Wall clock time and date at job start Tue Mar 31 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35838 * 117.00238 * 2 1 4 4 C 1.39185 * 121.09457 * 359.97438 * 3 2 1 5 5 C 1.38568 * 117.95270 * 180.02562 * 4 3 2 6 6 N 1.31884 * 120.02352 * 359.97438 * 5 4 3 7 7 N 1.28325 * 122.40569 * 0.02562 * 6 5 4 8 8 C 1.32166 * 122.16208 * 359.97438 * 7 6 5 9 9 O 1.35783 * 120.17100 * 180.27385 * 8 7 6 10 10 C 1.42899 * 117.00392 * 359.73050 * 9 8 7 11 11 H 1.08998 * 109.46763 * 30.00083 * 10 9 8 12 12 C 1.50694 * 109.46981 * 269.99631 * 10 9 8 13 13 H 1.08007 * 119.99625 * 120.00408 * 12 10 9 14 14 C 1.37874 * 120.00145 * 299.99331 * 12 10 9 15 15 N 1.31515 * 120.00005 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00030 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47050 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47038 * 120.00496 * 16 14 12 19 19 H 1.48502 * 109.47254 * 240.00640 * 16 14 12 20 20 C 1.53002 * 109.47111 * 149.99184 * 10 9 8 21 21 N 1.46900 * 109.47605 * 293.25069 * 20 10 9 22 22 C 1.46897 * 109.47257 * 64.68026 * 21 20 10 23 23 C 1.46896 * 109.47033 * 184.68164 * 21 20 10 24 24 C 1.46905 * 109.46692 * 304.68061 * 21 20 10 25 25 H 1.08999 * 109.46890 * 60.00148 * 1 2 3 26 26 H 1.09002 * 109.46928 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47168 * 300.00156 * 1 2 3 28 28 H 1.07998 * 121.02911 * 0.02562 * 4 3 2 29 29 H 1.08001 * 119.99061 * 180.02562 * 5 4 3 30 30 H 0.96999 * 119.99756 * 179.97438 * 15 14 12 31 31 H 1.08999 * 109.46817 * 53.25269 * 20 10 9 32 32 H 1.08996 * 109.47037 * 173.24227 * 20 10 9 33 33 H 1.09002 * 109.46942 * 51.07885 * 22 21 20 34 34 H 1.08997 * 109.47011 * 171.08192 * 22 21 20 35 35 H 1.09005 * 109.47291 * 291.08483 * 22 21 20 36 36 H 1.09000 * 109.47350 * 60.00069 * 23 21 20 37 37 H 1.08996 * 109.46833 * 179.97438 * 23 21 20 38 38 H 1.09001 * 109.47284 * 299.99819 * 23 21 20 39 39 H 1.08997 * 109.47015 * 59.99954 * 24 21 20 40 40 H 1.08997 * 109.46658 * 179.97438 * 24 21 20 41 41 H 1.09001 * 109.47243 * 300.00271 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 1.3102 2.3919 -0.0005 5 6 2.0061 3.5902 -0.0010 6 7 3.3249 3.5874 -0.0005 7 7 4.0103 2.5025 0.0000 8 6 3.4402 1.3102 0.0005 9 8 4.2049 0.1882 0.0067 10 6 5.6224 0.3690 0.0064 11 1 5.8699 1.3005 0.5155 12 6 6.1213 0.4252 -1.4145 13 1 6.6349 1.3054 -1.7720 14 6 5.9223 -0.6472 -2.2579 15 7 5.2966 -1.7189 -1.8225 16 14 6.5401 -0.5773 -4.0194 17 1 7.2050 0.7286 -4.2593 18 1 7.5123 -1.6765 -4.2470 19 1 5.3945 -0.7286 -4.9522 20 6 6.2861 -0.8018 0.7342 21 7 5.9261 -0.7609 2.1578 22 6 4.4800 -0.9737 2.3036 23 6 6.6514 -1.8169 2.8767 24 6 6.2872 0.5488 2.7167 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.2303 2.3754 -0.0005 29 1 1.4682 4.5268 -0.0010 30 1 5.1563 -2.4732 -2.4161 31 1 5.9435 -1.7409 0.2996 32 1 7.3686 -0.7272 0.6308 33 1 4.1868 -1.8670 1.7519 34 1 4.2360 -1.1015 3.3582 35 1 3.9441 -0.1106 1.9086 36 1 7.7244 -1.6590 2.7686 37 1 6.3846 -1.7863 3.9331 38 1 6.3835 -2.7887 2.4620 39 1 5.7491 1.3323 2.1832 40 1 6.0197 0.5793 3.7729 41 1 7.3602 0.7067 2.6085 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234417244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:43 Heat of formation + Delta-G solvation = 100.745849 kcal Electronic energy + Delta-G solvation = -24243.999257 eV Core-core repulsion = 20858.930543 eV Total energy + Delta-G solvation = -3385.068714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 282.160 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.35012 -42.01177 -39.55570 -38.86893 -34.79332 -33.16791 -32.30558 -31.16382 -30.33775 -30.21720 -28.78578 -27.75935 -25.32747 -24.70475 -24.58812 -22.54617 -19.69890 -19.33748 -18.93034 -18.73551 -18.45527 -18.02315 -17.34731 -17.06964 -16.15052 -15.93075 -15.76821 -15.53338 -15.04680 -14.90612 -14.75173 -14.66580 -14.42778 -14.12533 -13.98693 -13.92018 -13.74919 -13.45874 -12.94501 -12.75955 -12.64370 -12.56378 -12.16381 -11.90889 -11.77550 -11.27609 -10.98032 -10.48780 -10.41660 -10.13781 -9.19029 -7.74442 -5.92735 -0.01677 0.30690 0.33190 1.96964 2.10678 2.20410 2.29561 2.30658 2.35028 2.39290 2.48155 2.82558 3.05219 3.17188 3.22506 3.38374 3.45491 3.52982 3.59741 3.64504 3.67887 3.72116 3.76780 3.85434 3.86160 3.92308 4.06494 4.12595 4.16465 4.21435 4.45523 4.48639 4.64928 4.72183 4.77450 5.17257 5.30679 5.97387 6.22095 6.29815 6.65292 7.27898 7.90148 8.01944 9.28569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.289 6.289 3 C 0.104 3.896 4 C -0.196 4.196 5 C 0.036 3.964 6 N -0.236 5.236 7 N -0.269 5.269 8 C 0.268 3.732 9 O -0.281 6.281 10 C 0.191 3.809 11 H 0.068 0.932 12 C -0.549 4.549 13 H 0.082 0.918 14 C 0.087 3.913 15 N -0.863 5.863 16 Si 0.903 3.097 17 H -0.265 1.265 18 H -0.274 1.274 19 H -0.276 1.276 20 C -0.003 4.003 21 N -0.273 5.273 22 C -0.038 4.038 23 C -0.040 4.040 24 C -0.049 4.049 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.058 0.942 28 H 0.154 0.846 29 H 0.172 0.828 30 H 0.277 0.723 31 H 0.159 0.841 32 H 0.126 0.874 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.109 0.891 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -2.142 16.286 16.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.198 6.198 3 C 0.046 3.954 4 C -0.225 4.225 5 C -0.131 4.131 6 N -0.080 5.080 7 N -0.127 5.127 8 C 0.080 3.920 9 O -0.185 6.185 10 C 0.136 3.864 11 H 0.085 0.915 12 C -0.586 4.586 13 H 0.100 0.900 14 C -0.123 4.123 15 N -0.498 5.498 16 Si 0.729 3.271 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.201 1.201 20 C -0.121 4.121 21 N 0.068 4.932 22 C -0.180 4.180 23 C -0.182 4.182 24 C -0.191 4.191 25 H 0.078 0.922 26 H 0.125 0.875 27 H 0.076 0.924 28 H 0.171 0.829 29 H 0.189 0.811 30 H 0.088 0.912 31 H 0.176 0.824 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.127 0.873 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.492 -2.081 16.239 16.379 hybrid contribution -1.431 -0.674 -1.237 2.008 sum -1.923 -2.754 15.001 15.373 Atomic orbital electron populations 1.23219 0.77800 1.04821 1.01586 1.86252 1.21567 1.24547 1.87458 1.19493 0.90712 0.86412 0.98799 1.22326 1.02203 0.91820 1.06129 1.23934 0.92207 0.98660 0.98288 1.72657 1.06585 1.18654 1.10126 1.73104 1.30250 0.93590 1.15759 1.21095 0.86922 0.89332 0.94691 1.86625 1.21862 1.25155 1.84823 1.20405 0.76179 0.91599 0.98167 0.91472 1.21272 1.40005 1.03328 0.93947 0.89999 1.25104 0.92372 0.94584 1.00199 1.69633 1.37134 1.05427 1.37559 0.86287 0.79303 0.79266 0.82262 1.18866 1.19976 1.20093 1.24938 1.04380 1.10047 0.72779 1.46418 1.15157 1.13913 1.17721 1.24234 0.77905 1.10018 1.05794 1.23998 1.00955 0.93091 1.00130 1.24106 1.07023 0.85035 1.02905 0.92183 0.87486 0.92370 0.82885 0.81075 0.91240 0.82390 0.85626 0.85914 0.88185 0.86005 0.86723 0.87254 0.86494 0.86113 0.87251 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 9.85 101.05 1.00 0.95 16 2 O -0.29 -0.63 10.35 -32.06 -0.33 -0.96 16 3 C 0.10 0.29 6.76 -38.64 -0.26 0.03 16 4 C -0.20 -0.13 9.18 -39.11 -0.36 -0.49 16 5 C 0.04 0.06 11.30 -17.41 -0.20 -0.14 16 6 N -0.24 -1.13 11.49 30.53 0.35 -0.78 16 7 N -0.27 -1.43 9.83 30.60 0.30 -1.13 16 8 C 0.27 1.16 6.74 -16.82 -0.11 1.05 16 9 O -0.28 -1.06 6.19 -31.89 -0.20 -1.26 16 10 C 0.19 0.50 1.63 -27.88 -0.05 0.46 16 11 H 0.07 0.10 4.70 -51.93 -0.24 -0.14 16 12 C -0.55 -4.61 8.90 -34.44 -0.31 -4.91 16 13 H 0.08 0.84 7.81 -52.48 -0.41 0.43 16 14 C 0.09 0.85 5.24 -17.82 -0.09 0.75 16 15 N -0.86 -8.07 10.95 55.43 0.61 -7.46 16 16 Si 0.90 8.89 29.54 -169.99 -5.02 3.87 16 17 H -0.26 -2.80 7.11 56.52 0.40 -2.40 16 18 H -0.27 -2.73 7.11 56.52 0.40 -2.33 16 19 H -0.28 -3.12 7.11 56.52 0.40 -2.71 16 20 C 0.00 0.01 3.53 -3.82 -0.01 0.00 16 21 N -0.27 2.36 0.05 -395.63 -0.02 2.34 16 22 C -0.04 0.29 7.18 60.06 0.43 0.72 16 23 C -0.04 0.47 8.00 60.06 0.48 0.95 16 24 C -0.05 0.47 7.53 60.07 0.45 0.92 16 25 H 0.06 -0.13 7.73 -51.93 -0.40 -0.53 16 26 H 0.11 -0.35 8.14 -51.93 -0.42 -0.77 16 27 H 0.06 -0.22 7.73 -51.93 -0.40 -0.63 16 28 H 0.15 -0.39 6.56 -52.49 -0.34 -0.73 16 29 H 0.17 -0.29 8.06 -52.49 -0.42 -0.71 16 30 H 0.28 2.73 8.31 -40.82 -0.34 2.39 16 31 H 0.16 -0.02 6.12 -51.93 -0.32 -0.33 16 32 H 0.13 -0.49 8.09 -51.93 -0.42 -0.91 16 33 H 0.12 -0.75 7.95 -51.93 -0.41 -1.16 16 34 H 0.10 -1.08 8.01 -51.93 -0.42 -1.49 16 35 H 0.12 -0.55 4.94 -51.93 -0.26 -0.80 16 36 H 0.11 -1.43 8.12 -51.93 -0.42 -1.85 16 37 H 0.11 -1.50 8.08 -51.93 -0.42 -1.92 16 38 H 0.12 -1.32 8.14 -51.93 -0.42 -1.75 16 39 H 0.12 -0.80 5.86 -51.93 -0.30 -1.10 16 40 H 0.11 -1.32 8.14 -51.93 -0.42 -1.75 16 41 H 0.12 -1.27 8.14 -51.93 -0.42 -1.69 16 LS Contribution 326.19 15.07 4.92 4.92 Total: 0.00 -18.64 326.19 -4.44 -23.08 By element: Atomic # 1 Polarization: -16.89 SS G_CDS: -6.02 Total: -22.90 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 0.97 Total: 0.29 kcal Atomic # 7 Polarization: -8.27 SS G_CDS: 1.24 Total: -7.03 kcal Atomic # 8 Polarization: -1.69 SS G_CDS: -0.53 Total: -2.22 kcal Atomic # 14 Polarization: 8.89 SS G_CDS: -5.02 Total: 3.87 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -18.64 -4.44 -23.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234417244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.825 kcal (2) G-P(sol) polarization free energy of solvation -18.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds