7.1516 -3.0489 -1.0956 16 6 7.4193 -1.2492 -2.5987 17 6 8.2664 -2.2628 -3.3706 18 6 8.8108 -1.6091 -4.6424 19 6 9.6574 -2.6229 -5.4145 20 6 11.1467 -2.3163 -5.5838 21 6 10.1995 -2.1961 -6.7801 22 6 5.2775 -0.7451 1.7991 23 1 5.2506 -1.2002 2.7891 24 8 6.2368 0.3131 1.7534 25 6 3.8790 -0.2320 1.3958 26 1 -0.4851 -0.8370 0.0706 27 1 3.9470 -3.1616 1.2385 28 1 4.1218 -2.8671 -0.5188 29 1 5.8897 -0.2600 -0.7047 30 1 6.5884 -0.9195 -3.2224 31 1 8.0351 -0.3908 -2.3305 32 1 9.0972 -2.5920 -2.7466 33 1 7.6509 -3.1214 -3.6388 34 1 7.9795 -1.2802 -5.2662 35 1 9.4262 -0.7503 -4.3746 36 1 9.3692 -3.6668 -5.2914 37 1 11.5235 -1.3926 -5.1446 38 1 11.8385 -3.1587 -5.5722 39 1 10.2684 -2.9594 -7.5553 40 1 9.9527 -1.1932 -7.1286 41 1 6.0472 1.0422 2.3597 42 1 3.9738 0.6875 0.8184 43 1 3.2773 -0.0501 2.2864 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001220185430.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:32 Heat of formation + Delta-G solvation = -45.408583 kcal Electronic energy + Delta-G solvation = -22495.920704 eV Core-core repulsion = 19156.284430 eV Total energy + Delta-G solvation = -3339.636274 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.80876 -38.30410 -37.73698 -35.37895 -33.85175 -33.69706 -31.97940 -29.25084 -28.04097 -27.43179 -24.01208 -22.74370 -22.47970 -20.92684 -20.62655 -20.39331 -19.71676 -17.65496 -17.16983 -16.85831 -15.99773 -15.82137 -15.48706 -15.12038 -14.62480 -14.35345 -14.13640 -13.70992 -13.51304 -13.14254 -12.68803 -12.50327 -12.36251 -12.22842 -11.90753 -11.75150 -11.73263 -11.33785 -11.21367 -11.16864 -10.87575 -10.80850 -10.49367 -10.40106 -10.05166 -10.04696 -9.62493 -9.47025 -9.26610 -8.73736 -8.49204 -7.15828 -6.43345 -3.24877 2.93571 3.32401 3.43039 3.44088 3.59466 3.62112 4.23905 4.43646 4.55071 4.69390 4.71674 4.83880 4.89238 5.03704 5.05263 5.12576 5.19376 5.24337 5.31930 5.39803 5.46004 5.52361 5.61824 5.65020 5.69675 5.76816 5.83329 5.87450 5.96768 6.04121 6.18599 6.23239 6.32794 6.34886 6.47541 6.49040 6.89134 7.60138 7.72575 7.87263 8.27142 8.54388 8.94748 9.49670 10.15531 11.05715 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.003761 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.952938 B = 7443.539805 C = 7897.831127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.014 4.014 3 Si 1.057 2.943 4 H -0.296 1.296 5 H -0.299 1.299 6 H -0.294 1.294 7 C -0.332 4.332 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.123 3.877 11 C 0.138 3.862 12 H 0.099 0.901 13 N -0.698 5.698 14 C 0.514 3.486 15 O -0.554 6.554 16 C -0.142 4.142 17 C -0.098 4.098 18 C -0.090 4.090 19 C -0.150 4.150 20 C -0.183 4.183 21 C -0.184 4.184 22 C 0.083 3.917 23 H 0.079 0.921 24 O -0.559 6.559 25 C 0.087 3.913 26 H 0.265 0.735 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.405 0.595 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.378 0.622 42 H 0.036 0.964 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.988 -0.291 -4.958 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.216 4.216 3 Si 0.890 3.110 4 H -0.224 1.224 5 H -0.226 1.226 6 H -0.222 1.222 7 C -0.458 4.458 8 H 0.097 0.903 9 N -0.331 5.331 10 C -0.004 4.004 11 C 0.032 3.968 12 H 0.116 0.884 13 N -0.347 5.347 14 C 0.300 3.700 15 O -0.432 6.432 16 C -0.182 4.182 17 C -0.136 4.136 18 C -0.128 4.128 19 C -0.168 4.168 20 C -0.220 4.220 21 C -0.221 4.221 22 C 0.023 3.977 23 H 0.096 0.904 24 O -0.364 6.364 25 C -0.038 4.038 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.240 0.760 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.225 0.775 42 H 0.053 0.947 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 19.143 0.128 -5.340 19.874 hybrid contribution -0.281 -0.762 0.422 0.915 sum 18.862 -0.634 -4.918 19.503 Atomic orbital electron populations 1.70880 1.06221 1.29460 1.48497 1.25771 0.96143 1.00641 0.98996 0.83923 0.74188 0.76955 0.75928 1.22422 1.22644 1.22169 1.20024 0.90017 0.98152 1.37625 0.90312 1.44669 1.16489 1.14020 1.57956 1.22134 0.86870 0.91366 1.00037 1.22246 0.96401 0.94259 0.83902 0.88355 1.45588 1.50366 1.16158 1.22635 1.20630 0.77959 0.86596 0.84773 1.90660 1.59727 1.17302 1.75553 1.21676 1.01284 1.00149 0.95043 1.21285 0.99398 0.97723 0.95216 1.21220 0.98755 0.96909 0.95897 1.22357 0.95320 1.00475 0.98630 1.23039 0.92970 1.03150 1.02797 1.22974 1.04848 1.02719 0.91599 1.23198 0.88337 0.88132 0.98079 0.90370 1.86465 1.50337 1.32737 1.66825 1.22372 0.92322 0.93555 0.95577 0.92472 0.94357 0.92697 0.76016 0.88868 0.89128 0.91197 0.91135 0.91436 0.91837 0.87715 0.88862 0.89069 0.89019 0.88869 0.77456 0.94652 0.93862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.99 13.70 55.49 0.76 -27.23 16 2 C -0.01 -0.41 5.41 -17.43 -0.09 -0.50 16 3 Si 1.06 25.71 24.74 -169.99 -4.21 21.50 16 4 H -0.30 -6.70 6.74 56.52 0.38 -6.32 16 5 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.29 -6.73 6.87 56.52 0.39 -6.34 16 7 C -0.33 -9.31 10.41 -15.06 -0.16 -9.46 16 8 H 0.08 2.36 8.06 -52.49 -0.42 1.93 16 9 N -0.60 -14.32 3.29 -169.93 -0.56 -14.88 16 10 C 0.12 2.51 6.95 -2.41 -0.02 2.49 16 11 C 0.14 2.42 3.31 -65.66 -0.22 2.20 16 12 H 0.10 1.68 7.54 -51.93 -0.39 1.29 16 13 N -0.70 -11.69 4.81 -51.61 -0.25 -11.94 16 14 C 0.51 8.33 7.83 -10.98 -0.09 8.24 16 15 O -0.55 -10.60 15.62 5.55 0.09 -10.52 16 16 C -0.14 -1.71 5.70 -27.88 -0.16 -1.86 16 17 C -0.10 -1.12 4.46 -26.73 -0.12 -1.24 16 18 C -0.09 -0.84 5.49 -26.73 -0.15 -0.99 16 19 C -0.15 -1.35 5.73 -90.62 -0.52 -1.87 16 20 C -0.18 -1.48 10.18 -26.70 -0.27 -1.75 16 21 C -0.18 -1.47 10.25 -26.70 -0.27 -1.75 16 22 C 0.08 1.34 4.12 -24.90 -0.10 1.23 16 23 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 24 O -0.56 -7.93 12.67 -35.23 -0.45 -8.37 16 25 C 0.09 1.79 4.76 -3.07 -0.01 1.78 16 26 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.41 6.67 8.39 -40.82 -0.34 6.33 16 30 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.07 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.55 7.88 -51.93 -0.41 0.14 16 36 H 0.10 0.98 8.07 -51.93 -0.42 0.56 16 37 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.38 3.81 9.11 45.56 0.42 4.22 16 42 H 0.04 0.77 3.62 -51.93 -0.19 0.58 16 43 H 0.04 0.92 8.00 -51.92 -0.42 0.50 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -33.04 347.06 -7.98 -41.03 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -6.42 Total: 8.67 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -2.18 Total: -3.48 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.05 Total: -54.06 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.36 Total: -18.89 kcal Atomic # 14 Polarization: 25.71 SS G_CDS: -4.21 Total: 21.50 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.04 -7.98 -41.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220185430.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.383 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds