Wall clock time and date at job start Tue Mar 31 2020 05:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46688 * 2 1 4 4 H 1.09002 * 110.38289 * 307.39695 * 3 2 1 5 5 O 1.43369 * 110.43048 * 69.92981 * 3 2 1 6 6 C 1.34301 * 108.65025 * 118.75641 * 5 3 2 7 7 C 1.50704 * 123.69629 * 180.27045 * 6 5 3 8 8 C 1.34435 * 112.61026 * 359.97438 * 6 5 3 9 9 O 1.36261 * 125.28323 * 180.02562 * 8 6 5 10 10 C 1.42893 * 117.00261 * 245.70769 * 9 8 6 11 11 C 1.53001 * 109.47589 * 184.79977 * 10 9 8 12 12 C 1.53000 * 109.47217 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.46690 * 179.97438 * 12 11 10 14 14 C 1.53009 * 109.46862 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46959 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00187 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99679 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00092 * 179.97438 * 17 15 14 19 19 Si 1.86805 * 120.00108 * 359.97438 * 17 15 14 20 20 H 1.48495 * 109.46969 * 90.00584 * 19 17 15 21 21 H 1.48501 * 109.47130 * 210.00245 * 19 17 15 22 22 H 1.48498 * 109.47138 * 330.00279 * 19 17 15 23 23 C 1.41285 * 109.42803 * 0.02562 * 8 6 5 24 24 O 1.21489 * 127.58837 * 180.02562 * 23 8 6 25 25 H 1.08998 * 109.47302 * 299.99538 * 1 2 3 26 26 H 1.09000 * 109.47242 * 60.00520 * 1 2 3 27 27 H 1.09002 * 109.46825 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46892 * 240.00148 * 2 1 3 29 29 H 1.09000 * 109.47242 * 119.99480 * 2 1 3 30 30 H 1.08998 * 109.46870 * 264.57513 * 7 6 5 31 31 H 1.09004 * 109.46778 * 24.57444 * 7 6 5 32 32 H 1.08997 * 109.46790 * 144.57253 * 7 6 5 33 33 H 1.08999 * 109.47155 * 304.79831 * 10 9 8 34 34 H 1.09001 * 109.47048 * 64.79766 * 10 9 8 35 35 H 1.08999 * 109.46753 * 300.00100 * 11 10 9 36 36 H 1.09001 * 109.47097 * 59.99820 * 11 10 9 37 37 H 1.08999 * 109.47307 * 299.99720 * 12 11 10 38 38 H 1.08996 * 109.47099 * 60.00348 * 12 11 10 39 39 H 1.08998 * 109.47484 * 299.99596 * 13 12 11 40 40 H 1.09001 * 109.47314 * 59.99968 * 13 12 11 41 41 H 1.08998 * 109.46741 * 300.00051 * 14 13 12 42 42 H 1.09001 * 109.47182 * 59.99888 * 14 13 12 43 43 H 0.96998 * 120.00430 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5814 2.0073 -0.8117 5 8 1.7720 2.0680 1.2619 6 6 2.9400 2.4226 1.8221 7 6 3.0521 3.1038 3.1617 8 6 3.9985 2.0978 1.0597 9 8 5.3014 2.3372 1.3788 10 6 6.0114 3.2640 0.5549 11 6 7.4778 3.3129 0.9888 12 6 8.2378 4.3057 0.1070 13 6 9.7040 4.3549 0.5413 14 6 10.4642 5.3474 -0.3409 15 6 11.9086 5.3954 0.0865 16 1 12.2501 4.7800 0.9057 17 6 12.7937 6.2257 -0.5676 18 7 14.0541 6.2681 -0.1943 19 14 12.2029 7.2906 -1.9841 20 1 11.7454 8.6025 -1.4598 21 1 13.3171 7.5021 -2.9427 22 1 11.0765 6.6139 -2.6758 23 6 3.5503 1.4695 -0.1237 24 8 4.2267 1.0439 -1.0388 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 3.1190 4.1820 3.0166 31 1 2.1723 2.8718 3.7620 32 1 3.9460 2.7500 3.6754 33 1 5.9509 2.9455 -0.4857 34 1 5.5688 4.2548 0.6579 35 1 7.5383 3.6314 2.0294 36 1 7.9204 2.3221 0.8858 37 1 8.1773 3.9876 -0.9338 38 1 7.7951 5.2964 0.2105 39 1 9.7642 4.6733 1.5820 40 1 10.1470 3.3643 0.4383 41 1 10.4040 5.0285 -1.3815 42 1 10.0214 6.3380 -0.2382 43 1 14.6769 6.8519 -0.6548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224377088.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:41 Heat of formation + Delta-G solvation = -117.762279 kcal Electronic energy + Delta-G solvation = -21511.867424 eV Core-core repulsion = 18136.800908 eV Total energy + Delta-G solvation = -3375.066516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.36731 -38.84167 -38.09217 -35.52081 -34.49293 -32.96508 -32.12306 -30.74147 -30.07293 -27.19312 -26.53834 -23.47894 -22.98597 -21.35611 -21.09076 -20.89384 -19.98888 -18.06134 -17.01605 -16.66709 -16.56392 -16.06713 -15.53911 -14.97697 -14.80802 -14.43257 -14.26257 -14.18251 -14.08684 -13.73358 -13.40454 -12.94946 -12.80740 -12.72316 -12.59786 -12.36718 -12.14823 -11.97824 -11.63180 -11.52277 -11.32700 -11.19989 -10.77739 -10.64355 -10.39140 -9.85783 -9.65375 -9.53395 -9.45040 -9.12107 -8.68569 -8.49593 -6.00078 -3.97516 0.40491 2.17097 2.42479 3.17739 3.33432 3.40639 3.45335 3.79128 3.98887 4.19657 4.32895 4.49121 4.66220 4.74226 4.86500 4.92772 4.99602 5.07316 5.09462 5.12134 5.20193 5.33987 5.40119 5.42106 5.46794 5.52506 5.65225 5.68023 5.71968 5.97534 6.19937 6.25039 6.29798 6.41808 6.68742 6.78004 6.87787 6.99132 7.37583 7.40176 7.50496 7.84978 8.59431 9.05486 9.62859 11.13535 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.034997 B = 0.002438 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.868484 B =11484.031846 C =11808.483504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.012 3.988 4 H 0.138 0.862 5 O -0.262 6.262 6 C 0.145 3.855 7 C -0.101 4.101 8 C -0.160 4.160 9 O -0.293 6.293 10 C 0.059 3.941 11 C -0.114 4.114 12 C -0.118 4.118 13 C -0.101 4.101 14 C -0.016 4.016 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 C 0.351 3.649 24 O -0.428 6.428 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.015 0.985 42 H 0.010 0.990 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.420 -9.533 4.077 33.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.045 4.045 4 H 0.155 0.845 5 O -0.172 6.172 6 C 0.094 3.906 7 C -0.157 4.157 8 C -0.207 4.207 9 O -0.209 6.209 10 C -0.016 4.016 11 C -0.152 4.152 12 C -0.155 4.155 13 C -0.139 4.139 14 C -0.053 4.053 15 C -0.557 4.557 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.190 1.190 23 C 0.231 3.769 24 O -0.306 6.306 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.033 0.967 42 H 0.028 0.972 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -31.042 -9.732 3.772 32.750 hybrid contribution -0.119 0.747 -1.071 1.311 sum -31.161 -8.985 2.701 32.543 Atomic orbital electron populations 1.21766 0.93845 1.02539 1.02635 1.21660 0.97721 0.91644 1.04477 1.23716 0.97207 0.97449 0.86095 0.84524 1.86732 1.26904 1.71030 1.32582 1.22599 0.84277 0.88151 0.95532 1.20765 1.05069 1.00742 0.89081 1.19574 0.87073 1.13666 1.00384 1.86185 1.17432 1.62624 1.54669 1.22983 0.93004 0.91003 0.94579 1.21575 0.91326 1.01314 1.00962 1.21617 0.97130 0.97902 0.98890 1.21440 0.91858 1.00519 1.00060 1.19595 0.96095 0.94233 0.95376 1.21191 0.91884 1.24623 1.18000 0.91067 1.25056 0.94791 0.96766 0.97093 1.69919 1.03278 1.39407 1.41862 0.86758 0.78577 0.81044 0.82789 1.20359 1.21439 1.19022 1.21881 0.90755 0.77437 0.86833 1.90673 1.63992 1.39678 1.36218 0.91803 0.92226 0.91808 0.89000 0.90384 0.88385 0.89564 0.87894 0.92613 0.93128 0.91103 0.91045 0.92308 0.92378 0.92750 0.92706 0.96711 0.97172 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.85 37.16 0.37 -0.35 16 2 C -0.12 -0.75 5.70 -26.73 -0.15 -0.91 16 3 C 0.01 0.10 3.68 -27.46 -0.10 0.00 16 4 H 0.14 0.82 8.14 -51.93 -0.42 0.40 16 5 O -0.26 -2.08 10.56 -14.75 -0.16 -2.24 16 6 C 0.14 1.25 7.13 -35.65 -0.25 1.00 16 7 C -0.10 -0.57 10.21 36.01 0.37 -0.20 16 8 C -0.16 -1.87 6.15 -39.77 -0.24 -2.11 16 9 O -0.29 -3.99 10.02 -20.62 -0.21 -4.20 16 10 C 0.06 0.79 6.03 37.16 0.22 1.02 16 11 C -0.11 -1.64 5.58 -26.73 -0.15 -1.79 16 12 C -0.12 -1.93 5.21 -26.73 -0.14 -2.07 16 13 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 14 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 15 C -0.52 -15.26 9.66 -34.44 -0.33 -15.60 16 16 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -28.56 13.96 55.43 0.77 -27.79 16 19 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 23 C 0.35 4.15 6.97 -32.73 -0.23 3.92 16 24 O -0.43 -6.48 17.66 5.33 0.09 -6.39 16 25 H 0.06 0.31 8.02 -51.93 -0.42 -0.10 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.61 8.11 -51.93 -0.42 0.19 16 33 H 0.06 0.81 7.66 -51.93 -0.40 0.41 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 42 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 43 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 360.10 15.07 5.43 5.43 Total: -1.00 -34.12 360.10 -7.24 -41.35 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -7.51 Total: -5.82 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -0.99 Total: -17.97 kcal Atomic # 7 Polarization: -28.56 SS G_CDS: 0.77 Total: -27.79 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.27 Total: -12.82 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.12 -7.24 -41.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224377088.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.410 kcal (2) G-P(sol) polarization free energy of solvation -34.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds