Wall clock time and date at job start Tue Mar 31 2020 05:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45199 * 109.46991 * 2 1 4 4 C 1.34230 * 116.99649 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00279 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99950 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.47623 * 179.97438 * 6 4 3 8 8 H 1.08993 * 109.46984 * 54.99142 * 7 6 4 9 9 C 1.50696 * 109.47562 * 174.99855 * 7 6 4 10 10 H 1.08007 * 119.99662 * 239.99765 * 9 7 6 11 11 C 1.37878 * 120.00248 * 59.99549 * 9 7 6 12 12 N 1.31511 * 119.99624 * 0.02562 * 11 9 7 13 13 Si 1.86796 * 120.00287 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.46947 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47100 * 120.00051 * 13 11 9 16 16 H 1.48496 * 109.47559 * 240.00508 * 13 11 9 17 17 O 1.42902 * 109.46922 * 294.99734 * 7 6 4 18 18 C 1.42898 * 114.00186 * 149.99499 * 17 7 6 19 19 C 1.50703 * 109.47171 * 180.02562 * 18 17 7 20 20 C 1.29445 * 117.96275 * 359.73476 * 19 18 17 21 21 C 1.50058 * 124.07832 * 180.23685 * 20 19 18 22 22 C 1.53026 * 110.20198 * 343.32259 * 21 20 19 23 23 C 1.53396 * 108.43744 * 49.24214 * 22 21 20 24 24 C 1.50065 * 117.96069 * 180.02562 * 19 18 17 25 25 H 1.09004 * 109.47492 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47477 * 300.00391 * 1 2 3 27 27 H 1.09003 * 109.47336 * 60.00486 * 1 2 3 28 28 H 1.09002 * 109.47477 * 239.99609 * 2 1 3 29 29 H 1.09005 * 109.46826 * 120.00079 * 2 1 3 30 30 H 1.09000 * 109.47811 * 59.99183 * 6 4 3 31 31 H 1.09006 * 109.47085 * 299.99805 * 6 4 3 32 32 H 0.97004 * 120.00010 * 179.97438 * 12 11 9 33 33 H 1.09002 * 109.47259 * 300.00293 * 18 17 7 34 34 H 1.09001 * 109.47074 * 60.00315 * 18 17 7 35 35 H 1.07998 * 117.95995 * 0.47340 * 20 19 18 36 36 H 1.09000 * 109.48918 * 223.00289 * 21 20 19 37 37 H 1.08999 * 109.17680 * 103.44682 * 21 20 19 38 38 H 1.09005 * 109.64288 * 289.56390 * 22 21 20 39 39 H 1.08997 * 109.81856 * 169.03328 * 22 21 20 40 40 H 1.09000 * 109.63670 * 172.88091 * 23 22 21 41 41 H 1.08999 * 109.63849 * 52.25336 * 23 22 21 42 42 H 1.09003 * 109.35738 * 283.04986 * 24 19 18 43 43 H 1.08993 * 109.36300 * 42.77764 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9373 0.0000 7 6 5.4486 2.8573 -0.0001 8 1 5.7805 2.2499 -0.8421 9 6 6.0243 4.2445 -0.1234 10 1 6.6591 4.4932 -0.9611 11 6 5.7407 5.1962 0.8330 12 7 4.9681 4.8932 1.8532 13 14 6.4549 6.9155 0.6806 14 1 7.2854 6.9994 -0.5477 15 1 5.3505 7.9049 0.5993 16 1 7.2963 7.2092 1.8684 17 8 5.8946 2.2633 1.2207 18 6 7.1177 1.5344 1.0996 19 6 7.4912 0.9539 2.4393 20 6 6.7066 1.1873 3.4420 21 6 6.9483 0.6821 4.8342 22 6 7.9771 -0.4505 4.8141 23 6 9.1870 0.0075 3.9898 24 6 8.7531 0.1467 2.5292 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.5852 3.4691 0.8904 31 1 3.5844 3.4700 -0.8896 32 1 4.7689 5.5626 2.5264 33 1 6.9902 0.7280 0.3774 34 1 7.9078 2.2043 0.7605 35 1 5.8210 1.7794 3.2648 36 1 6.0129 0.3131 5.2546 37 1 7.3222 1.4989 5.4516 38 1 7.5372 -1.3371 4.3574 39 1 8.2930 -0.6809 5.8316 40 1 9.9838 -0.7322 4.0666 41 1 9.5395 0.9701 4.3603 42 1 8.5793 -0.8436 2.1083 43 1 9.5419 0.6453 1.9659 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225002701.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:27 Heat of formation + Delta-G solvation = -141.026995 kcal Electronic energy + Delta-G solvation = -23099.892869 eV Core-core repulsion = 19723.817519 eV Total energy + Delta-G solvation = -3376.075350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.166 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.64372 -38.26627 -36.59722 -35.55903 -33.06106 -31.51765 -31.14619 -30.31211 -29.57792 -26.05236 -24.83528 -23.10830 -22.76079 -21.53003 -20.95107 -19.71037 -17.11561 -16.95577 -16.31253 -16.07505 -15.64137 -15.14800 -14.90510 -14.38337 -14.27813 -13.70710 -13.62384 -13.32886 -13.09948 -12.65965 -12.60585 -12.38081 -12.17994 -11.83711 -11.69090 -11.64084 -11.32032 -11.08222 -10.96196 -10.90902 -10.70464 -10.56897 -10.49669 -10.05144 -10.01870 -9.86457 -9.61480 -9.46346 -9.06833 -8.59186 -8.15271 -7.68962 -6.04965 -4.22638 3.04832 3.15551 3.25153 3.34872 3.37953 3.44391 4.37497 4.92252 5.13554 5.14900 5.17100 5.17767 5.21184 5.38716 5.45834 5.56250 5.78994 5.83259 5.91447 5.93678 5.94964 5.97570 6.01522 6.14287 6.21658 6.22399 6.27884 6.34076 6.50024 6.53742 6.58073 6.69243 6.71416 6.87578 7.07963 7.13603 7.50822 7.57932 7.82117 7.88618 8.17003 8.62707 8.70773 9.08062 9.53662 10.96905 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.009169 B = 0.007342 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3053.136253 B = 3812.536994 C = 6125.379688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.369 6.369 4 C 0.458 3.542 5 O -0.515 6.515 6 C -0.102 4.102 7 C 0.232 3.768 8 H 0.013 0.987 9 C -0.558 4.558 10 H 0.060 0.940 11 C 0.087 3.913 12 N -0.857 5.857 13 Si 0.888 3.112 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.283 1.283 17 O -0.359 6.359 18 C 0.110 3.890 19 C -0.134 4.134 20 C -0.143 4.143 21 C -0.087 4.087 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.077 4.077 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.262 0.738 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.129 0.871 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.291 -8.652 1.779 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.287 6.287 4 C 0.302 3.698 5 O -0.402 6.402 6 C -0.139 4.139 7 C 0.176 3.824 8 H 0.031 0.969 9 C -0.595 4.595 10 H 0.078 0.922 11 C -0.119 4.119 12 N -0.493 5.493 13 Si 0.716 3.284 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.209 1.209 17 O -0.278 6.278 18 C 0.032 3.968 19 C -0.134 4.134 20 C -0.160 4.160 21 C -0.124 4.124 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.114 4.114 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.147 0.853 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.286 -8.879 2.110 9.216 hybrid contribution 0.485 0.820 -0.276 0.992 sum -0.801 -8.058 1.834 8.303 Atomic orbital electron populations 1.21775 0.93441 1.02215 1.03276 1.22816 0.94743 0.82064 1.01884 1.86592 1.26513 1.30731 1.84878 1.25007 0.79226 0.94487 0.71037 1.90563 1.60160 1.43659 1.45833 1.21902 0.97919 0.87617 1.06485 1.19293 0.87829 0.91867 0.83424 0.96943 1.21511 1.32412 0.95894 1.09711 0.92219 1.24974 0.94014 0.98385 0.94574 1.69887 1.34897 1.33735 1.10812 0.86617 0.79151 0.84471 0.78184 1.19750 1.20835 1.20876 1.87912 1.37043 1.68612 1.34281 1.20846 0.89385 0.93420 0.93114 1.20749 0.96326 1.00307 0.95999 1.21989 1.01100 1.00185 0.92759 1.20428 0.98484 0.97394 0.96105 1.21598 0.96296 0.98513 0.99240 1.21559 0.97233 1.01063 0.95521 1.20250 0.95566 0.99149 0.96446 0.90949 0.91630 0.91774 0.92051 0.91846 0.84536 0.88946 0.92814 0.94856 0.93946 0.85325 0.91784 0.91562 0.92121 0.92481 0.92318 0.91892 0.91649 0.91561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.29 37.16 0.38 -1.32 16 2 C 0.06 0.91 6.19 37.16 0.23 1.14 16 3 O -0.37 -7.08 10.22 -39.26 -0.40 -7.49 16 4 C 0.46 10.07 7.84 36.00 0.28 10.35 16 5 O -0.51 -12.23 15.17 -24.06 -0.36 -12.60 16 6 C -0.10 -2.37 5.22 -27.89 -0.15 -2.51 16 7 C 0.23 5.88 1.82 -27.88 -0.05 5.83 16 8 H 0.01 0.32 7.60 -51.93 -0.39 -0.08 16 9 C -0.56 -14.88 8.90 -34.44 -0.31 -15.19 16 10 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 11 C 0.09 2.30 5.24 -17.82 -0.09 2.20 16 12 N -0.86 -23.24 10.93 55.43 0.61 -22.63 16 13 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 O -0.36 -9.17 6.71 -49.68 -0.33 -9.50 16 18 C 0.11 2.48 6.05 36.01 0.22 2.69 16 19 C -0.13 -2.65 5.84 -100.94 -0.59 -3.24 16 20 C -0.14 -2.87 9.22 -35.90 -0.33 -3.20 16 21 C -0.09 -1.39 6.11 -28.18 -0.17 -1.56 16 22 C -0.12 -1.62 6.01 -26.51 -0.16 -1.78 16 23 C -0.12 -1.58 6.01 -26.52 -0.16 -1.74 16 24 C -0.08 -1.21 5.81 -28.19 -0.16 -1.38 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.91 8.13 -51.93 -0.42 0.48 16 29 H 0.06 0.99 8.13 -51.93 -0.42 0.56 16 30 H 0.14 3.45 6.22 -51.93 -0.32 3.13 16 31 H 0.09 1.99 8.14 -51.93 -0.42 1.57 16 32 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.03 0.75 8.09 -51.93 -0.42 0.33 16 34 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.13 3.07 6.43 -52.49 -0.34 2.73 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 0.83 8.13 -51.93 -0.42 0.41 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 350.98 15.07 5.29 5.29 Total: -1.00 -29.27 350.98 -8.64 -37.91 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.36 Total: 3.21 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -1.06 Total: -9.70 kcal Atomic # 7 Polarization: -23.24 SS G_CDS: 0.61 Total: -22.63 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.10 Total: -29.59 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.27 -8.64 -37.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225002701.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.116 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds